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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Ropartz, D."

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Search Summary

This query matches 12 Structures.

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Structure Determination Methodology

experimental (12)

Scientific Name of Source Organism

	Laetisaria arvalis (3)
	Zobellia galactanivorans (3)
	Mediterraneibacter gnavus E1 (2)
	Photorhabdus laumondii subsp. laumondii TTO1 (1)
	Thermus thermophilus (1)
	Thermus thermophilus HB8 (1)
	Trametes cinnabarina (1)

Taxonomy

	Bacteria (8)
	Eukaryota (4)

Experimental Method

X-RAY DIFFRACTION (12)

Polymer Entity Type

Protein (12)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (3)
	2.0 - 2.5 (4)
	2.5 - 3.0 (1)
	3.0 - 3.5 (1)

Release Date

	2010 - 2014 (4)
	2015 - 2019 (7)
	2020 - 2024 (1)

Enzyme Classification Name

	Hydrolases (5)
	Transferases (2)
	Lyases (1)
	Oxidoreductases (1)

Symmetry Type

	Asymmetric (8)
	Dihedral (3)
	Cyclic (1)

SCOP Classification

	Alpha and beta proteins (a/b) (3)
	Artifacts (2)
	Alpha and beta proteins (a+b) (1)
	All beta proteins (2)

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1 to 12 of 12 Structures

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2YFN \| pdb_00002yfn	Download File View File

galactosidase domain of alpha-galactosidase-sucrose kinase, AgaSK

Sulzenbacher, G., Bruel, L., Tison-Cervera, M., Pujol, A., Nicoletti, C., Perrier, J., Galinier, A., Ropartz, D., Fons, M., Pompeo, F., Giardina, T.

(2011) J Biological Chem 286: 40814

Released	2011-09-28
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Mediterraneibacter gnavus E1
Macromolecule	ALPHA-GALACTOSIDASE-SUCROSE KINASE AGASK (protein)
Unique Ligands	EDO, GOL, MG, PO4

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2YFO \| pdb_00002yfo	Download File View File

GALACTOSIDASE DOMAIN OF ALPHA-GALACTOSIDASE-SUCROSE KINASE, AGASK, in complex with galactose

Sulzenbacher, G., Bruel, L., Tison-Cervera, M., Pujol, A., Nicoletti, C., Perrier, J., Galinier, A., Ropartz, D., Fons, M., Pompeo, F., Giardina, T.

(2011) J Biological Chem 286: 40814

Released	2011-09-28
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Mediterraneibacter gnavus E1
Macromolecule	ALPHA-GALACTOSIDASE-SUCROSE KINASE AGASK (protein)
Unique Ligands	GAL, GLA, GOL, NA, PGE, PO4

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3ZJK \| pdb_00003zjk	Download File View File

crystal structure of Ttb-gly F401S mutant

Teze, D., Tran, V., Tellier, C., Dion, M., Leroux, C., Roncza, J., Czjzek, M.

(2014) Protein Eng Des Sel 27: 13

Released	2013-02-13
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Thermus thermophilus
Macromolecule	BETA GLYCOSIDASE (protein)
Unique Ligands	CL, GOL

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4BCE \| pdb_00004bce	Download File View File

crystal structure of Ttb-gly N282T mutant

Teze, D., Tran, V., Tellier, C., Dion, M., Leroux, C., Roncza, J., Czjzek, M.

(2014) Protein Eng Des Sel 27: 13

Released	2013-03-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermus thermophilus HB8
Macromolecule	BETA-GLUCOSIDASE (protein)

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5NO7 \| pdb_00005no7	Download File View File

Crystal Structure of a Xylan-active Lytic Polysaccharide Monooxygenase from Pycnoporus coccineus.

Ladeveze, S., Couturier, M., Sulzenbacher, G., Berrin, J.-G.

(2018) Nat Chem Biol 14: 306-310

Released	2018-01-17
Method	X-RAY DIFFRACTION 3.01 Å
Organisms	Trametes cinnabarina
Macromolecule	Lytic polysaccharide monooxygenase (protein)
Unique Ligands	SO4
Unique branched monosaccharides	BMA, MAN, NAG

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5OLC \| pdb_00005olc	Download File View File

Crystal structure of the 3,6-anhydro-D-galactonate cycloisomerase from Zobellia galactanivorans

Michel, G., Czjzek, M., Jam, M.

(2017) Nat Commun 8: 1685-1685

Released	2017-12-06
Method	X-RAY DIFFRACTION 2.79 Å
Organisms	Zobellia galactanivorans
Macromolecule	Galactonate dehydratase (protein)
Unique Ligands	MG

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5OPQ \| pdb_00005opq	Download File View File

A 3,6-anhydro-D-galactosidase produced by Zobellia galactanivorans. This is an exo-lytic enzyme that hydrolyzes terminal 3,6-anhydro-D-galactose from the non-reducing end of carrageenan oligosaccharides.

