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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Common Name (Entity Source Organism) = "Jellyfish"

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Search Summary

This query matches 344 Polymer Entities.

Refinements

Structure Determination Methodology

experimental (344)

Scientific Name of Source Organism

	Aequorea victoria (343)
	Homo sapiens (29)
	Rattus norvegicus (21)
	Gallus gallus (15)
	Entacmaea quadricolor (8)
	synthetic construct (7)
	Takifugu rubripes (5)
	Mus musculus (3)
	Eimeria acervulina (2)
	Escherichia coli (2)

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Taxonomy

	Eukaryota (344)
	Bacteria (9)
	other sequences (7)
	Duplodnaviria (2)

Experimental Method

	X-RAY DIFFRACTION (320)
	ELECTRON MICROSCOPY (24)

Polymer Entity Type

Protein (344)

Refinement Resolution (Å)

	0.5 - 1.0 (7)
	1.0 - 1.5 (79)
	1.5 - 2.0 (125)
	2.0 - 2.5 (67)
	2.5 - 3.0 (31)
	3.0 - 3.5 (23)
	3.5 - 4.0 (8)
	4.0 - 4.5 (1)
	> 4.5 (3)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (48)
	2010 - 2014 (81)
	2015 - 2019 (113)
	2020 - 2024 (101)

Enzyme Classification Name

	Transferases (19)
	Oxidoreductases (11)
	Hydrolases (2)

Membrane Protein Annotation

	PDBTM (27)
	OPM (26)
	mpstruc (23)
	MemProtMD (14)

Symmetry Type

	Asymmetric (308)
	Cyclic (38)
	Dihedral (2)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a+b) (210)
	Artifacts (108)
	All alpha proteins (3)

AllSelected

1 to 25 of 344 Polymer Entities

Page 1 of 14

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1H6R: Entity 1	Download File View File

The oxidized state of a redox sensitive variant of green fluorescent protein

Ostergaard, H., Henriksen, A., Hansen, F.G., Winther, J.R.

(2001) EMBO J 20: 5853

Released	2001-11-15
Method	X-RAY DIFFRACTION 1.5 Å
Chain IDs	A, B, C
Organism	Aequorea victoria
Macromolecule	GREEN FLUORESCENT PROTEIN

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2QLE: Entity 1	Download File View File

GFP/S205V mutant

Shu, X., Remington, S.J.

(2007) Protein Sci 16: 2703-2710

Released	2008-02-12
Method	X-RAY DIFFRACTION 1.59 Å
Chain IDs	A, B, C, D
Organism	Aequorea victoria
Macromolecule	Green fluorescent protein

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2QRF: Entity 1	Download File View File

Green Fluorescent Protein: Cyclized-only Intermediate of Chromophore Maturation in the Q183E variant

Wood, T.I., Barondeau, D.P., Hitomi, C., Tainer, J.A., Getzoff, E.D.

To be published

Released	2009-04-21
Method	X-RAY DIFFRACTION 1.5 Å
Chain ID	A
Organism	Aequorea victoria
Macromolecule	Green fluorescent protein

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2QT2: Entity 1	Download File View File

Cyclized-Dehydrated Intermediate of GFP Variant Q183E in Chromophore Maturation

Wood, T.I., Barondeau, D.P., Hitomi, C., Tainer, J.A., Getzoff, E.D.

To be published

Released	2009-04-21
Method	X-RAY DIFFRACTION 1.31 Å
Chain ID	A
Organism	Aequorea victoria
Macromolecule	Green fluorescent protein

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2QZ0: Entity 1	Download File View File

Mature Q183E variant of Green Fluorescent Protein Chromophore

Wood, T.I., Barondeau, D.P., Hitomi, C., Tainer, J.A., Getzoff, E.D.

To be published

Released	2009-04-21
Method	X-RAY DIFFRACTION 1.2 Å
Chain ID	A
Organism	Aequorea victoria
Macromolecule	Green fluorescent protein

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2WSN: Entity 1	Download File View File

Structure of Enhanced Cyan Fluorescent Protein at physiological pH

Lelimousin, M., Noirclerc-Savoye, M., Lazareno-Saez, C., Paetzold, B., Le Vot, S., Chazal, R., Macheboeuf, P., Field, M.J., Bourgeois, D., Royant, A.

(2009) Biochemistry 48: 10038

Released	2009-09-29
Method	X-RAY DIFFRACTION 1.37 Å
Chain ID	A
Organism	Aequorea victoria
Macromolecule	GREEN FLUORESCENT PROTEIN

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2WSO: Entity 1	Download File View File

Structure of Cerulean Fluorescent Protein at physiological pH

Lelimousin, M., Noirclerc-Savoye, M., Lazareno-Saez, C., Paetzold, B., Le Vot, S., Chazal, R., Macheboeuf, P., Field, M.J., Bourgeois, D., Royant, A.

