RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Sun, Y.J."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 65 Structures.

Refinements

Structure Determination Methodology

experimental (65)

Scientific Name of Source Organism

	Homo sapiens (11)
	Helicobacter pylori 26695 (10)
	Vigna radiata var. radiata (9)
	Saccharolobus solfataricus P2 (8)
	synthetic construct (7)
	Escherichia coli (3)
	Geobacillus kaustophilus HTA426 (3)
	Geobacillus stearothermophilus (3)
	Gallus gallus (2)
	Leptospira santarosai serovar Shermani str. LT 821 (2)

More...

Taxonomy

	Eukaryota (28)
	Bacteria (26)
	Archaea (9)
	other sequences (7)
	Riboviria (1)
	Varidnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (64)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (65)
	DNA (9)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (14)
	2.0 - 2.5 (19)
	2.5 - 3.0 (18)
	3.0 - 3.5 (7)
	3.5 - 4.0 (2)
	4.0 - 4.5 (2)

Release Date

	1995 - 1999 (6)
	2000 - 2004 (5)
	2005 - 2009 (3)
	2010 - 2014 (7)
	2015 - 2019 (25)
	2020 - 2024 (19)

Enzyme Classification Name

	Hydrolases (16)
	Translocases (9)
	Transferases (8)
	Isomerases (6)
	Oxidoreductases (3)

Membrane Protein Annotation

	MemProtMD (11)
	PDBTM (11)
	mpstruc (11)
	OPM (3)

Symmetry Type

	Cyclic (47)
	Asymmetric (17)
	Dihedral (3)

SCOP Classification

	Alpha and beta proteins (a/b) (14)
	Artifacts (5)
	Alpha and beta proteins (a+b) (4)
	All alpha proteins (2)
	All beta proteins (3)
	Small proteins (1)

AllSelected

1 to 25 of 65 Structures

Page 1 of 3

Sort by

Explore in 3D

1AD3	Download File View File

CLASS 3 ALDEHYDE DEHYDROGENASE COMPLEX WITH NICOTINAMIDE-ADENINE-DINUCLEOTIDE

Liu, Z.-J., Rose, J., Wang, B.C.

(1997) Nat Struct Biol 4: 317-326

Released	1997-07-07
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Rattus norvegicus
Macromolecule	ALDEHYDE DEHYDROGENASE (CLASS 3) (protein)
Unique Ligands	NAD

Explore in 3D

1C72	Download File View File

TYR115, GLN165 AND TRP209 CONTRIBUTE TO THE 1,2-EPOXY-3-(P-NITROPHENOXY)PROPANE CONJUGATING ACTIVITIES OF GLUTATHIONE S-TRANSFERASE CGSTM1-1

Chern, M.K., Wu, T.C., Hsieh, C.H., Chou, C.C., Liu, L.F., Kuan, I.C., Yeh, Y.H., Hsiao, C.D., Tam, M.F.

(2000) J Mol Biol 300: 1257-1269

Released	2000-08-30
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Gallus gallus
Macromolecule	PROTEIN (GLUTATHIONE S-TRANSFERASE) (protein)
Unique Ligands	EPY

Explore in 3D

1C7Q	Download File View File

THE CRYSTAL STRUCTURE OF PHOSPHOGLUCOSE ISOMERASE/AUTOCRINE MOTILITY FACTOR/NEUROLEUKIN COMPLEXED WITH ITS CARBOHYDRATE PHOSPHATE INHIBITORS AND ITS SUBSTRATE RECOGNITION MECHANISM

Chou, C.-C., Meng, M., Sun, Y.-J., Hsiao, C.-D.

(2000) J Biol Chem 275: 23154-23160

Released	2000-09-13
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	PHOSPHOGLUCOSE ISOMERASE (protein)
Unique Ligands	BE1

Explore in 3D

1C7R	Download File View File

THE CRYSTAL STRUCTURE OF PHOSPHOGLUCOSE ISOMERASE/AUTOCRINE MOTILITY FACTOR/NEUROLEUKIN COMPLEXED WITH ITS CARBOHYDRATE PHOSPHATE INHIBITORS AND ITS SUBSTRATE RECOGNITION MECHANISM

Chou, C.-C., Meng, M., Sun, Y.-J., Hsiao, C.-D.

(2000) J Biol Chem 275: 23154-23160

Released	2000-09-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	PHOSPHOGLUCOSE ISOMERASE (protein)
Unique Ligands	PA5

Explore in 3D

1E9L	Download File View File

The crystal structure of novel mammalian lectin Ym1 suggests a saccharide binding site

Hsiao, C.D., Sun, Y.J.

(2001) J Biol Chem 276: 17507

Released	2001-03-01
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mus musculus
Macromolecule	YM1 SECRETORY PROTEIN (protein)
Unique Ligands	GCS

Explore in 3D

1GGG	Download File View File

GLUTAMINE BINDING PROTEIN OPEN LIGAND-FREE STRUCTURE

Hsiao, C.-D., Sun, Y.-J., Rose, J., Wang, B.-C.

