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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "CBX4"

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Search Summary

This query matches 536 Structures.

Refinements

Structure Determination Methodology

experimental (536)

Scientific Name of Source Organism

	Homo sapiens (98)
	Escherichia coli K-12 (27)
	synthetic construct (23)
	Escherichia coli (15)
	Bacillus subtilis (14)
	Pseudomonas aeruginosa PAO1 (11)
	Mycobacterium tuberculosis H37Rv (9)
	Staphylococcus epidermidis RP62A (9)
	Thermotoga maritima (9)
	Rhodococcus jostii RHA1 (8)

More...

Taxonomy

	Bacteria (383)
	Eukaryota (119)
	other sequences (23)
	Archaea (18)
	Duplodnaviria (15)
	Eukaryota (eukaryotes) (4)
	unclassified sequences (4)

Experimental Method

	X-RAY DIFFRACTION (478)
	SOLUTION NMR (58)
	SOLUTION SCATTERING (1)

Polymer Entity Type

	Protein (536)
	DNA (50)
	RNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (16)
	1.5 - 2.0 (137)
	2.0 - 2.5 (178)
	2.5 - 3.0 (107)
	3.0 - 3.5 (30)
	3.5 - 4.0 (7)
	4.0 - 4.5 (1)
	> 4.5 (2)

Release Date

	1995 - 1999 (3)
	2000 - 2004 (5)
	2005 - 2009 (215)
	2010 - 2014 (236)
	2015 - 2019 (77)

Enzyme Classification Name

	Transferases (28)
	Hydrolases (11)
	Oxidoreductases (6)
	Lyases (1)
	Isomerases (1)
	Ligases (1)

Symmetry Type

	Cyclic (362)
	Asymmetric (194)
	Dihedral (28)

SCOP Classification

	All alpha proteins (150)
	Alpha and beta proteins (a/b) (65)
	Artifacts (57)
	Alpha and beta proteins (a+b) (30)
	All beta proteins (22)
	Small proteins (4)
	Coiled coil proteins (1)

AllSelected

1 to 25 of 536 Structures

Page 1 of 22

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1AUZ \| pdb_00001auz	Download File View File

SOLUTION STRUCTURE OF SPOIIAA, A PHOSPHORYLATABLE COMPONENT OF THE SYSTEM THAT REGULATES TRANSCRIPTION FACTOR SIGMA-F OF BACILLUS SUBTILIS, NMR, 24 STRUCTURES

Kovacs, H., Comfort, D., Lord, M., Campbell, I.D., Yudkin, M.D.

(1998) Proc Natl Acad Sci U S A 95: 5067-5071

Released	1998-07-01
Method	SOLUTION NMR
Organisms	Bacillus subtilis
Macromolecule	SPOIIAA (protein)

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1B0N \| pdb_00001b0n	Download File View File

SINR PROTEIN/SINI PROTEIN COMPLEX

Lewis, R.J., Brannigan, J.A., Offen, W.A., Smith, I., Wilkinson, A.J.

(1998) J Mol Biology 283: 907-912

Released	1999-01-13
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacillus subtilis
Macromolecule	PROTEIN (SINI PROTEIN) (protein) PROTEIN (SINR PROTEIN) (protein)
Unique Ligands	ZN

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1BUZ \| pdb_00001buz	Download File View File

SOLUTION STRUCTURE OF SPOIIAA, A PHOSPHORYLATABLE COMPONENT OF THE SYSTEM THAT REGULATES TRANSCRIPTION FACTOR SIGMA-F OF BACILLUS SUBTILIS NMR, MINIMIZED AVERAGE STRUCTURE

Kovacs, H., Comfort, D., Lord, M., Campbell, I.D., Yudkin, M.D.

(1998) Proc Natl Acad Sci U S A 95: 5067-5071

Released	1998-07-01
Method	SOLUTION NMR
Organisms	Bacillus subtilis
Macromolecule	SPOIIAA (protein)

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1H9R \| pdb_00001h9r	Download File View File

Tungstate bound complex Dimop domain of ModE from E.coli

Gourley, D.G., Hunter, W.N.

(2001) J Biological Chem 276: 20641

Released	2001-06-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	MOLYBDENUM TRANSPORT PROTEIN MODE (protein)
Unique Ligands	NI, WO4

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1H9S \| pdb_00001h9s	Download File View File

Molybdate bound complex of Dimop domain of ModE from E.coli

Gourley, D.G., Hunter, W.N.

