RCSB PDB: Search

3AM7 \| pdb_00003am7	Download File View File

Crystal structure of the ternary complex of eIF4E-M7GTP-4EBP2 peptide

Tomoo, K., Fukuyo, A., In, Y., Ishida, T.

(2011) J Pept Sci 17: 650-657

Released	2011-08-17
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Eukaryotic translation initiation factor 4E (protein) Eukaryotic translation initiation factor 4E-binding protein 2 (protein)
Unique Ligands	MGP

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3TF2 \| pdb_00003tf2	Download File View File

Crystal structure of the cap free human translation initiation factor eIF4E

Siddiqui, N., Tempel, W., Nedyalkova, L., Wernimont, A.K., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Borden, K.L.B., Park, H., Structural Genomics Consortium (SGC)

(2012) J Mol Biology 415: 781-792

Released	2011-08-31
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Eukaryotic translation initiation factor 4E (protein)
Unique Ligands	UNX

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3U7X \| pdb_00003u7x	Download File View File

Crystal structure of the human eIF4E-4EBP1 peptide complex without cap

Siddiqui, N., Tempel, W., Nedyalkova, L., Wernimont, A.K., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Borden, K.L.B., Park, H., Structural Genomics Consortium (SGC)

(2012) J Mol Biology 415: 781-792

Released	2011-11-02
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Eukaryotic translation initiation factor 4E (protein) Eukaryotic translation initiation factor 4E-binding protein 1 (protein)
Unique Ligands	SO4, UNX

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4BEA \| pdb_00004bea	Download File View File

Crystal Structure of eIF4E in Complex with a Stapled Peptide Derivative

Quah, S.T., Lama, D., Verma, C.S., Lane, D.P., Brown, C.J.

(2013) Sci Rep 3: 3451

Released	2013-12-11
Method	X-RAY DIFFRACTION 2.57 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Eukaryotic translation initiation factor 4E (protein) STAPLED EIF4E INTERACTING PEPTIDE (protein)

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4DT6 \| pdb_00004dt6	Download File View File

Co-crystal structure of eIF4E with inhibitor

Min, X., Johnstone, S., Walker, N., Wang, Z.

(2012) J Med Chem 55: 3837-3851

Released	2012-04-11
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Eukaryotic translation initiation factor 4E (protein)
Unique Ligands	6LI, EDO, GOL

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4DUM \| pdb_00004dum	Download File View File

Co-crystal structure of eIF4E with inhibitor

Min, X., Johnstone, S., Walker, N., Wang, Z.

(2012) J Med Chem 55: 3837-3851

Released	2012-04-11
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Homo sapiens
Macromolecule	Eukaryotic translation initiation factor 4E (protein)
Unique Ligands	EDO, HLI

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4TPW \| pdb_00004tpw	Download File View File

The co-complex structure of the translation initiation factor eIF4E with the inhibitor 4EGI-1 reveals an allosteric mechanism for dissociating eIF4G

Papadopoulos, E., Jenni, S., Wagner, G.

(2014) Proc Natl Acad Sci U S A 111: E3187-E3195

Released	2014-08-13
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Eukaryotic translation initiation factor 4E (protein)
Unique Ligands	33R, MES, MGP

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4TQB \| pdb_00004tqb	Download File View File

The co-complex structure of the translation initiation factor eIF4E with the inhibitor 4EGI-1 reveals an allosteric mechanism for dissociating eIF4G

Papadopoulos, E., Jenni, S., Wagner, G.

(2014) Proc Natl Acad Sci U S A 111: E3187-E3195

Released	2014-08-13
Method	X-RAY DIFFRACTION 1.59 Å
Organisms	Homo sapiens
Macromolecule	Eukaryotic translation initiation factor 4E (protein)
Unique Ligands	34K, MES, MGT

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4TQC \| pdb_00004tqc	Download File View File

The co-complex structure of the translation initiation factor eIF4E with the inhibitor 4EGI-1 reveals an allosteric mechanism for dissociating eIF4G

Papadopoulos, E., Jenni, S., Wagner, G.

(2014) Proc Natl Acad Sci U S A 111: E3187-E3195

Released	2014-08-13
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Eukaryotic translation initiation factor 4E (protein)
Unique Ligands	34J, M7G

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5EHC \| pdb_00005ehc	Download File View File

Co-crystal structure of eIF4E with nucleotide mimetic inhibitor.

Nowicki, M.W., Walkinshaw, M.D., Fischer, P.M.

(2016) Eur J Med Chem 124: 200-217

Released	2016-09-07
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Eukaryotic translation initiation factor 4 gamma 1 (protein) Eukaryotic translation initiation factor 4E (protein)
Unique Ligands	5NX

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5EI3 \| pdb_00005ei3	Download File View File

Co-crystal structure of eIF4E with nucleotide mimetic inhibitor.

