RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Sokolova, O.S."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 12 Structures.

Refinements

Structure Determination Methodology

experimental (12)

Scientific Name of Source Organism

	Escherichia phage DT57C (6)
	Barley stripe mosaic virus (2)
	Escherichia coli K-12 (2)
	Desulfurococcus amylolyticus 1221n (1)
	Pseudomonas phage OBP (1)
	Tobacco mosaic virus (1)
	Tobacco mosaic virus strain OM (1)

Taxonomy

	Duplodnaviria (7)
	Bacteria (2)
	Riboviria (2)
	Archaea (1)

Experimental Method

	ELECTRON MICROSCOPY (11)
	X-RAY DIFFRACTION (1)

Polymer Entity Type

	Protein (12)
	RNA (2)

Refinement Resolution (Å)

	2.5 - 3.0 (1)
	3.0 - 3.5 (4)
	3.5 - 4.0 (2)
	4.0 - 4.5 (2)
	> 4.5 (3)

Release Date

	2015 - 2019 (4)
	2020 - 2024 (8)

Enzyme Classification Name

Isomerases (2)

Symmetry Type

	Cyclic (5)
	Helical (3)
	Icosahedral (2)
	Tetrahedral (1)
	Asymmetric (1)

AllSelected

1 to 12 of 12 Structures

Page 1 of 1

Sort by

Explore in 3D

4WWV \| pdb_00004wwv	Download File View File

Aminopeptidase APDkam598 from the archaeon Desulfurococcus kamchatkensis

Petrova, T., Boyko, K.M., Rakitina, T.V., Korzhenevskiy, D.A., Gorbacheva, M.A., Popov, V.O.

(2015) Acta Crystallogr F Struct Biol Commun 71: 277-285

Released	2015-03-04
Method	X-RAY DIFFRACTION 3.006 Å
Organisms	Desulfurococcus amylolyticus 1221n
Macromolecule	Aminopeptidase from family M42 (protein)

Explore in 3D

5A79 \| pdb_00005a79	Download File View File

Novel inter-subunit contacts in Barley Stripe Mosaic Virus revealed by cryo-EM

Clare, D.K., Pechnikova, E., Skurat, E., Makarov, V., Sokolova, O.S., Solovyev, A.G., V Orlova, E.

(2015) Structure 23: 1815

Released	2015-09-02
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Barley stripe mosaic virus Tobacco mosaic virus strain OM
Macromolecule	CAPSID PROTEIN (protein) RNA (nucleic acid)

Explore in 3D

5A7A \| pdb_00005a7a	Download File View File

Novel inter-subunit contacts in Barley Stripe Mosaic Virus revealed by cryo-EM

Clare, D.K., Pechnikova, E., Skurat, E., Makarov, V., Sokolova, O.S., Solovyev, A.G., V Orlova, E.

(2015) Structure 23: 1815

Released	2015-09-02
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Barley stripe mosaic virus Tobacco mosaic virus
Macromolecule	BARLEY STRIPE MOSAIC VIRUS NARROW (protein) RNA (nucleic acid)

Explore in 3D

6HDD \| pdb_00006hdd	Download File View File

OBP chaperonin in the nucleotide-free state

Semenyuk, P.I., Stanishneva-Konovalova, T.B., Sokolova, O.S.

(2020) J Struct Biol 209: 107439-107439

Released	2019-08-28
Method	ELECTRON MICROSCOPY 4.5 Å
Organisms	Pseudomonas phage OBP
Macromolecule	Putative chaperonin GroEL (protein)

Explore in 3D

7PBJ \| pdb_00007pbj	Download File View File

Cryo-EM structure of the GroEL-GroES complex with ADP bound to both rings ("wide" conformation).

Pichkur, E.B., Stanishneva-Konovalova, T.B.

(2021) Sci Rep 11: 18241-18241

Released	2021-11-24
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Escherichia coli K-12
Macromolecule	10 kDa chaperonin (protein) 60 kDa chaperonin (protein)
Unique Ligands	ADP, MG

Explore in 3D

7PBX \| pdb_00007pbx	Download File View File

Cryo-EM structure of the GroEL-GroES complex with ADP bound to both rings ("tight" conformation).

Pichkur, E.B., Stanishneva-Konovalova, T.B.

(2021) Sci Rep 11: 18241-18241

Released	2021-11-24
Method	ELECTRON MICROSCOPY 3.43 Å
Organisms	Escherichia coli K-12
Macromolecule	10 kDa chaperonin (protein) 60 kDa chaperonin (protein)
Unique Ligands	ADP, MG

Explore in 3D

8HO3 \| pdb_00008ho3	Download File View File

Capsid of DT57C bacteriophage in the full state

Ayala, R., Moiseenko, A.V., Chen, T.H., Kulikov, E.E., Golomidova, A.K., Orekhov, P.S., Street, M.A., Sokolova, O.S., Letarov, A.V., Wolf, M.

(2023) Nat Commun 14: 8205-8205

Released	2023-12-13
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Escherichia phage DT57C
Macromolecule	Major head protein (protein)

Explore in 3D

8HQK \| pdb_00008hqk	Download File View File

Capsid of DT57C bacteriophage in the empty state

Ayala, R., Moiseenko, A.V., Kulikov, E.E., Golomidova, A.K., Orekhov, P.S., Street, M.A., Sokolova, O.S., Letarov, A.V., Wolf, M.

(2023) Nat Commun 14: 8205-8205

Released	2023-12-13
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Escherichia phage DT57C
Macromolecule	Major head protein (protein)

Explore in 3D

8HQO \| pdb_00008hqo	Download File View File

Neck of DT57C bacteriophage in the full state

Ayala, R., Moiseenko, A.V., Chen, T.H., Kulikov, E.E., Golomidova, A.K., Orekhov, P.S., Street, M.A., Sokolova, O.S., Letarov, A.V., Wolf, M.

(2023) Nat Commun 14: 8205-8205

Released	2023-12-13
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Escherichia phage DT57C
Macromolecule	Head completion protein (protein) Portal protein (protein) Tail terminator protein (protein) Tape measure protein (protein)