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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Yang, G."

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Search Summary

This query matches 209 Structures.

Refinements

Structure Determination Methodology

experimental (209)

Scientific Name of Source Organism

	Homo sapiens (97)
	Mus musculus (14)
	synthetic construct (14)
	Escherichia coli (12)
	Severe acute respiratory syndrome coronavirus 2 (10)
	Arabidopsis thaliana (7)
	Human immunodeficiency virus 1 (7)
	Xenopus tropicalis (7)
	Anopheles gambiae str. PEST (5)
	Plasmodium falciparum CAMP/Malaysia (5)

More...

Taxonomy

	Eukaryota (145)
	Bacteria (47)
	Riboviria (32)
	other sequences (14)
	Archaea (9)
	Duplodnaviria (2)

Experimental Method

	X-RAY DIFFRACTION (150)
	ELECTRON MICROSCOPY (58)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (209)
	RNA (3)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (61)
	2.0 - 2.5 (50)
	2.5 - 3.0 (47)
	3.0 - 3.5 (29)
	3.5 - 4.0 (10)
	4.0 - 4.5 (5)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (3)
	2005 - 2009 (11)
	2010 - 2014 (27)
	2015 - 2019 (65)
	2020 - 2024 (88)
	2025 - 2029 (14)

Enzyme Classification Name

	Hydrolases (63)
	Transferases (19)
	Ligases (13)
	Lyases (7)
	Oxidoreductases (4)
	Translocases (1)

Membrane Protein Annotation

	PDBTM (41)
	MemProtMD (31)
	OPM (23)
	mpstruc (16)

Symmetry Type

	Asymmetric (120)
	Cyclic (86)
	Dihedral (14)

SCOP Classification

	All beta proteins (15)
	Alpha and beta proteins (a/b) (17)
	Alpha and beta proteins (a+b) (20)
	All alpha proteins (13)
	Artifacts (12)
	Small proteins (1)
	Coiled coil proteins (1)

AllSelected

1 to 25 of 209 Structures

Page 1 of 9

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1B6I \| pdb_00001b6i	Download File View File

T4 LYSOZYME MUTANT WITH CYS 54 REPLACED BY THR, CYS 97 REPLACED BY ALA, THR 21 REPLACED BY CYS AND LYS 124 REPLACED BY CYS (C54T,C97A,T21C,K124C)

Vetter, I.R., Baase, W.A., Snow, S., Matthews, B.W.

(2000) Proc Natl Acad Sci U S A 97: 139-144

Released	2000-01-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Tequatrovirus T4
Macromolecule	PROTEIN (LYSOZYME) (protein)
Unique Ligands	HED

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1FT4 \| pdb_00001ft4	Download File View File

PHOTOCHEMICALLY-ENHANCED BINDING OF SMALL MOLECULES TO THE TUMOR NECROSIS FACTOR RECEPTOR-1

Muckelbauer, J.K., Chang, C.-H.

(2001) Proc Natl Acad Sci U S A 98: 11879-11884

Released	2001-10-12
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	SOLUBLE TUMOR NECROSIS FACTOR RECEPTOR 1 (protein)
Unique Ligands	703

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1JXZ \| pdb_00001jxz	Download File View File

Structure of the H90Q mutant of 4-Chlorobenzoyl-Coenzyme A Dehalogenase complexed with 4-hydroxybenzoyl-Coenzyme A (product)

Thoden, J.B., Zhang, W., Wei, Y., Luo, L., Taylor, K.L., Yang, G., Dunaway-Mariano, D., Benning, M.M., Holden, H.M.

(2001) Biochemistry 40: 13474-13482

Released	2001-10-03
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pseudomonas sp. CBS3
Macromolecule	4-chlorobenzoyl Coenzyme A dehalogenase (protein)
Unique Ligands	BCA, CA, PO4

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1NZY \| pdb_00001nzy	Download File View File

4-CHLOROBENZOYL COENZYME A DEHALOGENASE FROM PSEUDOMONAS SP. STRAIN CBS-3

Benning, M.M., Holden, H.M.

(1996) Biochemistry 35: 8103-8109

Released	1997-07-07
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Pseudomonas sp. CBS3
Macromolecule	4-CHLOROBENZOYL COENZYME A DEHALOGENASE (protein)
Unique Ligands	BCA, CA, EDO, PO4

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1YM2 \| pdb_00001ym2	Download File View File

Crystal structure of human beta secretase complexed with NVP-AUR200

Hanessian, S., Yun, H., Hou, Y., Yang, G., Bayrakdarian, M., Therrien, E., Moitessier, N., Roggo, S., Veenstra, S.