Nowicki, M.W., Walkinshaw, M.D., Fischer, P.M.

(2016) Eur J Med Chem 124: 200-217

Released	2016-09-07
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Eukaryotic translation initiation factor 4 gamma (protein) Eukaryotic translation initiation factor 4E (protein)
Unique Ligands	5O8, SO4

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5EIR \| pdb_00005eir	Download File View File

Co-crystal structure of eIF4E with nucleotide mimetic inhibitor.

Nowicki, M.W., Walkinshaw, M.D., Fischer, P.M.

(2016) Eur J Med Chem 124: 200-217

Released	2016-09-07
Method	X-RAY DIFFRACTION 2.69 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Eukaryotic translation initiation factor 4 gamma 1 (protein) Eukaryotic translation initiation factor 4E (protein)
Unique Ligands	5O8, SO4

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5EKV \| pdb_00005ekv	Download File View File

Co-crystal structure of eIF4E with nucleotide mimetic inhibitor.

Nowicki, M.W., Walkinshaw, M.D., Fischer, P.M.

(2016) Eur J Med Chem 124: 200-217

Released	2016-09-07
Method	X-RAY DIFFRACTION 3.61 Å
Organisms	Homo sapiens
Macromolecule	Eukaryotic translation initiation factor 4E (protein) Eukaryotic translation initiation factor 4E-binding protein 1 (protein)
Unique Ligands	5PQ

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5GW6 \| pdb_00005gw6	Download File View File

Water-Bridge Mediates Recognition of mRNA Cap in eIF4E

Brown, C.J.

(2017) Structure 25: 188-194

Released	2016-10-19
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Homo sapiens
Macromolecule	Eukaryotic translation initiation factor 4E (protein)
Unique Ligands	GOL

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5T46 \| pdb_00005t46	Download File View File

Crystal structure of the human eIF4E-eIF4G complex

Gruener, S., Peter, D., Weber, R., Wohlbold, L., Chung, M.-Y., Weichenrieder, O., Valkov, E., Igreja, C., Izaurralde, E.

(2016) Mol Cell 64: 467-479

Released	2016-10-26
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Homo sapiens
Macromolecule	Eukaryotic translation initiation factor 4 gamma 1 (protein) Eukaryotic translation initiation factor 4E (protein)
Unique Ligands	GOL, MGP

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5ZJY \| pdb_00005zjy	Download File View File

Stapled-peptides tailored against initiation of translation

Lama, D., Liberator, A., Frosi, Y., Nakhle, J., Tsomia, N., Bashir, T., Lane, D.P., Brown, C.J., Verma, C.S., Auvin, S., Ciesielski, B., Uhring, M.

(2019) Chem Sci 10: 2489-2500

Released	2019-03-20
Method	X-RAY DIFFRACTION 1.59 Å
Organisms	Homo sapiens
Macromolecule	Eukaryotic translation initiation factor 4E (protein) LYS-LYS-ARG-TYR-SER-ARG-2JN-GLN-LEU-LEU-2JN-PHE (protein)
Unique Ligands	MGP

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5ZJZ \| pdb_00005zjz	Download File View File

Stapled-peptides tailored against initiation of translation

Lama, D., Liberator, A., Frosi, Y., Nakhle, J., Tsomia, N., Bashir, T., Lane, D.P., Brown, C.J., Verma, C.S., Auvin, S., Ciesielski, F., Uhring, M.

(2019) Chem Sci 10: 2489-2500

Released	2019-02-20
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Homo sapiens
Macromolecule	Eukaryotic translation initiation factor 4 gamma 1 (protein) Eukaryotic translation initiation factor 4E (protein)
Unique Ligands	MGT

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5ZK5 \| pdb_00005zk5	Download File View File

Stapled-peptides tailored against initiation of translation

Lama, D., Liberator, A., Frosi, Y., Nakhle, J., Tsomia, N., Bashir, T., Lane, D.P., Brown, C.J., Verma, C.S., Auvin, S., Ciesielski, F., Uhring, M.

(2019) Chem Sci 10: 2489-2500

Released	2019-02-20
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	Eukaryotic translation initiation factor 4E (protein) LYS-ARG-TYR-SER-ARG-GLU-GLN-LEU-LEU-MK8-PHE-GLN-ARG-MK8 (protein)
Unique Ligands	MGT

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5ZK7 \| pdb_00005zk7	Download File View File

Stapled-peptides tailored against initiation of translation

Lama, D., Liberator, A., Frosi, Y., Nakhle, J., Tsomia, N., Bashir, T., Lane, D.P., Brown, C.J., Verma, C.S., Auvin, S., Ciesielski, F., Uhring, M.