(2001) J Biological Chem 276: 20641

Released	2001-06-19
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Escherichia coli
Macromolecule	MOLYBDENUM TRANSPORT PROTEIN MODE (protein)
Unique Ligands	MOO

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1L5Y \| pdb_00001l5y	Download File View File

CRYSTAL STRUCTURE OF MG2+ / BEF3-BOUND RECEIVER DOMAIN OF SINORHIZOBIUM MELILOTI DCTD

Park, S., Meyer, M., Jones, A.D., Yennawar, H.P., Yennawar, N.H., Nixon, B.T.

(2002) FASEB J 16: 1964-1966

Released	2002-10-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Sinorhizobium meliloti
Macromolecule	C4-DICARBOXYLATE TRANSPORT TRANSCRIPTIONAL REGULATORY PROTEIN DCTD (protein)
Unique Ligands	BEF, BF2, BF4, GOL, MG, SO4

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1L5Z \| pdb_00001l5z	Download File View File

CRYSTAL STRUCTURE OF THE E121K SUBSTITUTION OF THE RECEIVER DOMAIN OF SINORHIZOBIUM MELILOTI DCTD

Park, S., Meyer, M., Jones, A.D., Yennawar, H.P., Yennawar, N.H., Nixon, B.T.

(2002) FASEB J 16: 1964-1966

Released	2002-10-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Sinorhizobium meliloti
Macromolecule	C4-DICARBOXYLATE TRANSPORT TRANSCRIPTIONAL REGULATORY PROTEIN DCTD (protein)
Unique Ligands	GOL, SO4

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1Y7Y \| pdb_00001y7y	Download File View File

High-resolution crystal structure of the restriction-modification controller protein C.AhdI from Aeromonas hydrophila

McGeehan, J.E., Streeter, S.D., Papapanagiotou, I., Fox, G.C., Kneale, G.G.

(2005) J Mol Biology 346: 689-701

Released	2005-02-22
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Aeromonas hydrophila
Macromolecule	C.AhdI (protein)

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1Y9Q \| pdb_00001y9q	Download File View File

Crystal Structure of HTH_3 family Transcriptional Regulator from Vibrio cholerae

Kumaran, D., Swaminathan, S., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2005-01-04
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Vibrio cholerae
Macromolecule	transcriptional regulator, HTH_3 family (protein)
Unique Ligands	MED, ZN

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1YLF \| pdb_00001ylf	Download File View File

X-ray crystal structure of BC1842 protein from Bacillus cereus, a member of the Rrf2 family of putative transcription regulators.

Osipiuk, J., Wu, R., Moy, S., Collart, F., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2005-02-01
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bacillus cereus ATCC 14579
Macromolecule	RRF2 family protein (protein)
Unique Ligands	CL

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1YS6 \| pdb_00001ys6	Download File View File

Crystal structure of the response regulatory protein PrrA from Mycobacterium Tuberculosis

Nowak, E., Panjikar, S., Tucker, P., Mycobacterium Tuberculosis Structural Proteomics Project (XMTB)

To be published

Released	2006-02-07
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Transcriptional regulatory protein prrA (protein)
Unique Ligands	CA, GOL

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1YS7 \| pdb_00001ys7	Download File View File

Crystal structure of the response regulator protein prrA complexed with Mg2+

Nowak, E., Panjikar, S., Tucker, P., Mycobacterium Tuberculosis Structural Proteomics Project (XMTB)

(2006) J Biological Chem 281: 9659-9666

Released	2006-02-07
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Transcriptional regulatory protein prrA (protein)
Unique Ligands	ACT, GOL, MG, TRS

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1Z4E \| pdb_00001z4e	Download File View File

Crystal structure of transcriptional regulator from Bacillus halodurans C-125

Fedorov, A.A., Fedorov, E.V., Almo, S.C., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2005-06-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Halalkalibacterium halodurans C-125
Macromolecule	transcriptional regulator (protein)

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1Z72 \| pdb_00001z72	Download File View File

Structure of a putative transcriptional regulator from Streptococcus pneumoniae

Cuff, M.E., Zhou, M., Abdullah, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2005-05-17
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Streptococcus pneumoniae TIGR4
Macromolecule	transcriptional regulator, putative (protein)
Unique Ligands	ACY, MG

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1ZIT \| pdb_00001zit	Download File View File

Structure of the receiver domain of NtrC4 from Aquifex aeolicus

Matsubara, K., Pelton, J.G., Wemmer, D.E.

