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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Ren, Z."

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Search Summary

This query matches 156 Structures.

Refinements

Structure Determination Methodology

experimental (156)

Scientific Name of Source Organism

	synthetic construct (32)
	Homo sapiens (29)
	Anadara inaequivalvis (27)
	Rhodopseudomonas palustris CGA009 (7)
	Arabidopsis thaliana (4)
	Candida albicans (4)
	Halorhodospira halophila (4)
	Brucella melitensis bv. 1 str. 16M (3)
	Caenorhabditis elegans (3)
	Mus musculus (3)

More...

Taxonomy

	Eukaryota (78)
	Bacteria (38)
	other sequences (32)
	Riboviria (4)
	Duplodnaviria (3)
	Archaea (1)

Experimental Method

	X-RAY DIFFRACTION (140)
	ELECTRON MICROSCOPY (15)
	NEUTRON DIFFRACTION (1)

Polymer Entity Type

	Protein (153)
	RNA (3)

Refinement Resolution (Å)

	0.5 - 1.0 (19)
	1.0 - 1.5 (15)
	1.5 - 2.0 (53)
	2.0 - 2.5 (31)
	2.5 - 3.0 (23)
	3.0 - 3.5 (13)
	3.5 - 4.0 (3)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (9)
	2000 - 2004 (3)
	2005 - 2009 (3)
	2010 - 2014 (55)
	2015 - 2019 (29)
	2020 - 2024 (56)

Enzyme Classification Name

	Transferases (30)
	Hydrolases (23)
	Lyases (3)
	Isomerases (1)

Membrane Protein Annotation

	PDBTM (14)
	OPM (13)
	mpstruc (8)
	MemProtMD (6)

Symmetry Type

	Asymmetric (80)
	Cyclic (84)
	Dihedral (3)
	Helical (2)

SCOP Classification

	Alpha and beta proteins (a+b) (21)
	All alpha proteins (34)
	Alpha and beta proteins (a/b) (12)
	All beta proteins (15)
	Artifacts (15)

AllSelected

1 to 25 of 156 Structures

Page 1 of 7

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1AX9 \| pdb_00001ax9	Download File View File

ACETYLCHOLINESTERASE COMPLEXED WITH EDROPHONIUM, LAUE DATA

Raves, M.L., Ravelli, R.B.G., Sussman, J.L., Harel, M., Silman, I.

(1998) Acta Crystallogr D Biol Crystallogr 54: 1359-1366

Released	1998-02-11
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Tetronarce californica
Macromolecule	ACETYLCHOLINESTERASE (protein)
Unique Ligands	EDR

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1BBH \| pdb_00001bbh	Download File View File

ATOMIC STRUCTURE OF A CYTOCHROME C' WITH AN UNUSUAL LIGAND-CONTROLLED DIMER DISSOCIATION AT 1.8 ANGSTROMS RESOLUTION

Ren, Z., Mcree, D.E.

(1993) J Mol Biology 234: 433-445

Released	1994-01-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Allochromatium vinosum
Macromolecule	CYTOCHROME C' (protein)
Unique Ligands	HEC

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1CGN \| pdb_00001cgn	Download File View File

CYTOCHROME C'

Dobbs, A.J., Faber, H.R., Anderson, B.F., Baker, E.N.

(1996) Acta Crystallogr D Biol Crystallogr 52: 356-368

Released	1995-07-31
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Achromobacter xylosoxidans
Macromolecule	CYTOCHROME C (protein)
Unique Ligands	HEC

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1CGO \| pdb_00001cgo	Download File View File

CYTOCHROME C'

Dobbs, A.J., Faber, H.R., Anderson, B.F., Baker, E.N.

(1996) Acta Crystallogr D Biol Crystallogr 52: 356-368

Released	1995-07-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Alcaligenes sp.
Macromolecule	CYTOCHROME C (protein)
Unique Ligands	HEC

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1R5K \| pdb_00001r5k	Download File View File

Human Estrogen Receptor alpha Ligand-Binding Domain In Complex With GW5638

Wu, Y.-L., Yang, X., Ren, Z., McDonnell, D.P., Norris, J.D., Willson, T.M., Greene, G.L.

