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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = 7MT

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Search Summary

This query matches 20 Structures.

Refinements

Structure Determination Methodology

experimental (20)

Scientific Name of Source Organism

	Gallus gallus (5)
	Methanothermococcus thermolithotrophicus (3)
	Pyrococcus horikoshii (2)
	Tequintavirus T5 (2)
	Cyanobacterium aponinum (1)
	Escherichia coli (1)
	Homo sapiens (1)
	Ignicoccus islandicus DSM 13165 (1)
	Paracoccus denitrificans PD1222 (1)
	Pseudomonas aeruginosa UCBPP-PA14 (1)

More...

Taxonomy

	Archaea (7)
	Eukaryota (6)
	Bacteria (5)
	Duplodnaviria (2)

Experimental Method

	X-RAY DIFFRACTION (20)
	SOLUTION SCATTERING (1)

Polymer Entity Type

Protein (20)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (7)
	2.0 - 2.5 (7)
	2.5 - 3.0 (2)
	3.0 - 3.5 (1)

Release Date

	2015 - 2019 (13)
	2020 - 2024 (7)

Enzyme Classification Name

	Hydrolases (8)
	Oxidoreductases (3)
	Transferases (1)

Membrane Protein Annotation

	MemProtMD (1)
	PDBTM (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (10)
	Dihedral (7)
	Cyclic (3)

SCOP Classification

	Alpha and beta proteins (a/b) (7)
	Alpha and beta proteins (a+b) (7)
	All beta proteins (1)

AllSelected

1 to 20 of 20 Structures

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5MF2 \| pdb_00005mf2	Download File View File

Bacteriophage T5 distal tail protein pb9 co-crystallized with Tb-Xo4

Engilberge, S., Riobe, F., Di Pietro, S., Lassalle, L., Arnaud, C.-A., Breyton, C., Madern, D., Coquelle, N., Maury, O., Girard, E.

(2017) Chem Sci 8: 5909-5917

Released	2017-09-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Tequintavirus T5
Macromolecule	Distal tail protein (protein)
Unique Ligands	7MT, CL, TB

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6F2F \| pdb_00006f2f	Download File View File

Crystal structure of Protease 1 from Pyrococcus Horikoshii co-cystallized in presence of 10 mM Tb-Xo4 and ammonium sulfate.

Engilberge, S., Riobe, F., Di Pietro, S., Franzetti, B., Girard, E., Dumont, E., Maury, O.

(2018) Chemistry 24: 9739-9746

Released	2018-10-03
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Pyrococcus horikoshii
Macromolecule	Deglycase PH1704 (protein)
Unique Ligands	2HA, 7MT, SO4, TB

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6F2H \| pdb_00006f2h	Download File View File

Structure of Protease 1 from Pyrococcus horikoshii co-crystallized in presence of 10 mM Tb-Xo4 and potassium iodide.

Engilberge, S., Riobe, F., Di Pietro, S., Franzetti, B., Girard, E., Dumont, E., Maury, O.

(2018) Chemistry 24: 9739-9746

Released	2018-10-03
Method	X-RAY DIFFRACTION 2.19 Å
Organisms	Pyrococcus horikoshii
Macromolecule	Deglycase PH1704 (protein)
Unique Ligands	7MT, IOD, TB

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6F2I \| pdb_00006f2i	Download File View File

Crystal structure of Hen Egg-White Lysozyme co-crystallized in presence of 100 mM Tb-Xo4

Engilberge, S., Riobe, F., DI Pietro, S., Girard, E., Dumont, E., Maury, O.

(2018) Chemistry 24: 9739-9746

Released	2018-10-03
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	7MT, ACT, CL, NA, TB

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6F2J \| pdb_00006f2j	Download File View File

Crystal structure of Hen Egg-White Lysozyme co-crystallized in presence of 100 mM Tb-Xo4 and 100 mM sodium sulfate

Engilberge, S., Riobe, F., Di Pietro, S., Girard, E., Dumont, E., Maury, O.