(2005) J Med Chem 48: 5175-5190

Released	2006-01-17
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein) NVP-AUR200 INHIBITOR (protein)

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1YM4 \| pdb_00001ym4	Download File View File

Crystal structure of human beta secretase complexed with NVP-AMK640

Hanessian, S., Yun, H., Hou, Y., Yang, G., Bayrakdarian, M., Therrien, E., Moitessier, N., Roggo, S., Veenstra, S.

(2005) J Med Chem 48: 5175-5190

Released	2006-01-17
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein) NVP-AMK640 INHIBITOR (protein)

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2ADU \| pdb_00002adu	Download File View File

Human Methionine Aminopeptidase Complex with 4-Aryl-1,2,3-triazole Inhibitor

Kallander, L.S., Lu, Q., Chen, W., Tomaszek, T., Yang, G., Tew, D., Meek, T.D., Hofmann, G.A., Schulz-Pritchard, C.K., Smith, W.W., Janson, C.A., Ryan, M.D., Zhang, G.F., Johanson, K.O., Kirkpatrick, R.B., Ho, T.F., Fisher, P.W., Mattern, M.R., Johnson, R.K., Hansbury, M.J., Winkler, J.D., Ward, K.W., Veber, D.F., Thompson, S.K.

(2005) J Med Chem 48: 5644-5647

Released	2005-09-13
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Methionine aminopeptidase 2 (protein)
Unique Ligands	CO, R20

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2F3E \| pdb_00002f3e	Download File View File

Crystal Structure of the Bace complex with AXQ093, a macrocyclic inhibitor

Rondeau, J.-M.

(2006) J Med Chem 49: 4544-4567

Released	2006-09-05
Method	X-RAY DIFFRACTION 2.11 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	AXQ

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2F3F \| pdb_00002f3f	Download File View File

Crystal Structure of the Bace complex with BDF488, a macrocyclic inhibitor

Rondeau, J.-M.

(2006) J Med Chem 49: 4544-4567

Released	2006-09-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	AXF

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2JWE \| pdb_00002jwe	Download File View File

Solution structure of the second PDZ domain from human zonula occludens-1: A dimeric form with 3D domain swapping

Ji, P., Wu, J.W., Zhang, J.H., Yang, Y.S., Wu, J.H., Shi, Y.Y.

(2011) Proteins 79: 1342-1346

Released	2007-10-30
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Tight junction protein ZO-1 (protein)

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2OAZ \| pdb_00002oaz	Download File View File

Human Methionine Aminopeptidase-2 Complexed with SB-587094

Marino Jr., J.P., Fisher, P.W., Hofmann, G.A., Kirkpatrick, R., Janson, C.A., Johnson, R.K., Ma, C., Mattern, M., Meek, T.D., Ryan, D., Schulz, C., Smith, W.W., Tew, D.G., Tomazek Jr., T.A., Veber, D.F., Xiong, W.C., Yamamoto, Y., Yamashita, K., Yang, G., Thompson, S.K.

(2007) J Med Chem 50: 3777-3785

Released	2007-06-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	human Methionine Amino Peptidase 2 (protein)
Unique Ligands	CO, I96

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2VAY \| pdb_00002vay	Download File View File

Calmodulin complexed with CaV1.1 IQ peptide

Halling, D.B., Black, D.J., Pedersen, S.E., Hamilton, S.L.

(2009) J Biological Chem 284: 20041

Released	2008-09-16
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Homo sapiens
Macromolecule	CALMODULIN (protein) VOLTAGE-DEPENDENT L-TYPE CALCIUM CHANNEL SUBUNIT ALPHA-1S (protein)
Unique Ligands	CA, CL

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3G43 \| pdb_00003g43	Download File View File

Crystal structure of the calmodulin-bound Cav1.2 C-terminal regulatory domain dimer

Fallon, J.L., Quiocho, F.A.

(2009) Proc Natl Acad Sci U S A 106: 5135-5140

Released	2009-03-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Calmodulin (protein) Voltage-dependent L-type calcium channel subunit alpha-1C (protein)
Unique Ligands	CA

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3G5K \| pdb_00003g5k	Download File View File

Structure and activity of human mitochondrial peptide deformylase, a novel cancer target

Escobar-Alvarez, S., Goldgur, Y., Yang, G., Ouerfelli, O., Li, Y., Scheinberg, D.A.