(2005) Mol Cell 18: 413-424

Released	2004-11-23
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Estrogen receptor (protein)
Unique Ligands	GW5

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1S4R \| pdb_00001s4r	Download File View File

Structure of a reaction intermediate in the photocycle of PYP extracted by a SVD-driven analysis

Schmidt, M., Pahl, R., Srajer, V., Anderson, S., Ren, Z., Ihee, H., Rajagopal, S., Moffat, K.

(2004) Proc Natl Acad Sci U S A 101: 4799-4804

Released	2004-04-13
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Halorhodospira halophila
Macromolecule	Photoactive yellow protein (protein)
Unique Ligands	HC4

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1S4S \| pdb_00001s4s	Download File View File

Reaction Intermediate in the Photocycle of PYP, intermediate occupied between 100 micro-seconds to 5 milli-seconds

Schmidt, M., Pahl, R., Srajer, V., Anderson, S., Ren, Z., Ihee, H., Rajagopal, S., Moffat, K.

(2004) Proc Natl Acad Sci U S A 101: 4799-4804

Released	2004-04-13
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Halorhodospira halophila
Macromolecule	Photoactive yellow protein (protein)
Unique Ligands	HC4

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1YVL \| pdb_00001yvl	Download File View File

Structure of Unphosphorylated STAT1

Mao, X., Ren, Z., Parker, G.N., Sondermann, H., Pastorello, M.A., Wang, W., McMurray, J.S., Demeler, B., Darnell Jr., J.E., Chen, X.

(2005) Mol Cell 17: 761-771

Released	2005-03-22
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	5-residue peptide (protein) Signal transducer and activator of transcription 1-alpha/beta (protein)
Unique Ligands	AU

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2ACK \| pdb_00002ack	Download File View File

ACETYLCHOLINESTERASE COMPLEXED WITH EDROPHONIUM, MONOCHROMATIC DATA

Raves, M.L., Sussman, J.L., Harel, M., Silman, I.

(1998) Acta Crystallogr D Biol Crystallogr 54: 1359-1366

Released	1998-02-11
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Tetronarce californica
Macromolecule	ACETYLCHOLINESTERASE (protein)
Unique Ligands	EDR

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2PYP \| pdb_00002pyp	Download File View File

PHOTOACTIVE YELLOW PROTEIN, PHOTOSTATIONARY STATE, 50% GROUND STATE, 50% BLEACHED

Genick, U.K., Borgstahl, G.E.O., Ng, K., Ren, Z., Pradervand, C., Burke, P., Srajer, V., Teng, T., Schildkamp, W., Mcree, D.E., Moffat, K., Getzoff, E.D.

(1997) Science 275: 1471-1475

Released	1998-04-29
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Halorhodospira halophila
Macromolecule	Photoactive yellow protein (protein)

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2PYR \| pdb_00002pyr	Download File View File

PHOTOACTIVE YELLOW PROTEIN, 1 NANOSECOND INTERMEDIATE (287K)

Perman, B., Srajer, V., Ren, Z., Teng, T.Y., Pradervand, C., Ursby, T., Bourgeois, D., Schotte, F., Wulff, M., Kort, R., Hellingwerf, K., Moffat, K.

(1998) Science 279: 1946-1950

Released	1999-04-06
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Halorhodospira halophila
Macromolecule	PHOTOACTIVE YELLOW PROTEIN (protein)
Unique Ligands	HC4

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3CWG \| pdb_00003cwg	Download File View File

Unphosphorylated mouse STAT3 core fragment

Ren, Z., Mao, X., Mertens, C., Krishnaraj, R., Qin, J., Mandal, P.K., Romanowshi, M.J., McMurray, J.S.

(2008) Biochem Biophys Res Commun 374: 1-5

Released	2008-07-01
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Mus musculus
Macromolecule	Signal transducer and activator of transcription 3 (protein)

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3HFH \| pdb_00003hfh	Download File View File

Crystal structure of tandem FF domains

Lu, M., Yang, J., Ren, Z., Subir, S., Bedford, M.T., Jacobson, R.H., McMurray, J.S., Chen, X.