To be published

Released	2006-05-09
Method	SOLUTION NMR
Organisms	Aquifex aeolicus VF5
Macromolecule	transcriptional regulator (NtrC family) (protein)

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1ZK8 \| pdb_00001zk8	Download File View File

Crystal structure of transcriptional regulator from Bacillus cereus ATCC 14579

Nocek, B., Zhou, M., Holzle, D., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2005-06-14
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Bacillus cereus ATCC 14579
Macromolecule	Transcriptional regulator, TetR family (protein)

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1ZKG \| pdb_00001zkg	Download File View File

Crystal structure of Transcriptional regulator, TETR family (tm1030) from Thermotoga maritima at 2.30 A resolution

Joint Center for Structural Genomics (JCSG)

(2007) Proteins 68: 418-424

Released	2005-07-26
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermotoga maritima MSB8
Macromolecule	transcriptional regulator, TetR family (protein)
Unique Ligands	UNL

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1ZN2 \| pdb_00001zn2	Download File View File

Low Resolution Structure of Response Regulator StyR

Milani, M., Leoni, L., Rampioni, G., Zennaro, E., Ascenzi, P., Bolognesi, M.

(2005) Structure 13: 1289-1297

Released	2005-09-27
Method	X-RAY DIFFRACTION 2.91 Å
Organisms	Pseudomonas fluorescens
Macromolecule	response regulatory protein (protein)
Unique Ligands	MG

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1ZYB \| pdb_00001zyb	Download File View File

Crystal structure of transcription regulator from Bacteroides thetaiotaomicron VPI-5482 at 2.15 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2005-07-19
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	transcription regulator, CRP family (protein)
Unique Ligands	GOL

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2ABI \| pdb_00002abi	Download File View File

Crystal structure of the human mineralocorticoid receptor ligand-binding domain bound to deoxycorticosterone

Huyet, J., Pinon, G.-M., Rochel, M., Mayer, C., Rafestin-Oblin, M.-E., Fagart, J.

To be published

Released	2006-07-25
Method	X-RAY DIFFRACTION 2.33 Å
Organisms	Homo sapiens
Macromolecule	Mineralocorticoid receptor (protein)
Unique Ligands	1CA

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2BJC \| pdb_00002bjc	Download File View File

NMR structure of a protein-DNA complex of an altered specificity mutant of the lac repressor headpiece that mimics the gal repressor

Salinas, R.K., Folkers, G.E., Bonvin, A.M.J.J., Das, D., Boelens, R., Kaptein, R.

(2005) Chembiochem 6: 1628

Released	2005-10-18
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	LACTOSE OPERON REPRESSOR (protein) 5'-D(GPAPAPTPTPGPTPAPAPGP CPGPCPTPTPAPCPAPAPTPTPC)-3' (nucleic acid)

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2CZR \| pdb_00002czr	Download File View File

Crystal structure of TBP-interacting protein (Tk-TIP26) and implications for its inhibition mechanism of the interaction between TBP and TATA-DNA

Yamamoto, T., Matsuda, T., Inoue, T., Matsumura, H., Morikawa, M., Kanaya, S., Kai, Y.

(2006) Protein Sci 15: 152-161

Released	2006-02-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermococcus kodakarensis KOD1
Macromolecule	TBP-interacting protein (protein)
Unique Ligands	GOL, ZN

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2E7W \| pdb_00002e7w	Download File View File

Crystal structure of the Lrp/AsnC like transcriptional regulators from Sulfolobus tokodaii 7

Kumarevel, T.S., Karthe, P., Nakano, N., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2008) Nucleic Acids Res 36: 4808-4820

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Sulfurisphaera tokodaii
Macromolecule	150aa long hypothetical transcriptional regulator (protein)
Unique Ligands	GLN, MG

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2E7X \| pdb_00002e7x	Download File View File

Structure of the Lrp/AsnC like transcriptional regulator from Sulfolobus tokodaii 7 complexed with its cognate ligand

Kumarevel, T.S., Karthe, P., Nakano, N., Shinkai, A., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2008) Nucleic Acids Res 36: 4808-4820

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Sulfurisphaera tokodaii
Macromolecule	150aa long hypothetical transcriptional regulator (protein)
Unique Ligands	GLN, MG