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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Scientific Name of the Source Organism = "Sphingomonas sp."

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Search Summary

This query matches 26 Polymer Entities.

Refinements

Structure Determination Methodology

experimental (26)

Scientific Name of Source Organism

Sphingomonas sp. (26)

Taxonomy

Bacteria (26)

Experimental Method

X-RAY DIFFRACTION (26)

Polymer Entity Type

Protein (26)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (8)
	2.0 - 2.5 (8)
	3.0 - 3.5 (6)
	> 4.5 (3)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (1)
	2005 - 2009 (2)
	2010 - 2014 (3)
	2015 - 2019 (13)
	2020 - 2024 (6)

Enzyme Classification Name

	Lyases (6)
	Hydrolases (3)

Membrane Protein Annotation

	MemProtMD (7)
	PDBTM (7)
	mpstruc (5)
	OPM (3)

Symmetry Type

	Asymmetric (21)
	Cyclic (5)

SCOP Classification

	All alpha proteins (5)
	Artifacts (4)
	Alpha and beta proteins (a/b) (3)
	All beta proteins (2)

AllSelected

1 to 25 of 26 Polymer Entities

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1HV6: Entity 1	Download File View File

CRYSTAL STRUCTURE OF ALGINATE LYASE A1-III COMPLEXED WITH TRISACCHARIDE PRODUCT.

Yoon, H.-J., Hashimoto, W., Miyake, O., Murata, K., Mikami, B.

(2001) J Mol Biology 307: 9-16

Released	2001-05-02
Method	X-RAY DIFFRACTION 2 Å
Chain ID	A
Organism	Sphingomonas sp.
Macromolecule	ALGINATE LYASE

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1QAZ: Entity 1	Download File View File

CRYSTAL STRUCTURE OF ALGINATE LYASE A1-III FROM SPHINGOMONAS SPECIES A1 AT 1.78A RESOLUTION

Yoon, H.-J.

(1999) J Mol Biology 290: 505-514

Released	1999-07-19
Method	X-RAY DIFFRACTION 1.78 Å
Chain ID	A
Organism	Sphingomonas sp.
Macromolecule	PROTEIN (ALGINATE LYASE A1-III)

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2Z42: Entity 1	Download File View File

Crystal Structure of Family 7 Alginate Lyase A1-II' from Sphingomonas sp. A1

Ogura, K., Yamasaki, M., Hashimoto, W., Mikami, B., Murata, K.

To be published

Released	2008-05-27
Method	X-RAY DIFFRACTION 1.6 Å
Chain ID	A
Organism	Sphingomonas sp.
Macromolecule	Alginate lyase

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2ZA9: Entity 1	Download File View File

Crystal Structure of Alginate lyase A1-II' N141C/N199C

Ogura, K., Yamasaki, M., Mikami, B., Hashimoto, W., Murata, K.

To be published

Released	2008-05-27
Method	X-RAY DIFFRACTION 2.1 Å
Chain ID	A
Organism	Sphingomonas sp.
Macromolecule	Alginate lyase

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4E1Y: Entity 1	Download File View File

Alginate lyase A1-III H192A apo form

Mikami, B., Ban, M., Suzuki, S., Yoon, H.-J., Miyake, O., Yamasaki, M., Ogura, K., Maruyama, Y., Hashimoto, W., Murata, K.

(2012) Acta Crystallogr D Biol Crystallogr 68: 1207-1216

Released	2012-04-11
Method	X-RAY DIFFRACTION 2.1 Å
Chain IDs	A, B
Organism	Sphingomonas sp.
Macromolecule	Alginate lyase

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4F10: Entity 1	Download File View File

Alginate lyase A1-III H192A complexed with tetrasaccharide

Mikami, B., Ban, M., Suzuki, S., Yoon, H.-J., Miyake, O., Yamasaki, M., Ogura, K., Maruyama, Y., Hashimoto, W., Murata, K.

(2012) Acta Crystallogr D Biol Crystallogr 68: 1207-1216

Released	2012-06-27
Method	X-RAY DIFFRACTION 2.2 Å
Chain IDs	A, B
Organism	Sphingomonas sp.
Macromolecule	Alginate lyase

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4F13: Entity 1	Download File View File

Alginate lyase A1-III Y246F complexed with tetrasaccharide

Mikami, B., Ban, M., Suzuki, S., Yoon, H.-J., Miyake, O., Yamasaki, M., Ogura, K., Maruyama, Y., Hashimoto, W., Murata, K.