(2019) Chem Sci 10: 2489-2500

Released	2019-02-20
Method	X-RAY DIFFRACTION 2.12 Å
Organisms	Homo sapiens
Macromolecule	ACE-ARG-TYR-SER-ARG-MK8-GLN-LEU-LEU-MK8-LEU-PHE-ARG-NH2 (protein) Eukaryotic translation initiation factor 4E (protein)
Unique Ligands	CL, GOL, IOD, MGT

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5ZK9 \| pdb_00005zk9	Download File View File

Stapled-peptides tailored against initiation of translation

Lama, D., Liberator, A., Frosi, Y., Nakhle, J., Tsomia, N., Bashir, T., Lane, D.P., Brown, C.J., Verma, C.S., Auvin, S., Ciesielski, F., Uhring, M.

(2019) Chem Sci 10: 2489-2500

Released	2019-02-20
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Homo sapiens
Macromolecule	ACE-ARG-ILE-ILE-TYR-SER-ARG-MK8-GLN-LEU-LEU-MK8-LEU-LYS-NH2 (protein) Eukaryotic translation initiation factor 4E (protein)
Unique Ligands	GOL, MGP, PEG

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5ZML \| pdb_00005zml	Download File View File

Stapled-peptides tailored against initiation of translation

Lama, D., Liberator, A., Frosi, Y., Nakhle, J., Tsomia, N., Bashir, T., Lane, D.P., Brown, C.J., Verma, C.S., Auvin, S., Yano, J.

(2019) Chem Sci 10: 2489-2500

Released	2019-02-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	ACE-LYS-LYS-ARG-TYR-SER-ARG-MK8-GLN-LEU-LEU-MK8-PHE-ARG-ARG (protein) Eukaryotic translation initiation factor 4E (protein)
Unique Ligands	EDO, NO3

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7D6Y \| pdb_00007d6y	Download File View File

eIF4E in Complex with a Disulphide-Free Autonomous VH Domain

Brown, C.J., Frosi, Y., Jiang, S., Lin, Y.C.

To be published

Released	2021-10-06
Method	X-RAY DIFFRACTION 1.668 Å
Organisms	Homo sapiens
Macromolecule	Eukaryotic translation initiation factor 4E (protein) VH Domain (1C5) (protein)
Unique Ligands	MES, MGO

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7D8B \| pdb_00007d8b	Download File View File

Engineering Disulphide-Free Autonomous Antibody VH Domains to modulate intracellular pathways

Frosi, Y., Lin, Y.C., Jiang, S., Brown, C.J.

(2022) Nat Commun 13: 4854-4854

Released	2021-08-25
Method	X-RAY DIFFRACTION 2.46 Å
Organisms	Homo sapiens
Macromolecule	Eukaryotic translation initiation factor 4E (protein) VH-S4 (protein)

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7EZW \| pdb_00007ezw	Download File View File

Cyclic Peptide that Interacts with the eIF4E Capped-mRNA Binding Site

Brown, C.J., Ng, S., Frosi, Y.

(2022) RSC Chem Biol 3: 916-930

Released	2022-06-08
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	ALA-CYS-GLU-MET-GLY-PHE-PHE-GLN-ASP-CYS-GLY (protein) Eukaryotic translation initiation factor 4E (protein)
Unique Ligands	NA

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7F07 \| pdb_00007f07	Download File View File

Autonomous VH domain that interacts with eIF4E at the Capped mRNA Binding site.

Brown, C.J., Frosi, Y., Ng, S., Lin, Y.C.

(2022) RSC Chem Biol 3: 916-930

Released	2022-06-08
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Eukaryotic translation initiation factor 4E (protein) VH domain (VH-DiFCAP-01) (protein)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

SCOP Classification

3AM7 | pdb_00003am7

3TF2 | pdb_00003tf2

3U7X | pdb_00003u7x

4BEA | pdb_00004bea

4DT6 | pdb_00004dt6

4DUM | pdb_00004dum

4TPW | pdb_00004tpw

4TQB | pdb_00004tqb

4TQC | pdb_00004tqc

5EHC | pdb_00005ehc

5EI3 | pdb_00005ei3

5EIR | pdb_00005eir

5EKV | pdb_00005ekv

5GW6 | pdb_00005gw6

5T46 | pdb_00005t46

5ZJY | pdb_00005zjy

5ZJZ | pdb_00005zjz

5ZK5 | pdb_00005zk5

5ZK7 | pdb_00005zk7

5ZK9 | pdb_00005zk9

5ZML | pdb_00005zml

7D6Y | pdb_00007d6y

7D8B | pdb_00007d8b

7EZW | pdb_00007ezw

7F07 | pdb_00007f07