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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Rappsilber, J."

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Search Summary

This query matches 120 Structures.

Refinements

Structure Determination Methodology

experimental (120)

Scientific Name of Source Organism

	Mycoplasmoides pneumoniae M129 (31)
	Homo sapiens (28)
	synthetic construct (14)
	Saccharomyces cerevisiae (11)
	Escherichia coli K-12 (10)
	Saccharomyces cerevisiae S288C (8)
	Gallus gallus (7)
	Sus scrofa (5)
	Drosophila melanogaster (4)
	Mus musculus (4)

More...

Taxonomy

	Eukaryota (72)
	Bacteria (48)
	other sequences (14)
	Duplodnaviria (3)
	Riboviria (1)

Experimental Method

	ELECTRON MICROSCOPY (91)
	X-RAY DIFFRACTION (29)

Polymer Entity Type

	Protein (120)
	RNA (49)
	DNA (7)

Refinement Resolution (Å)

	1.5 - 2.0 (9)
	2.0 - 2.5 (8)
	2.5 - 3.0 (13)
	3.0 - 3.5 (16)
	3.5 - 4.0 (16)
	4.0 - 4.5 (13)
	> 4.5 (45)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (7)
	2015 - 2019 (14)
	2020 - 2024 (98)

Enzyme Classification Name

	Transferases (20)
	Hydrolases (18)

Membrane Protein Annotation

	mpstruc (3)
	OPM (3)
	MemProtMD (1)
	PDBTM (1)

Symmetry Type

	Asymmetric (100)
	Cyclic (14)
	Dihedral (2)
	Helical (1)
	Icosahedral (1)
	Octahedral (1)
	Tetrahedral (1)

SCOP Classification

	All alpha proteins (4)
	All beta proteins (2)
	Alpha and beta proteins (a/b) (1)
	Artifacts (1)

AllSelected

1 to 25 of 120 Structures

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2VE7 \| pdb_00002ve7	Download File View File

Crystal structure of a bonsai version of the human Ndc80 complex

Ciferri, C., Pasqualato, S., Dos Reis, G., Screpanti, E., Maiolica, A., Polka, J., De Luca, J.G., De Wulf, P., Salek, M., Rappsilber, J., Moores, C.A., Salmon, E.D., Musacchio, A.

(2008) Cell 133: 427

Released	2008-05-13
Method	X-RAY DIFFRACTION 2.88 Å
Organisms	Homo sapiens
Macromolecule	KINETOCHORE PROTEIN HEC1, KINETOCHORE PROTEIN SPC25 (protein) KINETOCHORE PROTEIN NUF2, KINETOCHORE PROTEIN SPC24 (protein)
Unique Ligands	GOL, IPH

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2YGD \| pdb_00002ygd	Download File View File

Molecular architectures of the 24meric eye lens chaperone alphaB- crystallin elucidated by a triple hybrid approach

Braun, N., Zacharias, M., Peschek, J., Kastenmueller, A., Zou, J., Hanzlik, M., Haslbeck, M., Rappsilber, J., Buchner, J., Weinkauf, S.

(2011) Proc Natl Acad Sci U S A 108: 20491

Released	2011-12-07
Method	ELECTRON MICROSCOPY 9.4 Å
Organisms	Homo sapiens
Macromolecule	ALPHA-CRYSTALLIN B CHAIN (protein)

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3SBG \| pdb_00003sbg	Download File View File

Crystal structure of a Prp8 C-terminal fragment

Weber, G., Santos, K., Holton, N., Wahl, M.C.

(2011) Genes Dev 25: 1601-1612

Released	2012-04-18
Method	X-RAY DIFFRACTION 3.28 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Pre-mRNA-splicing factor 8 (protein)

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3SBS \| pdb_00003sbs	Download File View File

Crystal structure of Aar2 protein

Weber, G., Santos, K.F., Holton, N., Wahl, M.C.

(2011) Genes Dev 25: 1601-1612

Released	2012-04-18
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	A1 cistron-splicing factor AAR2 (protein)

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3SBT \| pdb_00003sbt	Download File View File

Crystal structure of a Aar2-Prp8 complex

Weber, G., Santos, K.F., Holton, N., Wahl, M.C.

(2011) Genes Dev 25: 1601-1612

Released	2011-07-27
Method	X-RAY DIFFRACTION 1.799 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	A1 cistron-splicing factor AAR2 (protein) Pre-mRNA-splicing factor 8 (protein)
Unique Ligands	PGO, SO4

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4BNE \| pdb_00004bne	Download File View File

Pacsin2 Interacts with Membranes and Actin-Filaments

Kostan, J., Salzer, U., Orlova, A., Toeroe, I., Hodnik, V., Schreiner, C., Merilainen, J., Nikki, M., Virtanen, I., Lehto, V.-P., Anderluh, G., Egelman, E.H., Djinovic-Carugo, K.