(2012) Acta Crystallogr D Biol Crystallogr 68: 1207-1216

Released	2012-06-27
Method	X-RAY DIFFRACTION 2.208 Å
Chain IDs	A, B
Organism	Sphingomonas sp.
Macromolecule	Alginate lyase

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4TQU: Entity 1	Download File View File

Crystal structure of a bacterial ABC transporter involved in the import of the acidic polysaccharide alginate

Maruyama, Y., Itoh, T., Kaneko, A., Nishitani, Y., Mikami, B., Hashimoto, W., Murata, K.

(2015) Structure 23: 1643-1654

Released	2015-07-22
Method	X-RAY DIFFRACTION 3.204 Å
Chain ID	A [auth M]
Organism	Sphingomonas sp.
Macromolecule	AlgM1

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4TQU: Entity 2	Download File View File

Crystal structure of a bacterial ABC transporter involved in the import of the acidic polysaccharide alginate

Maruyama, Y., Itoh, T., Kaneko, A., Nishitani, Y., Mikami, B., Hashimoto, W., Murata, K.

(2015) Structure 23: 1643-1654

Released	2015-07-22
Method	X-RAY DIFFRACTION 3.204 Å
Chain ID	B [auth N]
Organism	Sphingomonas sp.
Macromolecule	AlgM2

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4TQU: Entity 3	Download File View File

Crystal structure of a bacterial ABC transporter involved in the import of the acidic polysaccharide alginate

Maruyama, Y., Itoh, T., Kaneko, A., Nishitani, Y., Mikami, B., Hashimoto, W., Murata, K.

(2015) Structure 23: 1643-1654

Released	2015-07-22
Method	X-RAY DIFFRACTION 3.204 Å
Chain IDs	C [auth S], E [auth T]
Organism	Sphingomonas sp.
Macromolecule	AlgS

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4TQU: Entity 4	Download File View File

Crystal structure of a bacterial ABC transporter involved in the import of the acidic polysaccharide alginate

Maruyama, Y., Itoh, T., Kaneko, A., Nishitani, Y., Mikami, B., Hashimoto, W., Murata, K.

(2015) Structure 23: 1643-1654

Released	2015-07-22
Method	X-RAY DIFFRACTION 3.204 Å
Chain ID	D [auth Q]
Organism	Sphingomonas sp.
Macromolecule	AlgQ2

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4TQV: Entity 1	Download File View File

Crystal structure of a bacterial ABC transporter involved in the import of the acidic polysaccharide alginate

Maruyama, Y., Itoh, T., Kaneko, A., Nishitani, Y., Mikami, B., Hashimoto, W., Murata, K.

(2015) Structure 23: 1643-1654

Released	2015-07-22
Method	X-RAY DIFFRACTION 4.504 Å
Chain IDs	A, E, I, M
Organism	Sphingomonas sp.
Macromolecule	AlgM1

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4TQV: Entity 2	Download File View File

Crystal structure of a bacterial ABC transporter involved in the import of the acidic polysaccharide alginate

Maruyama, Y., Itoh, T., Kaneko, A., Nishitani, Y., Mikami, B., Hashimoto, W., Murata, K.

(2015) Structure 23: 1643-1654

Released	2015-07-22
Method	X-RAY DIFFRACTION 4.504 Å
Chain IDs	B, F, J, N
Organism	Sphingomonas sp.
Macromolecule	AlgM2

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4TQV: Entity 3	Download File View File

Crystal structure of a bacterial ABC transporter involved in the import of the acidic polysaccharide alginate

Maruyama, Y., Itoh, T., Kaneko, A., Nishitani, Y., Mikami, B., Hashimoto, W., Murata, K.

(2015) Structure 23: 1643-1654

Released	2015-07-22
Method	X-RAY DIFFRACTION 4.504 Å
Chain IDs	C, D, G, H, K
Organism	Sphingomonas sp.
Macromolecule	AlgS

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4XIG: Entity 1	Download File View File

Crystal structure of bacterial alginate ABC transporter determined through humid air and glue-coating method

Kaneko, A., Maruyama, Y., Mizuno, N., Baba, S., Kumasaka, T., Mikami, B., Murata, K., Hashimoto, W.

(2017) J Biological Chem 292: 15681-15690

Released	2016-01-13
Method	X-RAY DIFFRACTION 3.402 Å
Chain ID	A [auth M]
Organism	Sphingomonas sp.
Macromolecule	AlgM1

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4XIG: Entity 2	Download File View File

Crystal structure of bacterial alginate ABC transporter determined through humid air and glue-coating method

Kaneko, A., Maruyama, Y., Mizuno, N., Baba, S., Kumasaka, T., Mikami, B., Murata, K., Hashimoto, W.

(2017) J Biological Chem 292: 15681-15690

Released	2016-01-13
Method	X-RAY DIFFRACTION 3.402 Å
Chain ID	B [auth N]
Organism	Sphingomonas sp.
Macromolecule	AlgM2

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5H6U: Entity 1	Download File View File

Structure of alginate-binding protein AlgQ2 in complex with an alginate pentasaccharide

Uenishi, K., Kaneko, A., Maruyama, Y., Mikami, B., Murata, K., Hashimoto, W.

(2017) J Biological Chem 292: 15681-15690

Released	2017-08-09
Method	X-RAY DIFFRACTION 2.006 Å
Chain IDs	A, B
Organism	Sphingomonas sp.
Macromolecule	AlgQ2

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5H71: Entity 1	Download File View File

Structure of alginate-binding protein AlgQ2 in complex with an alginate trisaccharide

Uenishi, K., Kaneko, A., Maruyama, Y., Mikami, B., Murata, K., Hashimoto, W.

(2017) J Biological Chem 292: 15681-15690

Released	2017-08-09
Method	X-RAY DIFFRACTION 1.549 Å
Chain IDs	A, B
Organism	Sphingomonas sp.
Macromolecule	AlgQ2

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5XWI: Entity 1	Download File View File

Crystal Structure of SPAP, an alkaline phosphatase from Sphingomonas showing covalent intermediate

Bihani, S.C.

To be published

Released	2018-07-04
Method	X-RAY DIFFRACTION 1.872 Å
Chain ID	A
Organism	Sphingomonas sp.
Macromolecule	Alkaline phosphatase PhoK

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5XWK: Entity 1	Download File View File

Crystal Structure of SPAP, an alkaline phosphatase from Sphingomonas in complex with inorganic phosphate

Bihani, S.C., Hosur, M.V.

To be published

Released	2018-07-18
Method	X-RAY DIFFRACTION 1.901 Å
Chain ID	A
Organism	Sphingomonas sp.
Macromolecule	Alkaline phosphatase PhoK

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6JHX: Entity 1	Download File View File

Crystal structure of alginate-binding protein AlgQ2 without calcium ion

Okumura, K., Maruyama, Y., Murata, K., Hashimoto, W.

To be published

Released	2020-02-19
Method	X-RAY DIFFRACTION 2.2 Å
Chain IDs	A, B
Organism	Sphingomonas sp.
Macromolecule	AlgQ2

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8I0J: Entity 1	Download File View File

JB13GH39P28 mutant-D41G

Zhou, J.P., Cao, L.J., Lin, M.Y., Zhang, R., Huang, Z.X.

To be published

Released	2024-04-24
Method	X-RAY DIFFRACTION 1.44 Å
Chain IDs	A, B
Organism	Sphingomonas sp.
Macromolecule	Glycoside hydrolase family 39 beta-xylosidase

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8I0X: Entity 1	Download File View File

Beta-Xylosidase JB13GH39P28 showing salt/ethanol/trypsin tolerance, low-pH/low-Temperature activity, and transformation of notoginsenosides

Zhou, J.P., Cao, L.J., Lin, M.Y., Zhang, R., Huang, Z.X.

To be published

Released	2024-04-24
Method	X-RAY DIFFRACTION 2 Å
Chain IDs	A [auth B], B [auth A]
Organism	Sphingomonas sp.
Macromolecule	Glycoside hydrolase family 39 beta-xylosidase