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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = NUT

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Search Summary

This query matches 10 Structures.

Refinements

Structure Determination Methodology

experimental (10)

Scientific Name of Source Organism

	Homo sapiens (9)
	Xenopus laevis (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (10)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (10)

Polymer Entity Type

Protein (10)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (7)

Release Date

	2010 - 2014 (2)
	2015 - 2019 (3)
	2020 - 2024 (5)

Enzyme Classification Name

	Transferases (5)
	Ligases (3)

Symmetry Type

	Asymmetric (10)
	Cyclic (1)

SCOP Classification

	All alpha proteins (8)
	Artifacts (3)

AllSelected

1 to 10 of 10 Structures

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Explore in 3D

4HG7 \| pdb_00004hg7	Download File View File

Crystal Structure of an MDM2/Nutlin-3a complex

Noble, M.E.M., Anil, B., Riedinger, C., Endicott, J.A.

(2013) Acta Crystallogr D Biol Crystallogr 69: 1358-1366

Released	2013-07-31
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase Mdm2 (protein)
Unique Ligands	NUT, SO4

Explore in 3D

4J3E \| pdb_00004j3e	Download File View File

The 1.9A crystal structure of humanized Xenopus Mdm2 with nutlin-3a

Graves, B.J., Lukacs, C.M., Kammlott, R.U., Crowther, R.

(2013) ACS Med Chem Lett 4: 466-469

Released	2013-04-24
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Xenopus laevis
Macromolecule	E3 ubiquitin-protein ligase Mdm2 (protein)
Unique Ligands	NUT, SO4

Explore in 3D

5C5A \| pdb_00005c5a	Download File View File

Crystal Structure of HDM2 in complex with Nutlin-3a

Orts, J., Waelti, M.A., Marsh, M., Vera, L., Gossert, A.D., Guentert, P., Riek, R.

To be published

Released	2016-06-29
Method	X-RAY DIFFRACTION 1.146 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase Mdm2 (protein)
Unique Ligands	CL, IOD, NUT, SO4

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5Z02 \| pdb_00005z02	Download File View File

Crystal structure of HIS6-tagged Mdm2 with nutlin-3a

Su, Z.D., Cheng, X.Y., Chen, R., Pi, N.

To be published

Released	2018-01-03
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase Mdm2 (protein)
Unique Ligands	NUT

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5ZXF \| pdb_00005zxf	Download File View File

The 1.25A Crystal structure of His6-tagged Mdm2 in complex with nutlin-3a

Cheng, X.Y., Su, Z.D., Pi, N., Cao, C.Z., Zhao, Z.T., Zhou, J.J., Chen, R., Kuang, Z.K., Huang, Y.Q.

To be published

Released	2018-08-22
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase Mdm2 (protein)
Unique Ligands	NUT

Explore in 3D

7C3Q \| pdb_00007c3q	Download File View File

Human MdmX protein in complex with Nutlin3a

Su, Z.D., Cheng, X.Y., Zhang, B.L., Kuang, Z.K., Yang, J., Li, Z.C., Yu, J.P., Zhao, Z.T., Cao, C.Z.

To be published

Released	2020-06-10
Method	X-RAY DIFFRACTION 1.801 Å
Organisms	Homo sapiens
Macromolecule	Protein Mdm4 (protein)
Unique Ligands	NUT, O4B, PEG

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7C3Y \| pdb_00007c3y	Download File View File

Crystal structure of the N-terminal domain of human MdmX protein in complex with Nutlin3a

Su, Z.D., Cheng, X.Y., Zhang, B.L., Kuang, Z.K., Yang, J., Li, Z.C., Yu, J.P., Zhao, Z.T., Cao, C.Z.

To be published

Released	2020-06-17
Method	X-RAY DIFFRACTION 1.632 Å
Organisms	Homo sapiens
Macromolecule	Protein Mdm4 (protein)
Unique Ligands	NUT, O4B

Explore in 3D

7C44 \| pdb_00007c44	Download File View File

Crystal structure of the p53-binding domain of human MdmX protein in complex with Nutlin3a

Cheng, X.Y., Zhang, B.L., Kuang, Z.K., Yang, J., Li, Z.C., Yu, J.P., Zhao, Z.T., Cao, C.Z., Su, Z.D.

To be published

Released	2020-06-17
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	Protein Mdm4 (protein)
Unique Ligands	NUT, O4B

Explore in 3D

8HDG \| pdb_00008hdg	Download File View File

Small peptide enhances the binding of nutline-3a to MdmX

Cheng, X.Y., Huang, Y., Wei, Q.Y., Huang, J.J., Peng, Y.W., Su, Z.D.

To be published

Released	2022-11-30
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Homo sapiens
Macromolecule	Uncharacterized protein DKFZp686B01123 (protein)
Unique Ligands	NUT, O4B

Explore in 3D

8IA5 \| pdb_00008ia5	Download File View File

Small peptide enhances the binding of nutline-3a to N-terminal domain of MdmX

Cheng, X.Y., Wei, Q.Y., Huang, Y., Su, Z.D.

To be published

Released	2023-02-22
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	9-mer peptide (protein) Protein Mdm4 (protein)
Unique Ligands	NUT, O4B

1 to 10 of 10 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

4HG7 | pdb_00004hg7

Crystal Structure of an MDM2/Nutlin-3a complex

4J3E | pdb_00004j3e

The 1.9A crystal structure of humanized Xenopus Mdm2 with nutlin-3a

5C5A | pdb_00005c5a

Crystal Structure of HDM2 in complex with Nutlin-3a

5Z02 | pdb_00005z02

Crystal structure of HIS6-tagged Mdm2 with nutlin-3a

5ZXF | pdb_00005zxf

The 1.25A Crystal structure of His6-tagged Mdm2 in complex with nutlin-3a

7C3Q | pdb_00007c3q

Human MdmX protein in complex with Nutlin3a

7C3Y | pdb_00007c3y

Crystal structure of the N-terminal domain of human MdmX protein in complex with Nutlin3a

7C44 | pdb_00007c44

Crystal structure of the p53-binding domain of human MdmX protein in complex with Nutlin3a

8HDG | pdb_00008hdg

Small peptide enhances the binding of nutline-3a to MdmX

8IA5 | pdb_00008ia5

Small peptide enhances the binding of nutline-3a to N-terminal domain of MdmX

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

4HG7 | pdb_00004hg7

4J3E | pdb_00004j3e

5C5A | pdb_00005c5a

5Z02 | pdb_00005z02

5ZXF | pdb_00005zxf

7C3Q | pdb_00007c3q

7C3Y | pdb_00007c3y

7C44 | pdb_00007c44

8HDG | pdb_00008hdg

8IA5 | pdb_00008ia5