(2009) J Mol Biology 393: 397-408

Released	2009-08-18
Method	X-RAY DIFFRACTION 2.703 Å
Organisms	Homo sapiens
Macromolecule	Transcription elongation regulator 1 (protein)

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3NHQ \| pdb_00003nhq	Download File View File

The dark Pfr structure of the photosensory core module of P. aeruginosa Bacteriophytochrome

Yang, X., Ren, Z., Kuk, J., Moffat, K.

(2011) Nature 479: 428-432

Released	2011-11-30
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Bacteriophytochrome (protein)
Unique Ligands	BLA

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3NOP \| pdb_00003nop	Download File View File

Light-induced intermediate structure L1 of Pseudomonas aeruginosa bacteriophytochrome

Yang, X., Ren, Z., Moffat, K.

(2011) Nature 479: 428-432

Released	2012-11-07
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Bacteriophytochrome (protein)
Unique Ligands	BLA

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3NOT \| pdb_00003not	Download File View File

Light-induced intermediate structure L2 of P. aeruginosa bacteriophytochrome

Yang, X., Ren, Z., Moffat, K.

(2011) Nature 479: 428-432

Released	2012-11-28
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Bacteriophytochrome (protein)
Unique Ligands	BLA

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3NOU \| pdb_00003nou	Download File View File

Light-induced intermediate structure L3 of P. aeruginosa bacteriophytochrome

Yang, X., Ren, Z., Moffat, K.

(2011) Nature 479: 428-432

Released	2012-11-28
Method	X-RAY DIFFRACTION 3 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Bacteriophytochrome (protein)
Unique Ligands	BLA

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3OXI \| pdb_00003oxi	Download File View File

Design and Synthesis of Disubstituted Thiophene and Thiazole Based Inhibitors of JNK for the Treatment of Neurodegenerative Diseases

Hom, R.K., Bowers, S., Sealy, J., Truong, A., Probst, G.D., Neitzel, M., Neitz, J., Fang, L., Brogley, L., Wu, J., Konradi, A.W., Sham, H., Toth, G., Pan, H., Yao, N., Artis, D.R.

(2010) Bioorg Med Chem Lett 20: 7303-7307

Released	2011-05-04
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Mitogen-activated protein kinase 10 (protein) Mitogen-activated protein kinase 8 interacting protein 1 (protein)
Unique Ligands	SYY

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3OY1 \| pdb_00003oy1	Download File View File

Highly Selective c-Jun N-Terminal Kinase (JNK) 2 and 3 Inhibitors with In Vitro CNS-like Pharmacokinetic Properties

Probst, G.D., Bowers, S., Sealy, J.M., Truong, A., Neitz, J., Hom, R.K., Galemmo Jr., R.A., Konradi, A.W., Sham, H.L., Quincy, D., Pan, H., Yao, N.

(2011) Bioorg Med Chem Lett 21: 315-319

Released	2011-08-17
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Mitogen-activated protein kinase 10 (protein)
Unique Ligands	589

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3PTG \| pdb_00003ptg	Download File View File

Design and Synthesis of a Novel, Orally Efficacious Tri-substituted Thiophene Based JNK Inhibitor

Bowers, S., Truong, A.P., Neitz, J., Neitzel, M., Probst, G.D., Hom, R.K., Konradi, A.W., Sham, H.L., Toth, G., Pan, H., Yao, N., Artis, D.R., Brigham, E.F., Quinn, K.P., Sauer, J., Powell, K., Ruslim, L., Bard, F., Yednock, T.A., Griswold-Prenner, I.

(2011) Bioorg Med Chem Lett 21: 1838-1843

Released	2011-03-02
Method	X-RAY DIFFRACTION 2.43 Å
Organisms	Homo sapiens
Macromolecule	C-Jun-amino-terminal kinase-interacting protein 1 (protein) Mitogen-activated protein kinase 10 (protein)
Unique Ligands	932