(2009) J Mol Biology 387: 1211-1228

Released	2009-04-07
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Peptide deformylase, mitochondrial (protein)
Unique Ligands	BB2, CO

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3G5P \| pdb_00003g5p	Download File View File

Structure and activity of human mitochondrial peptide deformylase, a novel cancer target

Escobar-Alvarez, S., Goldgur, Y., Yang, G., Ouerfelli, O., Li, Y., Scheinberg, D.A.

(2009) J Mol Biology 387: 1211-1228

Released	2009-04-07
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Peptide deformylase, mitochondrial (protein)
Unique Ligands	CO, PO4

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3L47 \| pdb_00003l47	Download File View File

Crystal Structure of the Anopheles gambiae Odorant-binding Protein 22a

Ren, H., Zhang, S.

To be published

Released	2011-01-12
Method	X-RAY DIFFRACTION 2.506 Å
Organisms	Anopheles gambiae str. PEST
Macromolecule	Odorant binding protein (AGAP010409-PA) (protein)
Unique Ligands	AU

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3L4A \| pdb_00003l4a	Download File View File

Crystal Structure of an Anopheles gambiae Odorant-binding Protein 22a

Ren, H., Zhang, S.

To be published

Released	2011-01-12
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Anopheles gambiae str. PEST
Macromolecule	Odorant binding protein (AGAP010409-PA) (protein)
Unique Ligands	GOL, NH4

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3L4L \| pdb_00003l4l	Download File View File

Crystal Structure of an Anopheles gambiae Odorant-binding Protein AgamOBP22a with Bound Odorant Benzaldehyde

Ren, H., Zhang, S.

To be published

Released	2011-01-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Anopheles gambiae str. PEST
Macromolecule	Odorant binding protein (AGAP010409-PA) (protein)
Unique Ligands	HBX, NH4

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3NKS \| pdb_00003nks	Download File View File

Structure of human protoporphyrinogen IX oxidase

Shen, Y.

(2011) FASEB J 25: 653-664

Released	2011-04-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Protoporphyrinogen oxidase (protein)
Unique Ligands	ACJ, FAD, GOL

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3PJI \| pdb_00003pji	Download File View File

Crystal structure of AgamOBP22a at 1.7 angstrom in the open status for ligand binding.

Zhang, S., Ren, H.

To be published

Released	2012-01-11
Method	X-RAY DIFFRACTION 1.704 Å
Organisms	Anopheles gambiae str. PEST
Macromolecule	Odorant binding protein (AGAP010409-PA) (protein)
Unique Ligands	NH4

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3QME \| pdb_00003qme	Download File View File

Crystal Structure of an Anopheles gambiae Odorant-binding Protein AgamOBP22a with Bound Odorant Cyclohexanone

Ren, H., Zhang, S.

To be published

Released	2011-02-23
Method	X-RAY DIFFRACTION 2.002 Å
Organisms	Anopheles gambiae str. PEST
Macromolecule	Odorant binding protein (AGAP010409-PA) (protein)
Unique Ligands	CYH, NH4

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4JAM \| pdb_00004jam	Download File View File

Crystal structure of broadly neutralizing anti-hiv-1 antibody ch103

Zhou, T., Moquin, S., Zheng, A., Srivatsan, S., Kwong, P.D.

(2013) Nature 496: 469-476

Released	2013-04-03
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	ANTIGEN BINDING FRAGMENT OF HEAVY CHAIN of CH103 (protein) ANTIGEN BINDING FRAGMENT OF LIGHT CHAIN of CH103 (protein)
Unique Ligands	EDO, GOL, SO4

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4JAN \| pdb_00004jan	Download File View File

crystal structure of broadly neutralizing antibody CH103 in complex with HIV-1 gp120

Zhou, T., Moquin, S., Zheng, A., Srivatsan, S., Kwong, P.D.

(2013) Nature 496: 469-476

Released	2013-04-03
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	ANTIGEN BINDING FRAGMENT OF HEAVY CHAIN of CH103 (protein) ANTIGEN BINDING FRAGMENT OF LIGHT CHAIN of CH103 (protein) ENVELOPE GLYCOPROTEIN GP120 of HIV-1 clade C (protein)
Unique Ligands	GOL, NA, NAG