(2018) Chemistry 24: 9739-9746

Released	2018-10-03
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	7MT, CL, NA, TB

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6F2M \| pdb_00006f2m	Download File View File

Structure of the bacteriophage T5 distal tail protein pb9 co-crystallized with 10mM Tb-Xo4

Engilberge, S., Riobe, F., Di Pietro, S., Breyton, C., Girard, E., Dumont, E., Maury, O.

(2018) Chemistry 24: 9739-9746

Released	2018-10-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Tequintavirus T5
Macromolecule	Distal tail protein (protein)
Unique Ligands	7MT, CL, EDO, NA, TB

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6FRM \| pdb_00006frm	Download File View File

Crystal Structure of coenzyme F420H2 oxidase (FprA) co-crystallized with 10 mM Tb-Xo4

Engilberge, S., Riobe, F., Wagner, T., Di Pietro, S., Shima, S., Girard, E., Dumont, E., Maury, O.

(2018) Chemistry 24: 9739-9746

Released	2018-10-31
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Methanothermococcus thermolithotrophicus
Macromolecule	Coenzyme F420H2 oxidase (FprA) (protein)
Unique Ligands	7MT, CL, FE, FMN, TB

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6FRN \| pdb_00006frn	Download File View File

Structure of F420H2 oxidase (FprA) co-crystallized with 10mM Tb-Xo4 and calcium chloride

Engilberge, S., Riobe, F., Di Pietro, S., Wagner, T., Shima, S., Girard, E., Dumont, E., Maury, O.

(2018) Chemistry 24: 9739-9746

Released	2018-10-03
Method	X-RAY DIFFRACTION 1.74 Å
Organisms	Methanothermococcus thermolithotrophicus
Macromolecule	F420H2 oxidase (FprA) (protein)
Unique Ligands	7MT, CA, FMN, GOL, NA, PE4, TB

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6FRO \| pdb_00006fro	Download File View File

Crystal structure of Hen Egg-White Lysozyme co-crystallized in presence of 100 mM Tb-Xo4 and 100 mM potassium iodide.

Engilberge, S., Riobe, F., Di Pietro, S., Girard, E., Dumont, E., Maury, O.

(2018) Chemistry 24: 9739-9746

Released	2018-10-03
Method	X-RAY DIFFRACTION 1.42 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	7MT, IOD, NA, TB

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6HF6 \| pdb_00006hf6	Download File View File

Crystal structure of the Protease 1 (E29A,E60A,E80A) from Pyrococcus horikoshii co-crystallized with Tb-Xo4.

Engilberge, S., Wagner, T., Santoni, G., Breyton, C., Shima, S., Franzetti, B., Riobe, F., Maury, O., Girard, E.

(2019) J Appl Crystallogr 52: 722-731

Released	2019-06-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	Deglycase PH1704 (protein)
Unique Ligands	7MT, MLI, TB

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6HF7 \| pdb_00006hf7	Download File View File

Crystal structure of the adenylate kinase from Methanothermococcus thermolithotrophicus co-crystallized with Tb-Xo4

Engilberge, S., Wagner, T., Santoni, G., Breyton, C., Shima, S., Franzetti, B., Riobe, F., Maury, O., Girard, E.

(2019) J Appl Crystallogr 52: 722-731

Released	2019-06-19
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Methanothermococcus thermolithotrophicus
Macromolecule	Adenylate kinase (protein)
Unique Ligands	7MT, GOL, MG, TB

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6QSS \| pdb_00006qss	Download File View File

Crystal Structure of Ignicoccus islandicus malate dehydrogenase co-crystallized with 10 mM Tb-Xo4

Roche, J., Girard, E., Madern, D.

(2019) J Struct Biol 208: 7-17

Released	2019-07-17
Method	X-RAY DIFFRACTION 1.892 Å SOLUTION SCATTERING
Organisms	Ignicoccus islandicus DSM 13165
Macromolecule	Malate dehydrogenase (protein)
Unique Ligands	7MT, CL, TB

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6RQA \| pdb_00006rqa	Download File View File

Crystal structure of the iminosuccinate reductase of Paracoccus denitrificans in complex with NAD+

Zarzycki, J., Severi, F., Schada von Borzyskowski, L., Erb, T.J.

(2019) Nature 575: 500-504

Released	2019-08-14
Method	X-RAY DIFFRACTION 2.56 Å
Organisms	Paracoccus denitrificans PD1222
Macromolecule	iminosuccinate reductase (protein)
Unique Ligands	7MT, NAD, TB

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6TVY \| pdb_00006tvy	Download File View File

Structure of hen egg white lysozyme crystallized in the presence of Tb-Xo4 crystallophore in the XtalController device

de Wijn, R., Rollet, K., Coudray, L., McEwen, A.G., Lorber, B., Sauter, C.

(2020) Crystals (Basel)

Released	2020-12-16
Method	X-RAY DIFFRACTION 1.51 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	7MT, CL, NA, TB

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6YXG \| pdb_00006yxg	Download File View File

Cryogenic human adiponectin receptor 2 (ADIPOR2) with Tb-XO4 ligand determined by Serial Crystallography (SSX) using CrystalDirect

Healey, R.D., Basu, S., Humm, A.S., Leyrat, C., Dupeux, F., Pica, A., Granier, S., Marquez, J.A.

(2021) Cell Rep Methods 1: None-None

Released	2021-05-12
Method	X-RAY DIFFRACTION 3.01 Å
Organisms	Homo sapiens
Macromolecule	Adiponectin receptor protein 2 (protein) V REGION HEAVY AND LIGHT CHAINS (protein)
Unique Ligands	7MT, OLA, OLB, ZN

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7VCN \| pdb_00007vcn	Download File View File

Crystal Structure of PitA fragment from pilus islet-2 of Streptococcus oralis with Tb-Xo4

Yadav, R.K., Krishnan, V.

(2022) FEBS J 289: 6342-6366

Released	2022-07-13
Method	X-RAY DIFFRACTION 2.343 Å
Organisms	Streptococcus oralis ATCC 35037
Macromolecule	von Willebrand factor type A domain protein (protein)
Unique Ligands	7MT, TB

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8AB2 \| pdb_00008ab2	Download File View File

Crystal Structure of the Lactate Dehydrogenase of Cyanobacterium Aponinum in its apo form.

Robin, A.Y., Girard, E., Madern, D.

(2023) Mol Biol Evol 40:

Released	2022-08-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Cyanobacterium aponinum
Macromolecule	L-lactate dehydrogenase (protein)
Unique Ligands	7MT, EDO, TB

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8BPQ \| pdb_00008bpq	Download File View File

crystal structure of N-ethylmaleimide reductase with mutation Y187F (nemA Y187F) from Escherichia coli

Pfister, P., Tinzl, M., Erb, T.

To be published

Released	2024-06-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	N-ethylmaleimide reductase (protein)
Unique Ligands	7MT, FMN

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8OWC \| pdb_00008owc	Download File View File

Crystal structure of Hen Egg White Lysozyme co-crystallized with 10 mM TbXo4

Alsalman, Z., Girard, E.

(2024) Chemistry 30: e202400900-e202400900

Released	2024-07-17
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	7MT, CL, NA, TB

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8Q8O \| pdb_00008q8o	Download File View File

PA14_16140 protein: the regulator of an operon involved in the biofilm formation in PA14 P. aeruginosa

Broutin, I., Phan, G., Girard, E.

(2024) Front Microbiol 15: 1332448-1332448

Released	2024-02-28
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Pseudomonas aeruginosa UCBPP-PA14
Macromolecule	DUF2170 family protein (protein)
Unique Ligands	7MT, GOL

1 to 20 of 20 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

5MF2 | pdb_00005mf2

Bacteriophage T5 distal tail protein pb9 co-crystallized with Tb-Xo4

6F2F | pdb_00006f2f

Crystal structure of Protease 1 from Pyrococcus Horikoshii co-cystallized in presence of 10 mM Tb-Xo4 and ammonium sulfate.

