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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Raman, R."

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Search Summary

This query matches 13 Structures.

Refinements

Structure Determination Methodology

experimental (13)

Scientific Name of Source Organism

	Influenza A virus (A/chicken/Vietnam/NCVD-093/2008(H5N1)) (3)
	Influenza A virus (A/duck/Egypt/10185SS/2010(H5N1)) (3)
	Neurospora crassa OR74A (2)
	Pedobacter heparinus (2)
	Clostridium beijerinckii NCIMB 8052 (1)
	Leptospira interrogans (1)
	Methanothrix thermoacetophila PT (1)

Taxonomy

	Riboviria (6)
	Bacteria (4)
	Eukaryota (2)
	Archaea (1)

Experimental Method

	X-RAY DIFFRACTION (12)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (13)

Refinement Resolution (Å)

	1.5 - 2.0 (5)
	2.0 - 2.5 (1)
	2.5 - 3.0 (6)

Release Date

	2000 - 2004 (2)
	2010 - 2014 (1)
	2015 - 2019 (10)

Enzyme Classification Name

Lyases (2)

Symmetry Type

	Asymmetric (6)
	Cyclic (7)

SCOP Classification

	Artifacts (6)
	All beta proteins (9)
	Coiled coil proteins (6)

AllSelected

1 to 13 of 13 Structures

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1OFL \| pdb_00001ofl	Download File View File

CRYSTAL STRUCTURE OF CHONDROITINASE B COMPLEXED TO DERMATAN SULFATE HEXASACCHARIDE

Michel, G., Cygler, M.

(2004) J Biological Chem 279: 32882

Released	2004-06-10
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Pedobacter heparinus
Macromolecule	CHONDROITINASE B (protein)
Unique Ligands	CA
Unique branched monosaccharides	ASG, BGC, GCD, GCU, GLA, MAN, MXZ, NGK, RAM, XYP

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1OFM \| pdb_00001ofm	Download File View File

CRYSTAL STRUCTURE OF CHONDROITINASE B COMPLEXED TO CHONDROITIN 4-SULFATE TETRASACCHARIDE

Michel, G., Cygler, M.

(2004) J Biological Chem 279: 32882

Released	2004-04-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Pedobacter heparinus
Macromolecule	CHONDROITINASE B (protein)
Unique branched monosaccharides	ASG, BDP, BGC, GCD, GCU, GLA, MAN, MXZ, RAM, XYP

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2MOG \| pdb_00002mog	Download File View File

Solution structure of the terminal Ig-like domain from Leptospira interrogans LigB

Ptak, C.P., Hsieh, C., Lin, Y., Maltsev, A.S., Raman, R., Sharma, Y., Oswald, R.E., Chang, Y.

(2014) Biochemistry 53: 5249-5260

Released	2014-08-13
Method	SOLUTION NMR
Organisms	Leptospira interrogans
Macromolecule	Bacterial Ig-like domain, group 2 (protein)

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5E2Y \| pdb_00005e2y	Download File View File

Crystal structure of H5 hemagglutinin Q226L mutant from the influenza virus A/duck/Egypt/10185SS/2010 (H5N1)

Zhu, X., Wilson, I.A.

(2015) Cell Rep 13: 1683-1691

Released	2015-12-02
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Influenza A virus (A/duck/Egypt/10185SS/2010(H5N1))
Macromolecule	Hemagglutinin (protein)
Unique Ligands	NAG
Unique branched monosaccharides	FUC, FUL, NAG

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5E2Z \| pdb_00005e2z	Download File View File

Crystal structure of H5 hemagglutinin Q226L mutant from the influenza virus A/duck/Egypt/10185SS/2010 (H5N1) with LSTa

Zhu, X., Wilson, I.A.

(2015) Cell Rep 13: 1683-1691

Released	2015-12-02
Method	X-RAY DIFFRACTION 2.624 Å
Organisms	Influenza A virus (A/duck/Egypt/10185SS/2010(H5N1))
Macromolecule	Hemagglutinin (protein)
Unique Ligands	NAG
Unique branched monosaccharides	FUC, FUL, GAL, NAG, SIA

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5E30 \| pdb_00005e30	Download File View File

Crystal structure of H5 hemagglutinin Q226L mutant from the influenza virus A/duck/Egypt/10185SS/2010 (H5N1) with LSTc

Zhu, X., Wilson, I.A.

(2015) Cell Rep 13: 1683-1691

Released	2015-12-02
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Influenza A virus (A/duck/Egypt/10185SS/2010(H5N1))
Macromolecule	Hemagglutinin (protein)
Unique Ligands	NAG
Unique branched monosaccharides	FUC, FUL, GAL, NAG, SIA

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5E32 \| pdb_00005e32	Download File View File

Crystal structure of H5 hemagglutinin mutant (N224K, Q226L, N158D and L133a deletion) from the influenza virus A/chicken/Vietnam/NCVD-093/2008 (H5N1)

Zhu, X., Wilson, I.A.

(2015) Cell Rep 13: 1683-1691

Released	2015-12-02
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Influenza A virus (A/chicken/Vietnam/NCVD-093/2008(H5N1))
Macromolecule	Hemagglutinin (protein)
Unique Ligands	NAG

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5E34 \| pdb_00005e34	Download File View File

Crystal structure of H5 hemagglutinin mutant (N224K, Q226L, N158D and L133a deletion) from the influenza virus A/chicken/Vietnam/NCVD-093/2008 (H5N1) with LSTa

Zhu, X., Wilson, I.A.

