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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = R1P

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Search Summary

This query matches 10 Structures.

Refinements

Structure Determination Methodology

experimental (10)

Scientific Name of Source Organism

	Escherichia coli (2)
	Phytophthora capsici LT1534 (2)
	Schistosoma mansoni (2)
	Bos taurus (1)
	Pseudomonas aeruginosa (1)
	Streptococcus pyogenes serotype M6 (1)
	Trypanosoma brucei (1)

Taxonomy

	Eukaryota (6)
	Bacteria (4)

Experimental Method

X-RAY DIFFRACTION (10)

Polymer Entity Type

Protein (10)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (2)
	2.0 - 2.5 (5)
	2.5 - 3.0 (1)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (1)
	2005 - 2009 (4)
	2010 - 2014 (1)
	2015 - 2019 (3)

Enzyme Classification Name

	Transferases (9)
	Isomerases (1)

Symmetry Type

	Cyclic (6)
	Dihedral (3)
	Asymmetric (1)

SCOP Classification

	Alpha and beta proteins (a/b) (7)
	Alpha and beta proteins (a+b) (1)

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1 to 10 of 10 Structures

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1A9T \| pdb_00001a9t	Download File View File

BOVINE PURINE NUCLEOSIDE PHOSPHORYLASE COMPLEXED WITH 9-DEAZAINOSINE AND PHOSPHATE

Mao, C., Cook, W.J., Zhou, M., Fedorov, A.A., Almo, S.C., Ealick, S.E.

(1998) Biochemistry 37: 7135-7146

Released	1998-06-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bos taurus
Macromolecule	PURINE NUCLEOSIDE PHOSPHORYLASE (protein)
Unique Ligands	HPA, R1P

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1RXC \| pdb_00001rxc	Download File View File

E. COLI uridine phosphorylase: 5-fluorouracil ribose-1-phosphate complex

Caradoc-Davies, T.T., Cutfield, S.M., Lamont, I.L., Cutfield, J.F.

(2004) J Mol Biology 337: 337-354

Released	2004-04-13
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Escherichia coli
Macromolecule	Uridine phosphorylase (protein)
Unique Ligands	5UD, K, PO4, R1P, URF

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1TGY \| pdb_00001tgy	Download File View File

Structure of E. coli Uridine Phosphorylase complexed with uracil and ribose 1-phosphate

Bu, W., Settembre, E.C., Sanders, J.M., Begley, T.P., Ealick, S.E.

(2004) To be published

Released	2005-06-14
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	uridine phosphorylase (protein)
Unique Ligands	K, R1P, URA

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2H4L \| pdb_00002h4l	Download File View File

Complex of PMM/PGM with ribose 1-phosphate

Beamer, L.J.

(2006) Acta Crystallogr Sect F Struct Biol Cryst Commun 62: 722-726

Released	2006-08-08
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Phosphomannomutase/phosphoglucomutase (protein)
Unique Ligands	R1P, ZN

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3BJE \| pdb_00003bje	Download File View File

Crystal structure of Trypanosoma brucei nucleoside phosphorylase shows uridine phosphorylase activity

Larson, E.T., Merritt, E.A., Structural Genomics of Pathogenic Protozoa Consortium (SGPP)

(2010) J Mol Biology 396: 1244-1259

Released	2007-12-18
Method	X-RAY DIFFRACTION 1.44 Å
Organisms	Trypanosoma brucei
Macromolecule	Nucleoside phosphorylase, putative (protein)
Unique Ligands	CA, R1P, URA

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3FB1 \| pdb_00003fb1	Download File View File

Crystal Structure of Purine Nucleoside Phosphorylase in Complex with Ribose-1-Phosphate

Pereira, H.M., Garratt, R.C., Oliva, G.

(2011) J Synchrotron Radiat 18: 62-65

Released	2009-11-24
Method	X-RAY DIFFRACTION 2.002 Å
Organisms	Schistosoma mansoni
Macromolecule	Purine-nucleoside phosphorylase (protein)
Unique Ligands	ACT, R1P

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3QPB \| pdb_00003qpb	Download File View File

Crystal Structure of Streptococcus Pyogenes Uridine Phosphorylase Reveals a Subclass of the NP-I Superfamily

Tran, T.H., Christoffersen, S., Parker, W.B., Piskur, J., Serra, I., Terreni, M., Ealick, S.E.