6F2H | pdb_00006f2h

Structure of Protease 1 from Pyrococcus horikoshii co-crystallized in presence of 10 mM Tb-Xo4 and potassium iodide.

6F2I | pdb_00006f2i

Crystal structure of Hen Egg-White Lysozyme co-crystallized in presence of 100 mM Tb-Xo4

6F2J | pdb_00006f2j

Crystal structure of Hen Egg-White Lysozyme co-crystallized in presence of 100 mM Tb-Xo4 and 100 mM sodium sulfate

6F2M | pdb_00006f2m

Structure of the bacteriophage T5 distal tail protein pb9 co-crystallized with 10mM Tb-Xo4

6FRM | pdb_00006frm

Crystal Structure of coenzyme F420H2 oxidase (FprA) co-crystallized with 10 mM Tb-Xo4

6FRN | pdb_00006frn

Structure of F420H2 oxidase (FprA) co-crystallized with 10mM Tb-Xo4 and calcium chloride

6FRO | pdb_00006fro

Crystal structure of Hen Egg-White Lysozyme co-crystallized in presence of 100 mM Tb-Xo4 and 100 mM potassium iodide.

6HF6 | pdb_00006hf6

Crystal structure of the Protease 1 (E29A,E60A,E80A) from Pyrococcus horikoshii co-crystallized with Tb-Xo4.

6HF7 | pdb_00006hf7

Crystal structure of the adenylate kinase from Methanothermococcus thermolithotrophicus co-crystallized with Tb-Xo4

6QSS | pdb_00006qss

Crystal Structure of Ignicoccus islandicus malate dehydrogenase co-crystallized with 10 mM Tb-Xo4

6RQA | pdb_00006rqa

Crystal structure of the iminosuccinate reductase of Paracoccus denitrificans in complex with NAD+

6TVY | pdb_00006tvy

Structure of hen egg white lysozyme crystallized in the presence of Tb-Xo4 crystallophore in the XtalController device

6YXG | pdb_00006yxg

Cryogenic human adiponectin receptor 2 (ADIPOR2) with Tb-XO4 ligand determined by Serial Crystallography (SSX) using CrystalDirect

7VCN | pdb_00007vcn

Crystal Structure of PitA fragment from pilus islet-2 of Streptococcus oralis with Tb-Xo4

8AB2 | pdb_00008ab2

Crystal Structure of the Lactate Dehydrogenase of Cyanobacterium Aponinum in its apo form.

8BPQ | pdb_00008bpq

crystal structure of N-ethylmaleimide reductase with mutation Y187F (nemA Y187F) from Escherichia coli

8OWC | pdb_00008owc

Crystal structure of Hen Egg White Lysozyme co-crystallized with 10 mM TbXo4

8Q8O | pdb_00008q8o

PA14_16140 protein: the regulator of an operon involved in the biofilm formation in PA14 P. aeruginosa

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

5MF2 | pdb_00005mf2

6F2F | pdb_00006f2f

6F2H | pdb_00006f2h

6F2I | pdb_00006f2i

6F2J | pdb_00006f2j

6F2M | pdb_00006f2m

6FRM | pdb_00006frm

6FRN | pdb_00006frn

6FRO | pdb_00006fro

6HF6 | pdb_00006hf6

6HF7 | pdb_00006hf7

6QSS | pdb_00006qss

6RQA | pdb_00006rqa

6TVY | pdb_00006tvy

6YXG | pdb_00006yxg

7VCN | pdb_00007vcn

8AB2 | pdb_00008ab2

8BPQ | pdb_00008bpq

8OWC | pdb_00008owc

8Q8O | pdb_00008q8o