(2015) Cell Rep 13: 1683-1691

Released	2015-12-02
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Influenza A virus (A/chicken/Vietnam/NCVD-093/2008(H5N1))
Macromolecule	Hemagglutinin (protein)
Unique Ligands	NAG
Unique branched monosaccharides	GAL, NAG, SIA

Explore in 3D

5E35 \| pdb_00005e35	Download File View File

Crystal structure of H5 hemagglutinin mutant (N224K, Q226L, N158D and L133a deletion) from the influenza virus A/chicken/Vietnam/NCVD-093/2008 (H5N1) with LSTc

Zhu, X., Wilson, I.A.

(2015) Cell Rep 13: 1683-1691

Released	2015-12-02
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Influenza A virus (A/chicken/Vietnam/NCVD-093/2008(H5N1))
Macromolecule	Hemagglutinin (protein)
Unique Ligands	NAG
Unique branched monosaccharides	GAL, NAG, SIA

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5HT7 \| pdb_00005ht7	Download File View File

Crystal structure of a transition-metal-ion-binding betagamma-crystallin from Methanosaeta thermophila

Srivastava, S.S., Sankaranarayanan, R.

(2017) Biochemistry 56: 1299-1310

Released	2017-02-01
Method	X-RAY DIFFRACTION 1.862 Å
Organisms	Methanothrix thermoacetophila PT
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	FE2

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5HT8 \| pdb_00005ht8	Download File View File

Crystal structure of clostrillin double mutant (S17H,S19H) in complex with nickel

Jamkhindikar, A., Srivastava, S.S., Sankaranarayanan, R.

(2017) Biochemistry 56: 1299-1310

Released	2017-02-01
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Clostridium beijerinckii NCIMB 8052
Macromolecule	Beta and gamma crystallin (protein)
Unique Ligands	NI

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5Z6D \| pdb_00005z6d	Download File View File

Crystal structure of Abundant Perithecial Protein (APP) from Neurospora crassa

Srivastava, S.S., Sankaranarayanan, R.

(2018) Mol Microbiol 110: 955-972

Released	2019-01-23
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Neurospora crassa OR74A
Macromolecule	DUF1881 domain-containing protein (protein)

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5Z6E \| pdb_00005z6e	Download File View File

Crystal structure of a beta gamma-crystallin domain of Abundant Perithecial Protein (APP) from Neurospora crassa in the Ca2+-bound form

Srivastava, S.S., Sankaranarayanan, R.

(2018) Mol Microbiol 110: 955-972

Released	2019-01-23
Method	X-RAY DIFFRACTION 1.864 Å
Organisms	Neurospora crassa OR74A
Macromolecule	DUF1881 domain-containing protein (protein)
Unique Ligands	CA, K

1 to 13 of 13 Structures

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1OFL | pdb_00001ofl

CRYSTAL STRUCTURE OF CHONDROITINASE B COMPLEXED TO DERMATAN SULFATE HEXASACCHARIDE

1OFM | pdb_00001ofm

CRYSTAL STRUCTURE OF CHONDROITINASE B COMPLEXED TO CHONDROITIN 4-SULFATE TETRASACCHARIDE

2MOG | pdb_00002mog

Solution structure of the terminal Ig-like domain from Leptospira interrogans LigB

5E2Y | pdb_00005e2y

Crystal structure of H5 hemagglutinin Q226L mutant from the influenza virus A/duck/Egypt/10185SS/2010 (H5N1)

5E2Z | pdb_00005e2z

Crystal structure of H5 hemagglutinin Q226L mutant from the influenza virus A/duck/Egypt/10185SS/2010 (H5N1) with LSTa

5E30 | pdb_00005e30

Crystal structure of H5 hemagglutinin Q226L mutant from the influenza virus A/duck/Egypt/10185SS/2010 (H5N1) with LSTc

5E32 | pdb_00005e32

Crystal structure of H5 hemagglutinin mutant (N224K, Q226L, N158D and L133a deletion) from the influenza virus A/chicken/Vietnam/NCVD-093/2008 (H5N1)

5E34 | pdb_00005e34

Crystal structure of H5 hemagglutinin mutant (N224K, Q226L, N158D and L133a deletion) from the influenza virus A/chicken/Vietnam/NCVD-093/2008 (H5N1) with LSTa

5E35 | pdb_00005e35

Crystal structure of H5 hemagglutinin mutant (N224K, Q226L, N158D and L133a deletion) from the influenza virus A/chicken/Vietnam/NCVD-093/2008 (H5N1) with LSTc

5HT7 | pdb_00005ht7

Crystal structure of a transition-metal-ion-binding betagamma-crystallin from Methanosaeta thermophila

5HT8 | pdb_00005ht8

Crystal structure of clostrillin double mutant (S17H,S19H) in complex with nickel

5Z6D | pdb_00005z6d

Crystal structure of Abundant Perithecial Protein (APP) from Neurospora crassa

5Z6E | pdb_00005z6e

Crystal structure of a beta gamma-crystallin domain of Abundant Perithecial Protein (APP) from Neurospora crassa in the Ca2+-bound form

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1OFL | pdb_00001ofl

1OFM | pdb_00001ofm

2MOG | pdb_00002mog

5E2Y | pdb_00005e2y

5E2Z | pdb_00005e2z

5E30 | pdb_00005e30

5E32 | pdb_00005e32

5E34 | pdb_00005e34

5E35 | pdb_00005e35

5HT7 | pdb_00005ht7

5HT8 | pdb_00005ht8

5Z6D | pdb_00005z6d

5Z6E | pdb_00005z6e