(2009) Biochemistry 48: 10038

Released	2009-09-29
Method	X-RAY DIFFRACTION 1.15 Å
Chain ID	A
Organism	Aequorea victoria
Macromolecule	GREEN FLUORESCENT PROTEIN

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3AI4: Entity 1	Download File View File

Crystal structure of yeast enhanced green fluorescent protein - mouse polymerase iota ubiquitin binding motif fusion protein

Suzuki, N., Wakatsuki, S., Kawasaki, M.

(2010) Acta Crystallogr D Biol Crystallogr 66: 1059-1066

Released	2010-09-29
Method	X-RAY DIFFRACTION 1.6 Å
Chain ID	A
Organism	Aequorea victoria Mus musculus
Macromolecule	yeast enhanced green fluorescent protein,DNA polymerase iota

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3AI5: Entity 1	Download File View File

Crystal structure of yeast enhanced green fluorescent protein-ubiquitin fusion protein

Suzuki, N., Wakatsuki, S., Kawasaki, M.

(2010) Acta Crystallogr D Biol Crystallogr 66: 1059-1066

Released	2010-09-29
Method	X-RAY DIFFRACTION 1.4 Å
Chain ID	A
Organism	Aequorea victoria Mus musculus
Macromolecule	yeast enhanced green fluorescent protein,Ubiquitin

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3CB9: Entity 1	Download File View File

Development of a family of redox-sensitive green fluorescent protein indicators for use in relatively oxidizing subcellular environments

Lohman, J.R.

(2008) Biochemistry 47: 8678-8688

Released	2008-08-19
Method	X-RAY DIFFRACTION 1.31 Å
Chain ID	A
Organism	Aequorea victoria
Macromolecule	Green fluorescent protein

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3CBE: Entity 1	Download File View File

Development of a family of redox-sensitive green fluorescent protein indicators for use in relatively oxidizing subcellular environments

Lohman, J.R.

(2008) Biochemistry 47: 8678-8688

Released	2008-08-19
Method	X-RAY DIFFRACTION 1.488 Å
Chain ID	A
Organism	Aequorea victoria
Macromolecule	Green fluorescent protein

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3CD1: Entity 1	Download File View File

Development of a family of redox-sensitive green fluorescent protein indicators for use in relatively oxidizing subcellular environments

Lohman, J.R.

(2008) Biochemistry 47: 8678-8688

Released	2008-08-19
Method	X-RAY DIFFRACTION 1.312 Å
Chain ID	A
Organism	Aequorea victoria
Macromolecule	Green fluorescent protein

Explore in 3D

3CD9: Entity 1	Download File View File

Development of a family of redox-sensitive green fluorescent protein indicators for use in relatively oxidizing subcellular environments

Lohman, J.R.

(2008) Biochemistry 47: 8678-8688

Released	2008-08-19
Method	X-RAY DIFFRACTION 1.502 Å
Chain ID	A
Organism	Aequorea victoria
Macromolecule	Green fluorescent protein

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3DPW: Entity 1	Download File View File

Structure of the Yellow Fluorescent Protein Citrine Frozen at 1 Atmosphere Number 1: Structure 1 in a Series of 26 High Pressure Structures

Barstow, B., Kim, C.U.

(2008) Proc Natl Acad Sci U S A 105: 13362-13366

Released	2008-09-23
Method	X-RAY DIFFRACTION 1.59 Å
Chain ID	A
Organism	Aequorea victoria
Macromolecule	Green fluorescent protein

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3DPX: Entity 1	Download File View File

Structure of the Yellow Fluorescent Protein Citrine Frozen at 5000 Atmospheres: Structure 26 in a Series of 26 High Pressure Structures

Barstow, B., Kim, C.U.

(2008) Proc Natl Acad Sci U S A 105: 13362-13366

Released	2008-09-23
Method	X-RAY DIFFRACTION 1.5 Å
Chain ID	A
Organism	Aequorea victoria
Macromolecule	Green fluorescent protein

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3DPZ: Entity 1	Download File View File

Structure of the Yellow Fluorescent Protein Citrine Frozen at 4000 Atmospheres Number 3: Structure 25 in a Series of 26 High Pressure Structures

Barstow, B., Kim, C.U.

(2008) Proc Natl Acad Sci U S A 105: 13362-13366

Released	2008-09-23
Method	X-RAY DIFFRACTION 1.7 Å
Chain ID	A
Organism	Aequorea victoria
Macromolecule	Green fluorescent protein

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3DQ1: Entity 1	Download File View File

Structure of the Yellow Fluorescent Protein Citrine Frozen at 4000 Atmospheres Number 2: Structure 24 in a Series of 26 High Pressure Structures

Barstow, B., Kim, C.U.

(2008) Proc Natl Acad Sci U S A 105: 13362-13366

Released	2008-09-23
Method	X-RAY DIFFRACTION 1.7 Å
Chain ID	A
Organism	Aequorea victoria
Macromolecule	Green fluorescent protein

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3DQ2: Entity 1	Download File View File

Structure of the Yellow Fluorescent Protein Citrine Frozen at 4000 Atmospheres Number 1: Structure 23 in a Series of 26 High Pressure Structures

Barstow, B., Kim, C.U.

(2008) Proc Natl Acad Sci U S A 105: 13362-13366

Released	2008-09-23
Method	X-RAY DIFFRACTION 1.6 Å
Chain ID	A
Organism	Aequorea victoria
Macromolecule	Green fluorescent protein

Explore in 3D

3DQ3: Entity 1	Download File View File

Structure of the Yellow Fluorescent Protein Citrine Frozen at 2500 Atmospheres: Structure 22 in a Series of 26 High Pressure Structures

Barstow, B., Kim, C.U.

(2008) Proc Natl Acad Sci U S A 105: 13362-13366

Released	2008-09-23
Method	X-RAY DIFFRACTION 1.7 Å
Chain ID	A
Organism	Aequorea victoria
Macromolecule	Green fluorescent protein

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3DQ4: Entity 1	Download File View File

Structure of the Yellow Fluorescent Protein Citrine Frozen at 2000 Atmospheres Number 2: Structure 20 in a Series of 26 High Pressure Structures

Barstow, B., Kim, C.U.

(2008) Proc Natl Acad Sci U S A 105: 13362-13366

Released	2008-09-23
Method	X-RAY DIFFRACTION 1.47 Å
Chain ID	A
Organism	Aequorea victoria
Macromolecule	Green fluorescent protein

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3DQ5: Entity 1	Download File View File

Structure of the Yellow Fluorescent Protein Citrine Frozen at 1960 Atmospheres: Structure 19 in a Series of 26 High Pressure Structures

Barstow, B., Kim, C.U.

(2008) Proc Natl Acad Sci U S A 105: 13362-13366

Released	2008-09-23
Method	X-RAY DIFFRACTION 1.5 Å
Chain ID	A
Organism	Aequorea victoria
Macromolecule	Green fluorescent protein

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3DQ6: Entity 1	Download File View File

Structure of the Yellow Fluorescent Protein Citrine Frozen at 1920 Atmospheres Number 2: Structure 18 in a Series of 26 High Pressure Structures

Barstow, B., Kim, C.U.

(2008) Proc Natl Acad Sci U S A 105: 13362-13366

Released	2008-09-23
Method	X-RAY DIFFRACTION 1.6 Å
Chain ID	A
Organism	Aequorea victoria
Macromolecule	Green fluorescent protein

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3DQ7: Entity 1	Download File View File

Structure of the Yellow Fluorescent Protein Citrine Frozen at 1920 Atmospheres Number 1: Structure 17 in a Series of 26 High Pressure Structures

Barstow, B., Kim, C.U.

(2008) Proc Natl Acad Sci U S A 105: 13362-13366

Released	2008-09-23
Method	X-RAY DIFFRACTION 1.23 Å
Chain ID	A
Organism	Aequorea victoria
Macromolecule	Green fluorescent protein

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3DQ8: Entity 1	Download File View File

Structure of the Yellow Fluorescent Protein Citrine Frozen at 1500 Atmospheres Number 2: Structure 16 in a Series of 26 High Pressure Structures

Barstow, B., Kim, C.U.

(2008) Proc Natl Acad Sci U S A 105: 13362-13366

Released	2008-09-23
Method	X-RAY DIFFRACTION 1.51 Å
Chain ID	A
Organism	Aequorea victoria
Macromolecule	Green fluorescent protein

Explore in 3D

3DQ9: Entity 1	Download File View File

Structure of the Yellow Fluorescent Protein Citrine Frozen at 1500 Atmospheres Number 1: Structure 15 in a Series of 26 High Pressure Structures

Barstow, B., Kim, C.U.

(2008) Proc Natl Acad Sci U S A 105: 13362-13366

Released	2008-09-23
Method	X-RAY DIFFRACTION 1.4 Å
Chain ID	A
Organism	Aequorea victoria
Macromolecule	Green fluorescent protein

1 to 25 of 344 Polymer Entities

Page 1 of 14

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification