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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Wilson, M.D."

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Search Summary

This query matches 22 Structures.

Refinements

Structure Determination Methodology

experimental (22)

Scientific Name of Source Organism

	Homo sapiens (15)
	Trypanosoma brucei brucei TREU927 (4)
	Haliangium ochraceum DSM 14365 (3)
	synthetic construct (3)
	Felis catus (1)
	Human spumaretrovirus (1)
	Pyrobaculum filamentous virus 1 (1)
	Xenopus laevis (1)

Taxonomy

	Eukaryota (19)
	Bacteria (3)
	other sequences (3)
	Adnaviria (1)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (13)
	ELECTRON MICROSCOPY (9)

Polymer Entity Type

	Protein (22)
	DNA (6)

Refinement Resolution (Å)

	1.0 - 1.5 (8)
	1.5 - 2.0 (3)
	2.0 - 2.5 (2)
	2.5 - 3.0 (3)
	3.0 - 3.5 (3)
	3.5 - 4.0 (1)
	4.0 - 4.5 (1)
	> 4.5 (1)

Release Date

	2015 - 2019 (13)
	2020 - 2024 (9)

Enzyme Classification Name

	Transferases (6)
	Hydrolases (4)
	Oxidoreductases (2)
	Isomerases (1)

Symmetry Type

	Asymmetric (16)
	Cyclic (5)
	Icosahedral (1)

AllSelected

1 to 22 of 22 Structures

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5KGF \| pdb_00005kgf	Download File View File

Structural model of 53BP1 bound to a ubiquitylated and methylated nucleosome, at 4.5 A resolution

Wilson, M.D., Benlekbir, S., Sicheri, F., Rubinstein, J.L., Durocher, D.

(2016) Nature 536: 100-103

Released	2016-07-27
Method	ELECTRON MICROSCOPY 4.54 Å
Organisms	Homo sapiens Xenopus laevis synthetic construct
Macromolecule	Unique protein chains: 6 Unique nucleic acid chains: 2

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5NNC \| pdb_00005nnc	Download File View File

Crystal Structure of the first bromodomain of human BRD4 in complex with a diacetylated histone 4 peptide (H3K9ac/K14ac)

Filippakopoulos, P., Picaud, S., Pike, A.C.W., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C.

(2019) Mol Cell 73: 621-638.e17

Released	2018-05-16
Method	X-RAY DIFFRACTION 2.22 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein) Histone H3 (protein)

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5NND \| pdb_00005nnd	Download File View File

Crystal Structure of the first bromodomain of human BRD4 in complex with a diacetylated histone 4 peptide (H3K9ac/K14ac)

Filippakopoulos, P., Picaud, S., Pike, A.C.W., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C.

(2019) Mol Cell 73: 621-638.e17

Released	2018-05-16
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein) Histone H3 (protein)
Unique Ligands	EDO

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5NNE \| pdb_00005nne	Download File View File

Crystal Structure of the first bromodomain of human BRD4 in complex with a diacetylated TOP2A peptide (K1201ac/K1204ac)

Filippakopoulos, P., Picaud, S., Krojer, T., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C.

(2019) Mol Cell 73: 621-638.e17

Released	2018-05-16
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein) GKA(ALY)GK(ALY)TQMY (protein)
Unique Ligands	EDO

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5NNF \| pdb_00005nnf	Download File View File

Crystal Structure of the first bromodomain of human BRD4 in complex with an acetylated BAZ1B peptide (K221ac)

Filippakopoulos, P., Picaud, S., Krojer, T., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C.

(2019) Mol Cell 73: 621-638.e17

Released	2018-05-16
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein) FLPH(ALY)YDVKL (protein)

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5NNG \| pdb_00005nng	Download File View File

Crystal Structure of the first bromodomain of human BRD4 in complex with an acetylated SRPK1 peptide (K585ac)

Filippakopoulos, P., Picaud, S., Newman, J., Sorrell, F., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Structural Genomics Consortium (SGC)

(2019) Mol Cell 73: 621-638.e17

Released	2018-05-16
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein) VAG(ALY)YS(ALY)EFFY (protein)
Unique Ligands	EDO

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6G0O \| pdb_00006g0o	Download File View File

Crystal Structure of the first bromodomain of human BRD4 in complex with an acetylated ATRX peptide (K1030ac/K1033ac)

Filippakopoulos, P., Picaud, S., Newman, J., Sorrell, F., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C.