Ficko-Blean, E., Michel, G., Czjzek, M.

(2017) Nat Commun 8: 1685-1685

Released	2017-11-29
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Zobellia galactanivorans
Macromolecule	3,6-anhydro-D-galactosidase (protein)
Unique Ligands	CL, MPD, TRS

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6HY3 \| pdb_00006hy3	Download File View File

Three-dimensional structure of AgaC from Zobellia galactanivorans

Naretto, A., Fanuel, M., Ropartz, D., Rogniaux, H., Larocque, R., Czjzek, M., Tellier, C., Michel, G.

(2019) J Biological Chem 294: 6923-6939

Released	2019-03-13
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Zobellia galactanivorans
Macromolecule	Beta-agarase C (protein)
Unique Ligands	EDO, GOL, MG

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6IBH \| pdb_00006ibh	Download File View File

Copper binding protein from Laetisaria arvalis (LaX325)

Frandsen, K.E.H., Tandrup, T., Labourel, A., Haon, M., Berrin, J.-G., Lo Leggio, L.

(2020) Nat Chem Biol 16: 345-350

Released	2019-11-13
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Laetisaria arvalis
Macromolecule	Auxiliary activity CAZyme (protein)
Unique Ligands	CU, IMD, NAG

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6IBI \| pdb_00006ibi	Download File View File

Copper binding protein from Laetisaria arvalis (LaX325)

Frandsen, K.E.H., Tandrup, T., Labourel, A., Haon, M., Berrin, J.-G., Lo Leggio, L.

(2020) Nat Chem Biol 16: 345-350

Released	2019-11-13
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Laetisaria arvalis
Macromolecule	Auxiliary activity CAZyme (protein)
Unique Ligands	1PE, CU, IMD, NAG, PGE

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6IBJ \| pdb_00006ibj	Download File View File

Copper binding protein from Laetisaria arvalis (LaX325)

Frandsen, K.E.H., Tandrup, T., Labourel, A., Haon, M., Berrin, J.-G., Lo Leggio, L.

(2020) Nat Chem Biol 16: 345-350

Released	2019-11-13
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Laetisaria arvalis
Macromolecule	Auxiliary activity CAZyme (protein)
Unique Ligands	CU, NAG

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6T5Z \| pdb_00006t5z	Download File View File

Crystal structure of an AA10 LPMO from Photorhabdus luminescens

Munzone, A., El Kerdi, B., Reglier, M., Royant, A., Simaan, A.J., Decroos, C.

(2020) FEBS J 287: 3298-3314

Released	2020-01-15
Method	X-RAY DIFFRACTION 1.6000030918 Å
Organisms	Photorhabdus laumondii subsp. laumondii TTO1
Macromolecule	Chitin-binding type-4 domain-containing protein (protein)
Unique Ligands	CU

1 to 12 of 12 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2YFN | pdb_00002yfn

galactosidase domain of alpha-galactosidase-sucrose kinase, AgaSK

2YFO | pdb_00002yfo

GALACTOSIDASE DOMAIN OF ALPHA-GALACTOSIDASE-SUCROSE KINASE, AGASK, in complex with galactose

3ZJK | pdb_00003zjk

crystal structure of Ttb-gly F401S mutant

4BCE | pdb_00004bce

crystal structure of Ttb-gly N282T mutant

5NO7 | pdb_00005no7

Crystal Structure of a Xylan-active Lytic Polysaccharide Monooxygenase from Pycnoporus coccineus.

5OLC | pdb_00005olc

Crystal structure of the 3,6-anhydro-D-galactonate cycloisomerase from Zobellia galactanivorans

5OPQ | pdb_00005opq

A 3,6-anhydro-D-galactosidase produced by Zobellia galactanivorans. This is an exo-lytic enzyme that hydrolyzes terminal 3,6-anhydro-D-galactose from the non-reducing end of carrageenan oligosaccharides.

6HY3 | pdb_00006hy3

Three-dimensional structure of AgaC from Zobellia galactanivorans

6IBH | pdb_00006ibh

Copper binding protein from Laetisaria arvalis (LaX325)

6IBI | pdb_00006ibi

Copper binding protein from Laetisaria arvalis (LaX325)

6IBJ | pdb_00006ibj

Copper binding protein from Laetisaria arvalis (LaX325)

6T5Z | pdb_00006t5z

Crystal structure of an AA10 LPMO from Photorhabdus luminescens

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2YFN | pdb_00002yfn

2YFO | pdb_00002yfo

3ZJK | pdb_00003zjk

4BCE | pdb_00004bce

5NO7 | pdb_00005no7

5OLC | pdb_00005olc

5OPQ | pdb_00005opq

6HY3 | pdb_00006hy3

6IBH | pdb_00006ibh

6IBI | pdb_00006ibi

6IBJ | pdb_00006ibj

6T5Z | pdb_00006t5z