(2011) Biochemistry 50: 6549-6558

Released	2011-08-24
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Streptococcus pyogenes serotype M6
Macromolecule	Uridine phosphorylase (protein)
Unique Ligands	R1P, URA

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5KO6 \| pdb_00005ko6	Download File View File

Crystal Structure of Isoform 2 of Purine Nucleoside Phosphorylase from Schistosoma mansoni in complex with cytosine and ribose-1-phosphate

Torini, J.R., Romanello, L., Bird, L., Owens, R., Brandao-Neto, J., Pereira, H.M.

(2018) PLoS One 13: e0203532-e0203532

Released	2017-08-09
Method	X-RAY DIFFRACTION 1.42 Å
Organisms	Schistosoma mansoni
Macromolecule	Purine nucleoside phosphorylase (protein)
Unique Ligands	CYT, R1P

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6K5H \| pdb_00006k5h	Download File View File

Structural and catalytic analysis of two diverse uridine phosphorylases in the oomycete Phytophthora capsici.

Yang, C.C., Zhang, X.G.

(2020) Sci Rep 10: 9051-9051

Released	2019-06-12
Method	X-RAY DIFFRACTION 2.503 Å
Organisms	Phytophthora capsici LT1534
Macromolecule	Uridine phosphorylase (protein)
Unique Ligands	R1P, URA

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6K8P \| pdb_00006k8p	Download File View File

Structural and catalytic analysis of two diverse uridine phosphorylases in the oomycete Phytophthora capsici.

Yang, C.C., Zhang, X.G.

(2020) Sci Rep 10: 9051-9051

Released	2019-11-13
Method	X-RAY DIFFRACTION 1.965 Å
Organisms	Phytophthora capsici LT1534
Macromolecule	Uridine phosphorylase (protein)
Unique Ligands	PO4, R1P, TDR, THM

1 to 10 of 10 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1A9T | pdb_00001a9t

BOVINE PURINE NUCLEOSIDE PHOSPHORYLASE COMPLEXED WITH 9-DEAZAINOSINE AND PHOSPHATE

1RXC | pdb_00001rxc

E. COLI uridine phosphorylase: 5-fluorouracil ribose-1-phosphate complex

1TGY | pdb_00001tgy

Structure of E. coli Uridine Phosphorylase complexed with uracil and ribose 1-phosphate

2H4L | pdb_00002h4l

Complex of PMM/PGM with ribose 1-phosphate

3BJE | pdb_00003bje

Crystal structure of Trypanosoma brucei nucleoside phosphorylase shows uridine phosphorylase activity

3FB1 | pdb_00003fb1

Crystal Structure of Purine Nucleoside Phosphorylase in Complex with Ribose-1-Phosphate

3QPB | pdb_00003qpb

Crystal Structure of Streptococcus Pyogenes Uridine Phosphorylase Reveals a Subclass of the NP-I Superfamily

5KO6 | pdb_00005ko6

Crystal Structure of Isoform 2 of Purine Nucleoside Phosphorylase from Schistosoma mansoni in complex with cytosine and ribose-1-phosphate

6K5H | pdb_00006k5h

Structural and catalytic analysis of two diverse uridine phosphorylases in the oomycete Phytophthora capsici.

6K8P | pdb_00006k8p

Structural and catalytic analysis of two diverse uridine phosphorylases in the oomycete Phytophthora capsici.

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1A9T | pdb_00001a9t

1RXC | pdb_00001rxc

1TGY | pdb_00001tgy

2H4L | pdb_00002h4l

3BJE | pdb_00003bje

3FB1 | pdb_00003fb1

3QPB | pdb_00003qpb

5KO6 | pdb_00005ko6

6K5H | pdb_00006k5h

6K8P | pdb_00006k8p