(2014) EMBO Rep 15: 1154

Released	2014-05-14
Method	X-RAY DIFFRACTION 2.57 Å
Organisms	Gallus gallus
Macromolecule	PROTEIN KINASE C AND CASEIN KINASE SUBSTRATE IN NEURONS PROTEIN 2 (protein)
Unique Ligands	PGE, SO4

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4C9Y \| pdb_00004c9y	Download File View File

Structural Basis for the microtubule binding of the human kinetochore Ska complex

Abad, M., Medina, B., Santamaria, A., Zou, J., Plasberg-Hill, C., Madhumalar, A., Jayachandran, U., Redli, P.M., Rappsilber, J., Nigg, E.A., Jeyaprakash, A.A.

(2014) Nat Commun 5: 2964

Released	2014-01-22
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Homo sapiens
Macromolecule	SPINDLE AND KINETOCHORE-ASSOCIATED PROTEIN 1 (protein)

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4CA0 \| pdb_00004ca0	Download File View File

Structural Basis for the microtubule binding of the human kinetochore Ska complex

Abad, M., Medina, B., Santamaria, A., Zou, J., Plasberg-Hill, C., Madhumalar, A., Jayachandran, U., Redli, P.M., Rappsilber, J., Nigg, E.A., Jeyaprakash, A.A.

(2014) Nat Commun 5: 2964

Released	2014-01-22
Method	X-RAY DIFFRACTION 2.259 Å
Organisms	Homo sapiens
Macromolecule	SPINDLE AND KINETOCHORE-ASSOCIATED PROTEIN 1 (protein)

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4WV4 \| pdb_00004wv4	Download File View File

Heterodimer of TAF8/TAF10

Trowitzsch, S.

(2015) Nat Commun 6: 6011-6011

Released	2015-01-28
Method	X-RAY DIFFRACTION 1.909 Å
Organisms	Homo sapiens
Macromolecule	Transcription initiation factor TFIID subunit 10 (protein) Transcription initiation factor TFIID subunit 8 (protein)
Unique Ligands	CL, GOL

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4WV6 \| pdb_00004wv6	Download File View File

Heterodimer of Importin alpha 1 with nuclear localization signal of TAF8

Trowitzsch, S.

(2015) Nat Commun 6: 6011-6011

Released	2015-01-28
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Importin subunit alpha-1 (protein) Transcription initiation factor TFIID subunit 8 (protein)
Unique Ligands	EDO

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5IW7 \| pdb_00005iw7	Download File View File

Crystal structure of yeast Tsr1, a pre-40S ribosome synthesis factor

McCaughan, U.M., Jayachandran, U., Cook, A.G.

(2016) Nat Commun 7: 11789-11789

Released	2016-06-15
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Ribosome biogenesis protein TSR1,Ribosome biogenesis protein TSR1 (protein)

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5M4S \| pdb_00005m4s	Download File View File

Transcription factor TFIIA as a single chain protein

Kandiah, E., Gupta, K.

(2017) Elife 6:

Released	2017-11-29
Method	X-RAY DIFFRACTION 2.38 Å
Organisms	Homo sapiens
Macromolecule	Transcription initiation factor IIA subunit 2,Transcription initiation factor IIA subunit 1,Transcription initiation factor IIA subunit 1 (protein)

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5MG3 \| pdb_00005mg3	Download File View File

EM fitted model of bacterial holo-translocon

Schaffitzel, C., Botte, M.

(2016) Sci Rep 6: 38399-38399

Released	2016-12-28
Method	ELECTRON MICROSCOPY 14 Å
Organisms	Escherichia coli
Macromolecule	Unique protein chains: 6

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5V8F \| pdb_00005v8f	Download File View File

Structural basis of MCM2-7 replicative helicase loading by ORC-Cdc6 and Cdt1

Yuan, Z., Riera, A., Bai, L., Sun, J., Spanos, C., Chen, Z.A., Barbon, M., Rappsilber, J., Stillman, B., Speck, C., Li, H.

(2017) Nat Struct Mol Biol 24: 316-324

Released	2017-05-10
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Saccharomyces cerevisiae S288C synthetic construct
Macromolecule	Unique protein chains: 14 Unique nucleic acid chains: 2
Unique Ligands	AGS

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6H2X \| pdb_00006h2x	Download File View File

MukB coiled-coil elbow from E. coli

Buermann, F., Lowe, J.

(2019) Nat Struct Mol Biol 26: 227-236

Released	2019-03-06
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli K-12
Macromolecule	Chromosome partition protein MukB,Chromosome partition protein MukB (protein)

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6MJ8 \| pdb_00006mj8	Download File View File

Structure of Candida glabrata Csm1:Mam1 complex

Singh, N., Corbett, K.D.

