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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Wong, K.S."

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Search Summary

This query matches 10 Structures.

Refinements

Structure Determination Methodology

experimental (10)

Scientific Name of Source Organism

	Homo sapiens (6)
	Neisseria meningitidis (2)
	synthetic construct (2)
	Escherichia coli (1)
	Neisseria meningitidis MC58 (1)

Taxonomy

	Eukaryota (6)
	Bacteria (4)
	other sequences (2)

Experimental Method

X-RAY DIFFRACTION (10)

Polymer Entity Type

Protein (10)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (4)
	2.5 - 3.0 (3)
	3.0 - 3.5 (2)

Release Date

	2015 - 2019 (2)
	2020 - 2024 (8)

Enzyme Classification Name

Hydrolases (10)

Symmetry Type

	Dihedral (9)
	Cyclic (1)

SCOP Classification

Alpha and beta proteins (a/b) (1)

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1 to 10 of 10 Structures

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5DKP \| pdb_00005dkp	Download File View File

Crystal Structure of N. meningitidis ClpP in complex with agonist ADEP A54556.

Goodreid, J.D., Janetzko, J., Santa Maria Jr., J.P., Wong, K., Leung, E., Eger, B.T., Bryson, S., Pai, E.F., Gray-Owen, S.D., Walker, S., Houry, W.A., Batey, R.A.

(2016) J Med Chem 59: 624-646

Released	2016-01-27
Method	X-RAY DIFFRACTION 2.381 Å
Organisms	Neisseria meningitidis MC58 synthetic construct
Macromolecule	ATP-dependent Clp protease proteolytic subunit (protein) agonist ADEP A54556 (protein)
Unique Ligands	K, NA

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6BBA \| pdb_00006bba	Download File View File

Crystal structure of human mitochondrial ClpP complex with acyldepsipeptide ADEP-28

Mabanglo, M.F., Houry, W.A.

(2018) Cell Chem Biol 25: 1017-1030.e9

Released	2018-07-11
Method	X-RAY DIFFRACTION 2.796 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	ATP-dependent Clp protease proteolytic subunit, mitochondrial (protein) Acyldepsipeptide ADEP-28 (protein)

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6W9T \| pdb_00006w9t	Download File View File

Crystal structure of Neisseria meningitidis ClpP protease complex with small molecule activator ACP1-06

Mabanglo, M.F., Houry, W.A.

(2020) ACS Infect Dis 6: 3224-3236

Released	2020-12-09
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Neisseria meningitidis
Macromolecule	ATP-dependent Clp protease proteolytic subunit (protein)
Unique Ligands	K, KHS

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7UVM \| pdb_00007uvm	Download File View File

Crystal structure of human ClpP protease in complex with TR-27

Mabanglo, M.F., Houry, W.A.

(2023) Structure 31: 185

Released	2023-01-11
Method	X-RAY DIFFRACTION 2.19 Å
Organisms	Homo sapiens
Macromolecule	ATP-dependent Clp protease proteolytic subunit, mitochondrial (protein)
Unique Ligands	OX0

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7UVN \| pdb_00007uvn	Download File View File

Crystal structure of human ClpP protease in complex with TR-57

Mabanglo, M.F., Houry, W.A.

(2023) Structure 31: 185

Released	2023-01-11
Method	X-RAY DIFFRACTION 3.11 Å
Organisms	Homo sapiens
Macromolecule	ATP-dependent Clp protease proteolytic subunit, mitochondrial (protein)
Unique Ligands	P3O

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7UVR \| pdb_00007uvr	Download File View File

Crystal structure of human ClpP protease in complex with TR-65

Mabanglo, M.F., Houry, W.A.

(2023) Structure 31: 185

Released	2023-01-11
Method	X-RAY DIFFRACTION 2.86 Å
Organisms	Homo sapiens
Macromolecule	ATP-dependent Clp protease proteolytic subunit, mitochondrial (protein)
Unique Ligands	PJF

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7UVU \| pdb_00007uvu	Download File View File

Crystal structure of human ClpP protease in complex with TR-107

Mabanglo, M.F., Houry, W.A.

(2023) Structure 31: 185

Released	2023-01-11
Method	X-RAY DIFFRACTION 3.24 Å
Organisms	Homo sapiens
Macromolecule	ATP-dependent Clp protease proteolytic subunit, mitochondrial (protein)
Unique Ligands	OY9

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7UW0 \| pdb_00007uw0	Download File View File

Crystal structure of human ClpP protease in complex with TR-133

Mabanglo, M.F., Houry, W.A.

(2023) Structure 31: 185

Released	2023-01-11
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	ATP-dependent Clp protease proteolytic subunit, mitochondrial (protein)
Unique Ligands	P4I

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8SZM \| pdb_00008szm	Download File View File

Crystal structure of E. coli ClpP protease in complex with phosphine oxide compound ACP6-12

Mabanglo, M.F., Houry, W.A.

(2024) J Med Chem 67: 15131-15147

Released	2024-09-18
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Escherichia coli
Macromolecule	ATP-dependent Clp protease proteolytic subunit (protein)
Unique Ligands	X3O

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8SZN \| pdb_00008szn	Download File View File

Crystal structure of Neisseria meningitidis ClpP protease in complex with phosphine oxide compound ACP6-12

Mabanglo, M.F., Houry, W.A.

(2024) J Med Chem 67: 15131-15147

Released	2024-09-18
Method	X-RAY DIFFRACTION 2.33 Å
Organisms	Neisseria meningitidis
Macromolecule	ATP-dependent Clp protease proteolytic subunit (protein)
Unique Ligands	X3O

1 to 10 of 10 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

5DKP | pdb_00005dkp

Crystal Structure of N. meningitidis ClpP in complex with agonist ADEP A54556.

6BBA | pdb_00006bba

Crystal structure of human mitochondrial ClpP complex with acyldepsipeptide ADEP-28

6W9T | pdb_00006w9t

Crystal structure of Neisseria meningitidis ClpP protease complex with small molecule activator ACP1-06

7UVM | pdb_00007uvm

Crystal structure of human ClpP protease in complex with TR-27

7UVN | pdb_00007uvn

Crystal structure of human ClpP protease in complex with TR-57

7UVR | pdb_00007uvr

Crystal structure of human ClpP protease in complex with TR-65

7UVU | pdb_00007uvu

Crystal structure of human ClpP protease in complex with TR-107

7UW0 | pdb_00007uw0

Crystal structure of human ClpP protease in complex with TR-133

8SZM | pdb_00008szm

Crystal structure of E. coli ClpP protease in complex with phosphine oxide compound ACP6-12

8SZN | pdb_00008szn

Crystal structure of Neisseria meningitidis ClpP protease in complex with phosphine oxide compound ACP6-12

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

5DKP | pdb_00005dkp

6BBA | pdb_00006bba

6W9T | pdb_00006w9t

7UVM | pdb_00007uvm

7UVN | pdb_00007uvn

7UVR | pdb_00007uvr

7UVU | pdb_00007uvu

7UW0 | pdb_00007uw0

8SZM | pdb_00008szm

8SZN | pdb_00008szn