(1996) J Mol Biol 262: 225-242

Released	1996-11-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	GLUTAMINE BINDING PROTEIN (protein)

Explore in 3D

1GSU	Download File View File

AN AVIAN CLASS-MU GLUTATHIONE S-TRANSFERASE, CGSTM1-1 AT 1.94 ANGSTROM RESOLUTION

Sun, Y.-J., Kuan, C., Tam, M.F., Hsiao, C.-D.

(1998) J Mol Biol 278: 239-252

Released	1998-03-04
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Gallus gallus
Macromolecule	CLASS-MU GLUTATHIONE S-TRANSFERASE (protein)
Unique Ligands	GTX

Explore in 3D

1H65	Download File View File

Crystal structure of pea Toc34 - a novel GTPase of the chloroplast protein translocon

Sun, Y.J., Forouhar, F., Li, H.M., Tu, S.L., Kao, S., Shr, H.L., Chou, C.C., Hsiao, C.D.

(2002) Nat Struct Biol 9: 95

Released	2002-01-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pisum sativum
Macromolecule	CHLOROPLAST OUTER ENVELOPE PROTEIN OEP34 (protein)
Unique Ligands	GDP, MG

Explore in 3D

1KXI	Download File View File

STRUCTURE OF CYTOTOXIN HOMOLOG PRECURSOR

Sun, Y.-J., Wu, W.-G., Chiang, C.-M., Hsin, A.-Y., Hsiao, C.-D.

(1997) Biochemistry 36: 2403-2413

Released	1997-04-21
Method	X-RAY DIFFRACTION 2.19 Å
Organisms	Naja atra
Macromolecule	CARDIOTOXIN V (protein)

Explore in 3D

1WDN	Download File View File

GLUTAMINE-BINDING PROTEIN

Sun, Y.-J., Rose, J., Wang, B.-C., Hsiao, C.-D.

(1998) J Mol Biol 278: 219-229

Released	1998-05-06
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Escherichia coli
Macromolecule	GLUTAMINE BINDING PROTEIN (protein)
Unique Ligands	GLN

Explore in 3D

2PGI	Download File View File

THE CRYSTAL STRUCTURE OF PHOSPHOGLUCOSE ISOMERASE-AN ENZYME WITH AUTOCRINE MOTILITY FACTOR ACTIVITY IN TUMOR CELLS

Sun, Y.-J., Chou, C.-C., Chen, W.-S., Meng, M., Hsiao, C.-D.

(1999) Proc Natl Acad Sci U S A 96: 5412-5417

Released	1999-06-15
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	PHOSPHOGLUCOSE ISOMERASE (protein)

Explore in 3D

2VYE	Download File View File

Crystal Structure of the DnaC-ssDNA complex

Lo, Y.H., Tsai, K.L., Sun, Y.J., Hsiao, C.D.

(2009) Nucleic Acids Res 37: 804

Released	2008-12-30
Method	X-RAY DIFFRACTION 4.1 Å
Organisms	Escherichia coli Geobacillus kaustophilus HTA426
Macromolecule	REPLICATIVE DNA HELICASE (protein) 5'-D(TPTPTPTPTPTPTPTP*TP)-3' (nucleic acid)

Explore in 3D

2VYF	Download File View File

Crystal Structure of the DnaC

Lo, Y.H., Tsai, K.L., Sun, Y.J., Hsiao, C.D.

(2009) Nucleic Acids Res 37: 804

Released	2008-12-30
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Geobacillus kaustophilus HTA426
Macromolecule	REPLICATIVE DNA HELICASE (protein)
Unique Ligands	AU

Explore in 3D

2W58	Download File View File

Crystal Structure of the DnaI

Tsai, K.L., Lo, Y.H., Sun, Y.J., Hsiao, C.D.

(2009) J Mol Biol 393: 1056

Released	2009-12-22
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Geobacillus kaustophilus HTA426
Macromolecule	PRIMOSOME COMPONENT (HELICASE LOADER) (protein)
Unique Ligands	ADP, MG, PO4

Explore in 3D

3A5U	Download File View File

Promiscuity and specificity in DNA binding to SSB: Insights from the structure of the Mycobacterium smegmatis SSB-ssDNA complex

Kaushal, P.S., Manjunath, G.P., Sekar, K., Muniyappa, K., Vijayan, M.

(2009) To be published

Released	2010-08-18
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	Single-stranded DNA-binding protein (protein) DNA (31-MER) (nucleic acid)

Explore in 3D

3K53	Download File View File

Crystal Structure of NFeoB from P. furiosus

Eng, E.T., Dong, G., Unger, V.M.

(2010) J Struct Biol 170: 501-512

Released	2010-05-26
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Pyrococcus furiosus
Macromolecule	Ferrous iron transport protein b (protein)

Explore in 3D

3SZA	Download File View File

Crystal structure of human ALDH3A1 - apo form

Khanna, M., Hurley, T.D.