(2019) Chromosoma 128: 331-354

Released	2018-11-07
Method	X-RAY DIFFRACTION 3.03 Å
Organisms	Nakaseomyces glabratus
Macromolecule	Mam1 (protein) Monopolin complex subunit CSM1 (protein)

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6MJB \| pdb_00006mjb	Download File View File

Structure of Candida glabrata Csm1:Dsn1(14-72) complex

Singh, N., Corbett, K.D.

(2019) Chromosoma 128: 331-354

Released	2018-11-07
Method	X-RAY DIFFRACTION 2.27 Å
Organisms	Nakaseomyces glabratus
Macromolecule	Kinetochore-associated protein DSN1 (protein) Monopolin complex subunit CSM1 (protein)

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6MJC \| pdb_00006mjc	Download File View File

Structure of Candida glabrata Csm1:Dsn1(43-67DD) complex

Singh, N., Corbett, K.D.

(2019) Chromosoma 128: 331-354

Released	2018-11-07
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Nakaseomyces glabratus
Macromolecule	Kinetochore-associated protein DSN1 (protein) Monopolin complex subunit CSM1 (protein)

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6MJE \| pdb_00006mje	Download File View File

Structure of Candida glabrata Csm1: S. cerevisiae Dsn1 complex

Singh, N., Corbett, K.D.

(2019) Chromosoma 128: 331-354

Released	2018-11-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Nakaseomyces glabratus Saccharomyces cerevisiae
Macromolecule	Dsn1p (protein) Monopolin complex subunit CSM1 (protein)

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6SCJ \| pdb_00006scj	Download File View File

The structure of human thyroglobulin

Coscia, F., Turk, D., Lowe, J.

(2020) Nature 578: 627-630

Released	2020-02-12
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens
Macromolecule	Thyroglobulin (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

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6SRI \| pdb_00006sri	Download File View File

Structure of the Fanconi anaemia core complex

Shakeel, S., Rajendra, E., Alcon, P., He, S., Scheres, S.H.W., Passmore, L.A.

(2019) Nature 575: 234-237

Released	2019-11-06
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Gallus gallus
Macromolecule	Unique protein chains: 27

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6SRS \| pdb_00006srs	Download File View File

Structure of the Fanconi anaemia core subcomplex

Shakeel, S., Rajendra, E., Alcon, P., He, S., Scheres, S.H.W., Passmore, L.A.

(2019) Nature 575: 234-237

Released	2019-11-06
Method	ELECTRON MICROSCOPY 4.6 Å
Organisms	Gallus gallus
Macromolecule	Unique protein chains: 18

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6T1R \| pdb_00006t1r	Download File View File

Pseudo-atomic model of a 16-mer assembly of reduced recombinant human alphaA-crystallin (non domain swapped configuration)

Peters, C., Kaiser, C.J.O., Weinkauf, S., Zacharias, M., Buchner, J.

(2019) Nat Struct Mol Biol 26: 1141-1150

Released	2019-12-11
Method	ELECTRON MICROSCOPY 9.8 Å
Organisms	Homo sapiens
Macromolecule	Alpha-crystallin A chain (protein)

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6TNF \| pdb_00006tnf	Download File View File

Structure of monoubiquitinated FANCD2 in complex with FANCI and DNA

Alcon, P., Shakeel, S., Passmore, L.A.

(2020) Nat Struct Mol Biol 27: 240-248

Released	2020-02-19
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Gallus gallus Homo sapiens synthetic construct
Macromolecule	FANCD2 (protein) Fanconi anemia complementation group I (protein) Polyubiquitin-C (protein) DNA (33-MER) (nucleic acid)

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6TNG \| pdb_00006tng	Download File View File

Structure of FANCD2 in complex with FANCI

Alcon, P., Shakeel, S., Passmore, L.A.

(2020) Nat Struct Mol Biol 27: 240-248

Released	2020-02-19
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Gallus gallus
Macromolecule	Fanconi anemia complementation group I (protein) Uncharacterized protein (protein)

1 to 25 of 120 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2VE7 | pdb_00002ve7

2YGD | pdb_00002ygd

3SBG | pdb_00003sbg

3SBS | pdb_00003sbs

3SBT | pdb_00003sbt

4BNE | pdb_00004bne

4C9Y | pdb_00004c9y

4CA0 | pdb_00004ca0

4WV4 | pdb_00004wv4

4WV6 | pdb_00004wv6

5IW7 | pdb_00005iw7

5M4S | pdb_00005m4s

5MG3 | pdb_00005mg3

5V8F | pdb_00005v8f

6H2X | pdb_00006h2x

6MJ8 | pdb_00006mj8

6MJB | pdb_00006mjb

6MJC | pdb_00006mjc

6MJE | pdb_00006mje

6SCJ | pdb_00006scj

6SRI | pdb_00006sri

6SRS | pdb_00006srs

6T1R | pdb_00006t1r

6TNF | pdb_00006tnf

6TNG | pdb_00006tng