(2019) Mol Cell 73: 621-638.e17

Released	2018-11-28
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein) Transcriptional regulator ATRX (protein)
Unique Ligands	EDO

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6G0P \| pdb_00006g0p	Download File View File

Crystal Structure of the first bromodomain of human BRD4 in complex with an acetylated E2F1 peptide (K117ac/K120ac)

Filippakopoulos, P., Picaud, S., Krojer, T., Sorrell, F., Pike, A.C.W., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C.

(2019) Mol Cell 73: 621-638.e17

Released	2018-11-28
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein) Transcription factor E2F1 (protein)
Unique Ligands	EDO

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6G0Q \| pdb_00006g0q	Download File View File

Crystal Structure of the first bromodomain of human BRD4 in complex with an acetylated GATA1 peptide (K312ac/K315ac)

Filippakopoulos, P., Picaud, S., Newman, J., Sorrell, F., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C.

(2019) Mol Cell 73: 621-638.e17

Released	2018-11-28
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein) Erythroid transcription factor (protein)
Unique Ligands	EDO

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6G0R \| pdb_00006g0r	Download File View File

Crystal Structure of the first bromodomain of human BRD4 in complex with an acetylated POLR2A peptide (K775ac/K778ac)

Filippakopoulos, P., Picaud, S., Pike, A.C.W., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C.

(2019) Mol Cell 73: 621-638.e17

Released	2018-11-28
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein) DNA-directed RNA polymerase II subunit RPB1 (protein)
Unique Ligands	EDO

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6G0S \| pdb_00006g0s	Download File View File

Crystal Structure of the first bromodomain of human BRD4 in complex with an acetylated SIRT7 peptide (K272ac/K275ac)

Filippakopoulos, P., Picaud, S., Krojer, T., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C.

(2019) Mol Cell 73: 621-638.e17

Released	2018-11-28
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein) NAD-dependent protein deacetylase sirtuin-7 (protein)
Unique Ligands	EDO

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6R0C \| pdb_00006r0c	Download File View File

Human-D02 Nucleosome Core Particle with biotin-streptavidin label

Pye, V.E., Wilson, M.D., Cherepanov, P., Costa, A.

(2019) Nat Commun 10: 4189-4189

Released	2019-09-25
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 4 Unique nucleic acid chains: 2
Unique Ligands	MN

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6RNY \| pdb_00006rny	Download File View File

PFV intasome - nucleosome strand transfer complex

Pye, V.E., Renault, L., Maskell, D.P., Cherepanov, P., Costa, A.

(2019) Nat Commun 10: 4189-4189

Released	2019-09-25
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Homo sapiens Human spumaretrovirus Pyrobaculum filamentous virus 1
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 5
Unique Ligands	MG

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7ODW \| pdb_00007odw	Download File View File

Model of Haliangium ochraceum encapsulin from icosahedral single particle reconstruction

Marles-Wright, J., Basle, A., Clarke, D.J., Ross, J.

(2022) Sci Adv 8: eabj4461-eabj4461

Released	2022-03-09
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Haliangium ochraceum DSM 14365
Macromolecule	Linocin_M18 bacteriocin protein (protein)

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7OE2 \| pdb_00007oe2	Download File View File

Model of closed pentamer of the Haliangium ochraceum encapsulin from symmetry expansion of icosahedral single particle reconstruction

Marles-Wright, J., Basle, A., Clarke, D.J., Ross, J.

