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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Scientific Name of the Source Organism = "Sphingomonas sp. A1"

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Search Summary

This query matches 45 Polymer Entities.

Refinements

Structure Determination Methodology

experimental (45)

Scientific Name of Source Organism

Sphingomonas sp. A1 (45)

Taxonomy

Bacteria (45)

Experimental Method

X-RAY DIFFRACTION (45)

Polymer Entity Type

Protein (45)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (22)
	2.0 - 2.5 (9)
	2.5 - 3.0 (2)
	3.0 - 3.5 (5)
	3.5 - 4.0 (4)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (9)
	2010 - 2014 (18)
	2015 - 2019 (8)
	2020 - 2024 (8)

Enzyme Classification Name

	Hydrolases (5)
	Lyases (4)
	Oxidoreductases (3)

Membrane Protein Annotation

	MemProtMD (4)
	PDBTM (4)

Symmetry Type

	Asymmetric (37)
	Dihedral (6)
	Cyclic (5)

SCOP Classification

	Alpha and beta proteins (a/b) (14)
	All beta proteins (4)
	Artifacts (2)

AllSelected

1 to 25 of 45 Polymer Entities

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1J1N: Entity 1	Download File View File

Structure Analysis of AlgQ2, A Macromolecule(Alginate)-Binding Periplasmic Protein Of Sphingomonas Sp. A1., Complexed with an Alginate Tetrasaccharide

Momma, K., Mikami, B., Mishima, Y., Hashimoto, W., Murata, K.

(2003) J Biological Chem 278: 6552-6559

Released	2003-06-10
Method	X-RAY DIFFRACTION 1.6 Å
Chain IDs	A, B
Organism	Sphingomonas sp. A1
Macromolecule	AlgQ2

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1KWH: Entity 1	Download File View File

Structure Analysis AlgQ2, a Macromolecule(alginate)-Binding Periplasmic Protein of Sphingomonas sp. A1.

Momma, K., Mikami, B., Mishima, Y., Hashimoto, W., Murata, K.

(2002) J Mol Biology 316: 1051-1059

Released	2002-02-13
Method	X-RAY DIFFRACTION 2 Å
Chain ID	A
Organism	Sphingomonas sp. A1
Macromolecule	Macromolecule-Binding Periplasmic Protein

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1Y3N: Entity 1	Download File View File

Structure of AlgQ1, alginate-binding protein, complexed with an alginate disaccharide

Momma, K., Mishima, Y., Hashimoto, W., Mikami, B., Murata, K.

(2005) Biochemistry 44: 5053-5064

Released	2005-04-12
Method	X-RAY DIFFRACTION 1.6 Å
Chain ID	A
Organism	Sphingomonas sp. A1
Macromolecule	AlgQ1

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1Y3P: Entity 1	Download File View File

Structure of AlgQ1, alginate-binding protein, complexed with an alginate tetrasaccharide

Momma, K., Mishima, Y., Hashimoto, W., Mikami, B., Murata, K.

(2005) Biochemistry 44: 5053-5064

Released	2005-04-12
Method	X-RAY DIFFRACTION 2 Å
Chain ID	A
Organism	Sphingomonas sp. A1
Macromolecule	AlgQ1

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1Y3Q: Entity 1	Download File View File

Structure of AlgQ1, alginate-binding protein

Momma, K., Mishima, Y., Hashimoto, W., Mikami, B., Murata, K.

(2005) Biochemistry 44: 5053-5064

Released	2005-04-12
Method	X-RAY DIFFRACTION 1.9 Å
Chain ID	A
Organism	Sphingomonas sp. A1
Macromolecule	AlgQ1

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2CWS: Entity 1	Download File View File

Crystal structure at 1.0 A of alginate lyase A1-II', a member of polysaccharide lyase family-7

Yamasaki, M., Ogura, K., Hashimoto, W., Mikami, B., Murata, K.

(2005) J Mol Biology 352: 11-21

Released	2005-11-15
Method	X-RAY DIFFRACTION 1 Å
Chain ID	A
Organism	Sphingomonas sp. A1
Macromolecule	alginate lyase A1-II'

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2ZAA: Entity 1	Download File View File

Crystal Structure of Family 7 Alginate Lyase A1-II' H191N/Y284F in Complex with Substrate (GGMG)

Ogura, K., Yamasaki, M., Mikami, B., Hashimoto, W., Murata, K.

To be published

Released	2008-05-27
Method	X-RAY DIFFRACTION 1.8 Å
Chain ID	A
Organism	Sphingomonas sp. A1
Macromolecule	Alginate lyase

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2ZAB: Entity 1	Download File View File

Crystal Structure of Family 7 Alginate Lyase A1-II' Y284F in Cmplex with Product (GGG)

Ogura, K., Yamasaki, M., Mikami, B., Hashimoto, W., Murata, K.

To be published

Released	2008-05-27
Method	X-RAY DIFFRACTION 1.66 Å
Chain ID	A
Organism	Sphingomonas sp. A1
Macromolecule	Alginate lyase

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2ZAC: Entity 1	Download File View File

Crystal Structure of Family 7 Alginate Lyase A1-II' Y284F in Complex with Product (MMG)

Ogura, K., Yamasaki, M., Mikami, B., Hashimoto, W., Murata, K.

To be published

Released	2008-05-27
Method	X-RAY DIFFRACTION 1.5 Å
Chain ID	A
Organism	Sphingomonas sp. A1
Macromolecule	Alginate lyase

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2ZBI: Entity 1	Download File View File

Crystal structure of a bacterial cell-surface flagellin

Maruyama, Y.

(2008) Biochemistry 47: 1393-1402

Released	2008-02-05
Method	X-RAY DIFFRACTION 2 Å
Chain IDs	A, B
Organism	Sphingomonas sp. A1
Macromolecule	Flagellin homolog

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2ZYC: Entity 1	Download File View File

Crystal structure of peptidoglycan hydrolase from Sphingomonas sp. A1

Ochiai, A., Mikami, B., Hashimoto, W., Murata, K.

(2009) Biochem Biophys Res Commun 381: 16-21

Released	2009-02-03
Method	X-RAY DIFFRACTION 1.74 Å
Chain ID	A
Organism	Sphingomonas sp. A1
Macromolecule	Peptidoglycan hydrolase FlgJ

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3A09: Entity 1	Download File View File

Crystal structure of Sphingomonas sp. A1 alginate-binding protein AlgQ1 in complex with unsaturated trimannuronate

Itoh, T., Mikami, B., Hashimoto, W., Murata, K.

To be published

Released	2010-03-16
Method	X-RAY DIFFRACTION 1.4 Å
Chain ID	A
Organism	Sphingomonas sp. A1
Macromolecule	AlgQ1

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3AFM: Entity 1	Download File View File

Crystal structure of aldose reductase A1-R responsible for alginate metabolism

Takase, R., Ochiai, A., Mikami, B., Hashimoto, W., Murata, K.

(2010) Biochim Biophys Acta 1804: 1925-1936

Released	2010-08-11
Method	X-RAY DIFFRACTION 1.65 Å
Chain IDs	A, B
Organism	Sphingomonas sp. A1
Macromolecule	Carbonyl reductase

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3AFN: Entity 1	Download File View File

Crystal structure of aldose reductase A1-R complexed with NADP

Takase, R., Ochiai, A., Mikami, B., Hashimoto, W., Murata, K.

(2010) Biochim Biophys Acta 1804: 1925-1936

Released	2010-08-11
Method	X-RAY DIFFRACTION 1.63 Å
Chain IDs	A [auth B], B [auth A], C, D
Organism	Sphingomonas sp. A1
Macromolecule	Carbonyl reductase

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3AMI: Entity 1	Download File View File

The crystal structure of the M16B metallopeptidase subunit from Sphingomonas sp. A1

Maruyama, Y., Chuma, A., Mikami, B., Hashimoto, W., Murata, K.

(2011) J Mol Biology 407: 180-192

Released	2011-02-02
Method	X-RAY DIFFRACTION 2.4 Å
Chain IDs	A, B
Organism	Sphingomonas sp. A1
Macromolecule	zinc peptidase

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3AMJ: Entity 1	Download File View File

The crystal structure of the heterodimer of M16B peptidase from Sphingomonas sp. A1

Maruyama, Y., Chuma, A., Mikami, B., Hashimoto, W., Murata, K.

(2011) J Mol Biology 407: 180-192

Released	2011-02-09
Method	X-RAY DIFFRACTION 3 Å
Chain IDs	A [auth B], C [auth D]
Organism	Sphingomonas sp. A1
Macromolecule	zinc peptidase inactive subunit

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3AMJ: Entity 2	Download File View File

The crystal structure of the heterodimer of M16B peptidase from Sphingomonas sp. A1

Maruyama, Y., Chuma, A., Mikami, B., Hashimoto, W., Murata, K.

(2011) J Mol Biology 407: 180-192

Released	2011-02-09
Method	X-RAY DIFFRACTION 3 Å
Chain IDs	B [auth C], D [auth A]
Organism	Sphingomonas sp. A1
Macromolecule	zinc peptidase active subunit

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3AT7: Entity 1	Download File View File

Crystal structure of bacterial cell-surface alginate-binding protein Algp7

Maruyama, Y., Ochiai, A., Mikami, B., Hashimoto, W., Murata, K.

(2011) Biochem Biophys Res Commun 405: 411-416

Released	2011-02-23
Method	X-RAY DIFFRACTION 2.1 Å
Chain IDs	A, B
Organism	Sphingomonas sp. A1
Macromolecule	Alginate-binding flagellin

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3K3T: Entity 1	Download File View File

E185A mutant of peptidoglycan hydrolase from Sphingomonas sp. A1

Maruyama, Y., Ochiai, A., Itoh, T., Mikami, B., Hashimoto, W., Murata, K.

(2010) J Basic Microbiol 50: 311-317

Released	2010-07-14
Method	X-RAY DIFFRACTION 1.75 Å
Chain ID	A
Organism	Sphingomonas sp. A1
Macromolecule	Peptidoglycan hydrolase FlgJ

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3K8V: Entity 1	Download File View File

Crysatl structure of a bacterial cell-surface flagellin N20C20

Maruyama, Y., Momma, M., Hashimoto, W., Murata, K.

To be published

Released	2010-10-06
Method	X-RAY DIFFRACTION 2.1 Å
Chain IDs	A, B
Organism	Sphingomonas sp. A1
Macromolecule	Flagellin homolog

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3K8W: Entity 1	Download File View File

Crysatl structure of a bacterial cell-surface flagellin N20C45

Maruyama, Y., Momma, M., Hashimoto, W., Murata, K.

To be published

Released	2010-10-06
Method	X-RAY DIFFRACTION 1.7 Å
Chain ID	A
Organism	Sphingomonas sp. A1
Macromolecule	Flagellin homolog

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3VLU: Entity 1	Download File View File

Crystal structure of Sphingomonas sp. A1 alginate-binding protein AlgQ1 in complex with saturated trimannuronate

Nishitani, Y., Maruyama, Y., Itoh, T., Mikami, B., Hashimoto, W., Murata, K.

(2012) Biochemistry 51: 3622-3633

Released	2012-01-25
Method	X-RAY DIFFRACTION 1.55 Å
Chain ID	A
Organism	Sphingomonas sp. A1
Macromolecule	AlgQ1

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3VLV: Entity 1	Download File View File

Crystal structure of Sphingomonas sp. A1 alginate-binding ptotein AlgQ1 in complex with unsaturated triguluronate

Nishitani, Y., Maruyama, Y., Itoh, T., Mikami, B., Hashimoto, W., Murata, K.

(2012) Biochemistry 51: 3622-3633

Released	2012-01-25
Method	X-RAY DIFFRACTION 1.5 Å
Chain ID	A
Organism	Sphingomonas sp. A1
Macromolecule	AlgQ1

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3VLW: Entity 1	Download File View File

Crystal structure of Sphingomonas sp. A1 alginate-binding protein AlgQ1 in complex with mannuronate-guluronate disaccharide

Nishitani, Y., Maruyama, Y., Itoh, T., Mikami, B., Hashimoto, W., Murata, K.

(2012) Biochemistry 51: 3622-3633

Released	2012-01-25
Method	X-RAY DIFFRACTION 2 Å
Chain IDs	A, B
Organism	Sphingomonas sp. A1
Macromolecule	AlgQ1

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3VWO: Entity 1	Download File View File

Crystal structure of peptidoglycan hydrolase mutant from Sphingomonas sp. A1

Maruyama, Y., Mikami, B., Hashimoto, W., Murata, K.

To be published

Released	2013-09-04
Method	X-RAY DIFFRACTION 1.802 Å
Chain ID	A
Organism	Sphingomonas sp. A1
Macromolecule	Peptidoglycan hydrolase FlgJ

1 to 25 of 45 Polymer Entities

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification