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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Seneci, P."

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Search Summary

This query matches 13 Structures.

Refinements

Structure Determination Methodology

experimental (13)

Scientific Name of Source Organism

Homo sapiens (13)

Taxonomy

Eukaryota (13)

Experimental Method

X-RAY DIFFRACTION (13)

Polymer Entity Type

Protein (13)

Refinement Resolution (Å)

	2.0 - 2.5 (2)
	2.5 - 3.0 (6)
	3.0 - 3.5 (5)

Release Date

	2005 - 2009 (5)
	2010 - 2014 (4)
	2015 - 2019 (2)
	2020 - 2024 (2)

Enzyme Classification Name

	Transferases (11)
	Ligases (7)

Symmetry Type

	Asymmetric (9)
	Cyclic (7)

SCOP Classification

	Small proteins (10)
	Artifacts (4)

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1 to 13 of 13 Structures

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Explore in 3D

3CLX \| pdb_00003clx	Download File View File

Crystal structure of XIAP BIR3 domain in complex with a Smac-mimetic compound, Smac005

Milani, M., Mastrangelo, E., Cossu, F.

(2008) J Mol Biology 384: 673-689

Released	2008-10-28
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Baculoviral IAP repeat-containing protein 4 (protein)
Unique Ligands	X22, ZN

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3CM2 \| pdb_00003cm2	Download File View File

Crystal Structure of XIAP BIR3 domain in complex with a Smac-mimetic compound, Smac010

Cossu, F., Mastrangelo, E., Milani, M.

(2008) J Mol Biology 384: 673-689

Released	2008-10-28
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Baculoviral IAP repeat-containing protein 4 (protein)
Unique Ligands	X23, ZN

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3CM7 \| pdb_00003cm7	Download File View File

Crystal Structure of XIAP-BIR3 domain in complex with Smac-mimetic compuond, Smac005

Mastrangelo, E., Cossu, F., Milani, M.

(2008) J Mol Biology 384: 673-689

Released	2008-10-28
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	Baculoviral IAP repeat-containing protein 4 (protein)
Unique Ligands	X22, ZN

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3EYL \| pdb_00003eyl	Download File View File

Crystal structure of XIAP BIR3 domain in complex with a Smac-mimetic compound

Cossu, F., Milani, M., Mastrangelo, E., Bolognesi, M.

(2009) Biochem Biophys Res Commun 378: 162-167

Released	2008-11-25
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Baculoviral IAP repeat-containing protein 4 (protein)
Unique Ligands	SMK, ZN

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3G76 \| pdb_00003g76	Download File View File

Crystal structure of XIAP-BIR3 in complex with a bivalent compound

Cossu, F., Milani, M., Mastrangelo, E., Bolognesi, M.

(2009) J Mol Biology 392: 630-644

Released	2009-05-12
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Baculoviral IAP repeat-containing protein 4 (protein)
Unique Ligands	CZ3, ZN

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3MUP \| pdb_00003mup	Download File View File

cIAP1-BIR3 domain in complex with the Smac-mimetic compound Smac037

Cossu, F., Malvezzi, F., Canevari, G., Milani, M.

(2010) Protein Sci 19: 2418-2429

Released	2010-11-24
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Baculoviral IAP repeat-containing protein 2 (protein)
Unique Ligands	SMK, ZN

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3OZ1 \| pdb_00003oz1	Download File View File

cIAP1-BIR3 domain in complex with the Smac-mimetic compound Smac066

Cossu, F., Malvezzi, F., Mastrangelo, E., Canevari, G., Bolognesi, M., Milani, M.

(2010) Protein Sci

Released	2010-11-24
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Baculoviral IAP repeat-containing protein 2 (protein)
Unique Ligands	BMB, ZN

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4EB9 \| pdb_00004eb9	Download File View File

cIAP1-BIR3 in complex with a divalent Smac mimetic

Cossu, F., Mastrangelo, E., Bolognesi, M., Milani, M.

(2012) PLoS One 7: e49527-e49527

Released	2012-12-05
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Baculoviral IAP repeat-containing protein 2 (protein)
Unique Ligands	0O6, ZN

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4EC4 \| pdb_00004ec4	Download File View File

XIAP-BIR3 in complex with a potent divalent Smac mimetic

Mastrangelo, E., Cossu, F., Bolognesi, M., Milani, M.

(2012) PLoS One 7: e49527-e49527

Released	2012-12-05
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Homo sapiens
Macromolecule	Baculoviral IAP repeat-containing protein 4 (protein)
Unique Ligands	0O6, 2PE, P33, ZN

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6EXW \| pdb_00006exw	Download File View File

Crystal structure of cIAP1-BIR3 in complex with a covalently bound SM

Corti, A., Cossu, F., Milani, M., Mastrangelo, E.

(2018) FEBS J 285: 3286-3298

Released	2018-08-08
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Baculoviral IAP repeat-containing protein 2 (protein)
Unique Ligands	C3K, ZN

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6EY2 \| pdb_00006ey2	Download File View File

Crystal structure of XIAP-BIR3 in complex with a cIAP1-selective SM

Cossu, F., Corti, A., Milani, M., Mastrangelo, E.

(2018) FEBS J 285: 3286-3298

Released	2018-08-08
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase XIAP (protein)
Unique Ligands	C3T, ZN

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8R02 \| pdb_00008r02	Download File View File

Crystal structure of the retromer complex VPS29/VPS35 with the ligand bis-1,3-phenyl guanylhydrazone, 2a

Milani, M., Fagnani, E.

(2024) Comput Struct Biotechnol J 23: 1088-1093

Released	2024-03-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Vacuolar protein sorting-associated protein 29 (protein) Vacuolar protein sorting-associated protein 35 (protein)
Unique Ligands	XFZ

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8R0J \| pdb_00008r0j	Download File View File

Crystal structure of the retromer complex VPS29/VPS35 with the ligand bis-1,3-phenyl guanylhydrazone, 2a

Milani, M., Fagnani, E.

(2024) Comput Struct Biotechnol J 23: 1088-1093

Released	2024-03-27
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Vacuolar protein sorting-associated protein 29 (protein) Vacuolar protein sorting-associated protein 35 (protein)
Unique Ligands	TRS, XFZ

1 to 13 of 13 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3CLX | pdb_00003clx

Crystal structure of XIAP BIR3 domain in complex with a Smac-mimetic compound, Smac005

3CM2 | pdb_00003cm2

Crystal Structure of XIAP BIR3 domain in complex with a Smac-mimetic compound, Smac010

3CM7 | pdb_00003cm7

Crystal Structure of XIAP-BIR3 domain in complex with Smac-mimetic compuond, Smac005

3EYL | pdb_00003eyl

Crystal structure of XIAP BIR3 domain in complex with a Smac-mimetic compound

3G76 | pdb_00003g76

Crystal structure of XIAP-BIR3 in complex with a bivalent compound

3MUP | pdb_00003mup

cIAP1-BIR3 domain in complex with the Smac-mimetic compound Smac037

3OZ1 | pdb_00003oz1

cIAP1-BIR3 domain in complex with the Smac-mimetic compound Smac066

4EB9 | pdb_00004eb9

cIAP1-BIR3 in complex with a divalent Smac mimetic

4EC4 | pdb_00004ec4

XIAP-BIR3 in complex with a potent divalent Smac mimetic

6EXW | pdb_00006exw

Crystal structure of cIAP1-BIR3 in complex with a covalently bound SM

6EY2 | pdb_00006ey2

Crystal structure of XIAP-BIR3 in complex with a cIAP1-selective SM

8R02 | pdb_00008r02

Crystal structure of the retromer complex VPS29/VPS35 with the ligand bis-1,3-phenyl guanylhydrazone, 2a

8R0J | pdb_00008r0j

Crystal structure of the retromer complex VPS29/VPS35 with the ligand bis-1,3-phenyl guanylhydrazone, 2a

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3CLX | pdb_00003clx

3CM2 | pdb_00003cm2

3CM7 | pdb_00003cm7

3EYL | pdb_00003eyl

3G76 | pdb_00003g76

3MUP | pdb_00003mup

3OZ1 | pdb_00003oz1

4EB9 | pdb_00004eb9

4EC4 | pdb_00004ec4

6EXW | pdb_00006exw

6EY2 | pdb_00006ey2

8R02 | pdb_00008r02

8R0J | pdb_00008r0j