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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Trudeau, D.L."

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This query matches 4 Structures.

Refinements

Structure Determination Methodology

experimental (4)

Scientific Name of Source Organism

	Brevundimonas diminuta (3)
	Rhodopseudomonas palustris BisB18 (1)

Taxonomy

Bacteria (4)

Experimental Method

X-RAY DIFFRACTION (4)

Polymer Entity Type

Protein (4)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.5 - 3.0 (1)

Release Date

2015 - 2019 (4)

Enzyme Classification Name

Hydrolases (3)

Symmetry Type

	Cyclic (3)
	Dihedral (1)

SCOP Classification

Alpha and beta proteins (a/b) (3)

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1 to 4 of 4 Structures

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6GBJ \| pdb_00006gbj	Download File View File

Repertoires of functionally diverse enzymes through computational design at epistatic active-site positions

Khersonsky, O., Lipsh, R., Avizemer, Z., Goldsmith, M., Ashani, Y., Leader, H., Dym, O., Rogotner, S., Trudeau, D., Tawfik, D.S., Fleishman, S.J.

(2018) Mol Cell 72: 178-186.e5

Released	2018-10-24
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Brevundimonas diminuta
Macromolecule	Parathion hydrolase (protein)
Unique Ligands	EDO, FMT, SO4, ZN

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6GBK \| pdb_00006gbk	Download File View File

Repertoires of functionally diverse enzymes through computational design at epistatic active-site positions

Khersonsky, O., Lipsh, R., Avizemer, Z., Goldsmith, M., Ashani, Y., Leader, H., Dym, O., Rogotner, S., Trudeau, D., Tawfik, D.S., Fleishman, S.J.

(2018) Mol Cell 72: 178-186.e5

Released	2018-10-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Brevundimonas diminuta
Macromolecule	Parathion hydrolase (protein)
Unique Ligands	FMT, TRS, ZN

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6GBL \| pdb_00006gbl	Download File View File

Repertoires of functionally diverse enzymes through computational design at epistatic active-site positions

Khersonsky, O., Lipsh, R., Avizemer, Z., Goldsmith, M., Ashani, Y., Leader, H., Dym, O., Rogotner, S., Trudeau, D., Tawfik, D.S., Fleishman, S.J.

(2018) Mol Cell 72: 178-186.e5

Released	2018-10-24
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Brevundimonas diminuta
Macromolecule	Parathion hydrolase (protein)
Unique Ligands	CAC, EDO, FMT, ZN

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6GVS \| pdb_00006gvs	Download File View File

Engineered glycolyl-CoA reductase comprising 8 mutations with bound NADP+

Zarzycki, J., Trudeau, D., Scheffen, M., Erb, T.J., Tawfik, D.S.

(2018) Proc Natl Acad Sci U S A 115: E11455-E11464

Released	2018-11-28
Method	X-RAY DIFFRACTION 2.579 Å
Organisms	Rhodopseudomonas palustris BisB18
Macromolecule	Aldehyde dehydrogenase (protein)
Unique Ligands	K, NAP

1 to 4 of 4 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

6GBJ | pdb_00006gbj

Repertoires of functionally diverse enzymes through computational design at epistatic active-site positions

6GBK | pdb_00006gbk

Repertoires of functionally diverse enzymes through computational design at epistatic active-site positions

6GBL | pdb_00006gbl

Repertoires of functionally diverse enzymes through computational design at epistatic active-site positions

6GVS | pdb_00006gvs

Engineered glycolyl-CoA reductase comprising 8 mutations with bound NADP+

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

6GBJ | pdb_00006gbj

Repertoires of functionally diverse enzymes through computational design at epistatic active-site positions

6GBK | pdb_00006gbk

Repertoires of functionally diverse enzymes through computational design at epistatic active-site positions

6GBL | pdb_00006gbl

Repertoires of functionally diverse enzymes through computational design at epistatic active-site positions

6GVS | pdb_00006gvs

Engineered glycolyl-CoA reductase comprising 8 mutations with bound NADP+