(2022) Sci Adv 8: eabj4461-eabj4461

Released	2022-02-09
Method	ELECTRON MICROSCOPY 2.4 Å
Organisms	Haliangium ochraceum DSM 14365
Macromolecule	Haliangium ochraceum Encapsulated ferritin localisation sequence (protein) Linocin_M18 bacteriocin protein (protein)

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7OEU \| pdb_00007oeu	Download File View File

Model of open pentamer of the Haliangium ochraceum encapsulin from symmetry expansion of icosahedral single particle reconstruction

Marles-Wright, J., Basle, A., Clarke, D.J., Ross, J.

(2022) Sci Adv 8: eabj4461-eabj4461

Released	2022-02-09
Method	ELECTRON MICROSCOPY 2.64 Å
Organisms	Haliangium ochraceum DSM 14365
Macromolecule	Haliangium ochraceum encapsulated ferritin (protein) Linocin_M18 bacteriocin protein (protein)

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8COM \| pdb_00008com	Download File View File

Structure of the Nucleosome Core Particle from Trypanosoma brucei

Burdett, H., Deak, G., Wilson, M.D.

(2023) Nucleic Acids Res 51: 7882-7899

Released	2023-07-12
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Trypanosoma brucei brucei TREU927 synthetic construct
Macromolecule	Unique protein chains: 4 Unique nucleic acid chains: 2

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8OFF \| pdb_00008off	Download File View File

Structure of BARD1 ARD-BRCTs in complex with H2AKc15ub nucleosomes (Map1)

Foglizzo, M., Burdett, H., Wilson, M.D., Zeqiraj, E.

(2023) Nucleic Acids Res 51: 11080-11103

Released	2023-10-11
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Felis catus Homo sapiens
Macromolecule	Unique protein chains: 6 Unique nucleic acid chains: 1

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8QZM \| pdb_00008qzm	Download File View File

Structure of DNMT3A1 UDR region bound to H2AK119ub nucleosome

Burdett, H., Wapenaar, H., Wilson, M.D.

(2024) EMBO Rep 25: 5743-5779

Released	2024-10-23
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 2

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9EVQ \| pdb_00009evq	Download File View File

Crystal structure of the kinetoplastid kinetochore protein KKT23 acetyltransferase domain from Trypanosoma brucei

Ludzia, P., Ishii, M., Akiyoshi, B.

(2025) Structure 33: 123

Released	2024-08-28
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Trypanosoma brucei brucei TREU927
Macromolecule	N-acetyltransferase domain-containing protein (protein)
Unique Ligands	ACO

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9EVR \| pdb_00009evr	Download File View File

Crystal structure of the kinetoplastid kinetochore protein KKT23 N-terminal domain from Trypanosoma brucei

Ludzia, P., Ishii, M., Akiyoshi, B.

(2025) Structure 33: 123

Released	2024-08-28
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Trypanosoma brucei brucei TREU927
Macromolecule	N-acetyltransferase domain-containing protein (protein)

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9F5Q \| pdb_00009f5q	Download File View File

Crystal structure of selenomethionine-labelled kinetoplastid kinetochore protein KKT23 acetyltransferase domain from Trypanosoma brucei

Ludzia, P., Ishii, M., Akiyoshi, B.

(2025) Structure 33: 123

Released	2024-08-28
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Trypanosoma brucei brucei TREU927
Macromolecule	N-acetyltransferase domain-containing protein (protein)
Unique Ligands	ACO

1 to 22 of 22 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

5KGF | pdb_00005kgf

5NNC | pdb_00005nnc

5NND | pdb_00005nnd

5NNE | pdb_00005nne

5NNF | pdb_00005nnf

5NNG | pdb_00005nng

6G0O | pdb_00006g0o

6G0P | pdb_00006g0p

6G0Q | pdb_00006g0q

6G0R | pdb_00006g0r

6G0S | pdb_00006g0s

6R0C | pdb_00006r0c

6RNY | pdb_00006rny

7ODW | pdb_00007odw

7OE2 | pdb_00007oe2

7OEU | pdb_00007oeu

8COM | pdb_00008com

8OFF | pdb_00008off

8QZM | pdb_00008qzm

9EVQ | pdb_00009evq

9EVR | pdb_00009evr

9F5Q | pdb_00009f5q