(2011) J Biol Chem 286: 43486-43494

Released	2011-11-02
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Homo sapiens
Macromolecule	Aldehyde dehydrogenase, dimeric NADP-preferring (protein)
Unique Ligands	ACT, K

Explore in 3D

3SZB	Download File View File

Crystal structure of human ALDH3A1 modified with the beta-elimination product of Aldi-1; 1-phenyl- 2-propen-1-one

Khanna, M., Hurley, T.D.

(2011) J Biol Chem 286: 43486-43494

Released	2011-11-02
Method	X-RAY DIFFRACTION 1.51 Å
Organisms	Homo sapiens
Macromolecule	Aldehyde dehydrogenase (protein)
Unique Ligands	ACT, I1E, K

Explore in 3D

4A7W	Download File View File

Crystal structure of uridylate kinase from Helicobacter pylori

Chu, C.H., Chen, P.C., Liu, M.H., Sun, Y.J.

(2012) Acta Crystallogr D Biol Crystallogr 68: 773

Released	2012-06-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Helicobacter pylori 26695
Macromolecule	URIDYLATE KINASE (protein)
Unique Ligands	GOL, GTP

Explore in 3D

4A7X	Download File View File

Crystal structure of uridylate kinase from Helicobacter pylori

Chu, C.H., Liu, M.H., Chen, P.C., Sun, Y.J.

(2012) Acta Crystallogr D Biol Crystallogr 68: 773

Released	2012-06-27
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Helicobacter pylori 26695
Macromolecule	URIDYLATE KINASE (protein)
Unique Ligands	UDP

Explore in 3D

4GKG	Download File View File

Crystal structure of the S-Helix Linker

Liu, J.W., Lu, D., Sun, Y.J., Wen, J., Yang, Y., Yang, J.G., Wei, X.L., Zhang, X.D., Wang, Y.P.

To be published

Released	2013-08-28
Method	X-RAY DIFFRACTION 1.695 Å
Organisms	Sinorhizobium meliloti 1021
Macromolecule	C4-dicarboxylate transport sensor protein dctB (protein)
Unique Ligands	PO4

Explore in 3D

4NXP	Download File View File

Crystal Structure of Free T-cell Lymphoma Invasion and Metastasis-1 PDZ Domain Quadruple Mutant (QM)

Liu, X., Speckhard, D.C., Shepherd, T.R., Hengel, S.R., Fuentes, E.J.

(2016) Structure 24: 2053-2066

Released	2015-05-13
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	T-lymphoma invasion and metastasis-inducing protein 1 (protein)

Explore in 3D

4NXQ	Download File View File

Crystal Structure of T-cell Lymphoma Invasion and Metastasis-1 PDZ Domain Quadruple Mutant (QM) in Complex With Caspr4 Peptide

Liu, X., Speckhard, D.C., Shepherd, T.R., Hengel, S.R., Fuentes, E.J.

(2016) Structure 24: 2053-2066

Released	2015-05-13
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Contactin-associated protein-like 4 peptide (protein) T-lymphoma invasion and metastasis-inducing protein 1 (protein)

Explore in 3D

4NXR	Download File View File

Crystal Structure of T-cell Lymphoma Invasion and Metastasis-1 PDZ Domain Quadruple Mutant (QM) in Complex With Neurexin-1 Peptide

Liu, X., Speckhard, D.C., Shepherd, T.R., Hengel, S.R., Fuentes, E.J.

(2016) Structure 24: 2053-2066

Released	2015-05-13
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Neurexin-2-beta Peptide (protein) T-lymphoma invasion and metastasis-inducing protein 1 (protein)
Unique Ligands	ANS, EPE

Explore in 3D

4UMK	Download File View File

The complex of Spo0J and parS DNA in chromosomal partition system

Chen, B.W., Chu, C.H., Tung, J.Y., Hsu, C.E., Hsiao, C.D., Sun, Y.J.

(2015) Proc Natl Acad Sci U S A 112: 6613-6618

Released	2015-05-13
Method	X-RAY DIFFRACTION 3.096 Å
Organisms	Bacillus subtilis Helicobacter pylori 26695
Macromolecule	PROBABLE CHROMOSOME-PARTITIONING PROTEIN PARB (protein) DNA (nucleic acid)
Unique Ligands	SO4

1 to 25 of 65 Structures

Page 1 of 3

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

All questions and comments will receive a response in a timely manner.

Use this form for questions about RCSB.org and RCSB PDB services.
Please attach a screenshot when reporting an issue, if possible.
To update/release your in-progress structure depositions:
access the OneDep Communication panel
For questions/corrections to specific PDB entries, including citation updates:
email deposit-help@mail.wwpdb.org

First Name

Last Name

Subject

Question, Comment, Feedback or Other

Attach File(s)
Use CTRL or Shift keys to select more than one file ( files max)

I agree to the Help Desk Privacy Policy

Optional: To help us learn more about our users, what is your:

Institution Type

Role

Main Research Interest

Thank you for providing your feedback! Someone will be in touch with you shortly. This window will automatically close in 5 seconds.

Apologies, our feedback server is currently unavailable and we are troubleshooting the issue. In the meantime, please copy and paste the below information into an email addressed to info@rcsb.org

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification