RCSB PDB: Search

1NEK \| pdb_00001nek	Download File View File

Complex II (Succinate Dehydrogenase) From E. Coli with ubiquinone bound

Yankovskaya, V., Horsefield, R., Tornroth, S., Luna-Chavez, C., Miyoshi, H., Leger, C., Byrne, B., Cecchini, G., Iwata, S.

(2003) Science 299: 700-704

Released	2003-02-25
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli
Macromolecule	Succinate dehydrogenase cytochrome b-556 subunit (protein) Succinate dehydrogenase flavoprotein subunit (protein) Succinate dehydrogenase hydrophobic membrane anchor protein (protein) Succinate dehydrogenase iron-sulfur protein (protein)
Unique Ligands	CA, CDN, EPH, F3S, FAD, FES, HEM, OAA, SF4, UQ2

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1NEN \| pdb_00001nen	Download File View File

Complex II (Succinate Dehydrogenase) From E. Coli with Dinitrophenol-17 inhibitor co-crystallized at the ubiquinone binding site

Yankovskaya, V., Horsefield, R., Tornroth, S., Luna-Chavez, C., Miyoshi, H., Leger, C., Byrne, B., Cecchini, G., Iwata, S.

(2003) Science 299: 700-704

Released	2003-02-25
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia coli
Macromolecule	Succinate dehydrogenase cytochrome b-556 subunit (protein) Succinate dehydrogenase flavoprotein subunit (protein) Succinate dehydrogenase hydrophobic membrane anchor protein (protein) Succinate dehydrogenase iron-sulfur protein (protein)
Unique Ligands	CA, CDN, DNT, EPH, F3S, FAD, FES, HEM, OAA, SF4

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2ACZ \| pdb_00002acz	Download File View File

Complex II (Succinate Dehydrogenase) From E. Coli with Atpenin A5 inhibitor co-crystallized at the ubiquinone binding site

Horsefield, R., Yankovskaya, V., Sexton, G., Whittingham, W., Shiomi, K., Omura, S., Byrne, B., Cecchini, G., Iwata, S.

(2006) J Biological Chem 281: 7309-7316

Released	2006-01-03
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Escherichia coli
Macromolecule	Succinate dehydrogenase cytochrome b556 subunit (protein) Succinate dehydrogenase flavoprotein subunit (protein) Succinate dehydrogenase hydrophobic membrane anchor protein (protein) Succinate dehydrogenase iron-sulfur protein (protein)
Unique Ligands	AT5, CDN, F3S, FAD, FES, HEB, OAA, SF4

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2WDQ \| pdb_00002wdq	Download File View File

E. coli succinate:quinone oxidoreductase (SQR) with carboxin bound

Ruprecht, J., Yankovskaya, V., Maklashina, E., Iwata, S., Cecchini, G.

(2009) J Biological Chem 284: 29836-29846

Released	2009-08-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	SUCCINATE DEHYDROGENASE CYTOCHROME B556 SUBUNIT (protein) SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNIT (protein) SUCCINATE DEHYDROGENASE HYDROPHOBIC MEMBRANE ANCHOR SUBUNIT (protein) SUCCINATE DEHYDROGENASE IRON-SULFUR SUBUNIT (protein)
Unique Ligands	CBE, F3S, FAD, FES, HEM, NA, SF4, SO4, TEO

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2WDR \| pdb_00002wdr	Download File View File

E. coli succinate:quinone oxidoreductase (SQR) with pentachlorophenol bound

Ruprecht, J., Yankovskaya, V., Maklashina, E., Iwata, S., Cecchini, G.

(2009) J Biological Chem 284: 29836

Released	2009-08-25
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Escherichia coli
Macromolecule	SUCCINATE DEHYDROGENASE CYTOCHROME B556 SUBUNIT (protein) SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNIT (protein) SUCCINATE DEHYDROGENASE HYDROPHOBIC MEMBRANE ANCHOR SUBUNIT (protein) SUCCINATE DEHYDROGENASE IRON-SULFUR SUBUNIT (protein)
Unique Ligands	F3S, FAD, FES, HEM, NA, PCI, SF4, TEO

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2WDV \| pdb_00002wdv	Download File View File

E. coli succinate:quinone oxidoreductase (SQR) with an empty quinone- binding pocket

Ruprecht, J., Yankovskaya, V., Maklashina, E., Iwata, S., Cecchini, G.

(2009) J Biological Chem 284: 29836

Released	2009-08-25
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Escherichia coli
Macromolecule	SUCCINATE DEHYDROGENASE CYTOCHROME B556 SUBUNIT (protein) SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNIT (protein) SUCCINATE DEHYDROGENASE HYDROPHOBIC MEMBRANE ANCHOR PROTEIN (protein) SUCCINATE DEHYDROGENASE IRON-SULFUR SUBUNIT (protein)
Unique Ligands	F3S, FAD, FES, HEM, NA, SF4, TEO

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2WS3 \| pdb_00002ws3	Download File View File

Crystal structure of the E. coli succinate:quinone oxidoreductase (SQR) SdhD Tyr83Phe mutant

Ruprecht, J., Yankovskaya, V., Maklashina, E., Iwata, S., Cecchini, G.

To be published

Released	2010-08-25
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Escherichia coli
Macromolecule	SUCCINATE DEHYDROGENASE CYTOCHROME B-556 SUBUNIT (protein) SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNIT (protein) SUCCINATE DEHYDROGENASE HYDROPHOBIC MEMBRANE ANCHOR SUBUNIT (protein) SUCCINATE DEHYDROGENASE IRON-SULFUR SUBUNIT (protein)
Unique Ligands	CBE, F3S, FAD, FES, HEM, NA, SF4, TEO

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2WU2 \| pdb_00002wu2	Download File View File

Crystal structure of the E. coli succinate:quinone oxidoreductase (SQR) SdhC His84Met mutant

Ruprecht, J., Yankovskaya, V., Maklashina, E., Iwata, S., Cecchini, G.

To be published

Released	2010-08-25
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	SUCCINATE DEHYDROGENASE CYTOCHROME B556 SUBUNIT (protein) SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNIT (protein) SUCCINATE DEHYDROGENASE HYDROPHOBIC MEMBRANE ANCHOR PROTEIN SUBUNIT (protein) SUCCINATE DEHYDROGENASE IRON-SULFUR SUBUNIT (protein)
Unique Ligands	CBE, F3S, FAD, FES, HEM, NA, SF4, TEO

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2WU5 \| pdb_00002wu5	Download File View File

Crystal structure of the E. coli succinate:quinone oxidoreductase (SQR) SdhD His71Met mutant

Ruprecht, J., Yankovskaya, V., Maklashina, E., Iwata, S., Cecchini, G.

To be published

Released	2010-08-25
Method	X-RAY DIFFRACTION 2.803 Å
Organisms	Escherichia coli
Macromolecule	SUCCINATE DEHYDROGENASE CYTOCHROME B556 SUBUNIT (protein) SUCCINATE DEHYDROGENASE FLAVOPROTEIN SUBUNIT (protein) SUCCINATE DEHYDROGENASE HYDROPHOBIC MEMBRANE ANCHOR PROTEIN SUBUNIT (protein) SUCCINATE DEHYDROGENASE IRON-SULFUR SUBUNIT (protein)
Unique Ligands	CBE, F3S, FAD, FES, HEM, NA, SF4, TEO

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3P4P \| pdb_00003p4p	Download File View File

Crystal structure of Menaquinol:fumarate oxidoreductase in complex with fumarate

Tomasiak, T.M., Archuleta, T.L., Andr ll, J., Luna-Ch vez, C., Davis, T.A., Sarwar, M., Ham, A.J., McDonald, W.H., Yankowskaya, V., Stern, H.A., Johnston, J.N., Maklashina, E., Cecchini, G., Iverson, T.M.

(2011) J Biological Chem 286: 3047-3056

Released	2010-12-01
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli 042 Escherichia coli 536 Escherichia coli DH1
Macromolecule	Fumarate reductase flavoprotein subunit (protein) Fumarate reductase iron-sulfur protein (protein) Fumarate reductase subunit C (protein) Fumarate reductase subunit D (protein)
Unique Ligands	F3S, FAD, FES, FUM, SF4

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3P4Q \| pdb_00003p4q	Download File View File

Crystal structure of Menaquinol:oxidoreductase in complex with oxaloacetate

Tomasiak, T.M., Archuleta, T.L., Andrell, J., Luna-Chavez, C., Davis, T.A., Sarwar, M., Ham, A.J., McDonald, W.H., Yankowskaya, V., Stern, H.A., Johnston, J.N., Maklashina, E., Cecchini, G., Iverson, T.M.

(2011) J Biological Chem 286: 3047-3056

Released	2010-12-08
Method	X-RAY DIFFRACTION 3.35 Å
Organisms	Escherichia coli 042 Escherichia coli 536 Escherichia coli DH1
Macromolecule	Fumarate reductase flavoprotein subunit (protein) Fumarate reductase iron-sulfur protein (protein) Fumarate reductase subunit C (protein) Fumarate reductase subunit D (protein)
Unique Ligands	F3S, FAD, FES, OAA, SF4

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3P4R \| pdb_00003p4r	Download File View File

Crystal structure of Menaquinol:fumarate oxidoreductase in complex with glutarate

Tomasiak, T.M., Archuleta, T.L., Andrell, J., Luna-Chavez, C., Davis, T.A., Sarwar, M., Ham, A.J., McDonald, W.H., Yankowskaya, V., Stern, H.A., Johnston, J.N., Maklashina, E., Cecchini, G., Iverson, T.M.

(2011) J Biological Chem 286: 3047-3056

Released	2010-11-24
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Escherichia coli 042 Escherichia coli O55:H7 str. CB9615
Macromolecule	Fumarate reductase flavoprotein subunit (protein) Fumarate reductase iron-sulfur subunit (protein) Fumarate reductase subunit C (protein) Fumarate reductase subunit D (protein)
Unique Ligands	F3S, FAD, FES, GUA, SF4

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3P4S \| pdb_00003p4s	Download File View File

Crystal structure of Menaquinol:fumarate oxidoreductase in complex with a 3-nitropropionate adduct

Tomasiak, T.M., Archuleta, T.L., Andrell, J., Luna-Chavez, C., Davis, T.A., Sarwar, M., Ham, A.J., McDonald, W.H., Yankowskaya, V., Stern, H.A., Johnston, J.N., Maklashina, E., Cecchini, G., Iverson, T.M.

(2011) J Biological Chem 286: 3047-3056

Released	2010-12-08
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Escherichia coli 042 Escherichia coli O55:H7 str. CB9615
Macromolecule	Fumarate reductase flavoprotein subunit (protein) Fumarate reductase iron-sulfur subunit (protein) Fumarate reductase subunit C (protein) Fumarate reductase subunit D (protein)
Unique Ligands	3NP, F3S, FAD, FES, SF4

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3QC5 \| pdb_00003qc5	Download File View File

GspB

Pyburn, T.M., Iverson, T.M.

(2011) PLoS Pathog 7: e1002112-e1002112

Released	2011-08-10
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Streptococcus gordonii
Macromolecule	Platelet binding protein GspB (protein)
Unique Ligands	GOL, HDZ, K, NA

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3QC6 \| pdb_00003qc6	Download File View File

GspB

Pyburn, T.M.

(2011) PLoS Pathog 7: e1002112-e1002112

Released	2011-08-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Streptococcus gordonii
Macromolecule	Platelet binding protein GspB (protein)
Unique Ligands	CA, GOL, HDZ

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5IUC \| pdb_00005iuc	Download File View File

Crystal structure of the GspB siglec domain with sialyl T antigen bound

Loukachevitch, L.V., Fialkowski, K.P., Wawrzak, Z., Iverson, T.M.

(2011) PLoS Pathog 7: e1002112

Released	2016-04-13
Method	X-RAY DIFFRACTION 1.253 Å
Organisms	Streptococcus gordonii
Macromolecule	Platelet binding protein GspB (protein)
Unique Ligands	MG
Unique branched monosaccharides	A2G, GAL, SIA

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6AWF \| pdb_00006awf	Download File View File

Escherichia coli quinol:fumarate reductase crystallized without dicarboxylate

Iverson, T.M.

(2018) J Struct Biol 202: 100-104

Released	2017-12-06
Method	X-RAY DIFFRACTION 3.35 Å
Organisms	Escherichia coli
Macromolecule	Fumarate reductase flavoprotein subunit (protein) Fumarate reductase iron-sulfur subunit (protein) Fumarate reductase subunit C (protein) Fumarate reductase subunit D (protein)
Unique Ligands	F3S, FAD, FES, PO4, SF4

1NEK | pdb_00001nek

Complex II (Succinate Dehydrogenase) From E. Coli with ubiquinone bound

1NEN | pdb_00001nen

Complex II (Succinate Dehydrogenase) From E. Coli with Dinitrophenol-17 inhibitor co-crystallized at the ubiquinone binding site

2ACZ | pdb_00002acz

Complex II (Succinate Dehydrogenase) From E. Coli with Atpenin A5 inhibitor co-crystallized at the ubiquinone binding site

2WDQ | pdb_00002wdq

E. coli succinate:quinone oxidoreductase (SQR) with carboxin bound

2WDR | pdb_00002wdr

E. coli succinate:quinone oxidoreductase (SQR) with pentachlorophenol bound

2WDV | pdb_00002wdv

E. coli succinate:quinone oxidoreductase (SQR) with an empty quinone- binding pocket

2WS3 | pdb_00002ws3

Crystal structure of the E. coli succinate:quinone oxidoreductase (SQR) SdhD Tyr83Phe mutant

2WU2 | pdb_00002wu2

Crystal structure of the E. coli succinate:quinone oxidoreductase (SQR) SdhC His84Met mutant

2WU5 | pdb_00002wu5

Crystal structure of the E. coli succinate:quinone oxidoreductase (SQR) SdhD His71Met mutant

3P4P | pdb_00003p4p

Crystal structure of Menaquinol:fumarate oxidoreductase in complex with fumarate

3P4Q | pdb_00003p4q

Crystal structure of Menaquinol:oxidoreductase in complex with oxaloacetate

3P4R | pdb_00003p4r

Crystal structure of Menaquinol:fumarate oxidoreductase in complex with glutarate

3P4S | pdb_00003p4s

Crystal structure of Menaquinol:fumarate oxidoreductase in complex with a 3-nitropropionate adduct

3QC5 | pdb_00003qc5

GspB

3QC6 | pdb_00003qc6

GspB

5IUC | pdb_00005iuc

Crystal structure of the GspB siglec domain with sialyl T antigen bound

6AWF | pdb_00006awf

Escherichia coli quinol:fumarate reductase crystallized without dicarboxylate

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1NEK | pdb_00001nek

1NEN | pdb_00001nen

2ACZ | pdb_00002acz

2WDQ | pdb_00002wdq

2WDR | pdb_00002wdr

2WDV | pdb_00002wdv

2WS3 | pdb_00002ws3

2WU2 | pdb_00002wu2

2WU5 | pdb_00002wu5

3P4P | pdb_00003p4p

3P4Q | pdb_00003p4q

3P4R | pdb_00003p4r

3P4S | pdb_00003p4s

3QC5 | pdb_00003qc5

3QC6 | pdb_00003qc6

5IUC | pdb_00005iuc

6AWF | pdb_00006awf