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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "MPR1"

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Search Summary

This query matches 13 Structures.

Refinements

Structure Determination Methodology

experimental (13)

Scientific Name of Source Organism

	Saccharomyces cerevisiae S288C (10)
	Lama glama (3)
	Saccharomyces cerevisiae (2)
	Homo sapiens (1)
	Saccharomyces cerevisiae Sigma1278b (1)

Taxonomy

Eukaryota (13)

Experimental Method

	X-RAY DIFFRACTION (11)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

Protein (13)

Refinement Resolution (Å)

	1.5 - 2.0 (5)
	2.0 - 2.5 (5)
	2.5 - 3.0 (1)
	3.5 - 4.0 (1)
	4.0 - 4.5 (1)

Release Date

	2010 - 2014 (8)
	2015 - 2019 (5)

Enzyme Classification Name

	Hydrolases (10)
	Transferases (3)

Symmetry Type

	Asymmetric (10)
	Cyclic (4)

SCOP Classification

	Alpha and beta proteins (a/b) (8)
	Artifacts (5)
	All beta proteins (3)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 13 of 13 Structures

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3JCK \| pdb_00003jck	Download File View File

Structure of the yeast 26S proteasome lid sub-complex

Herzik Jr., M.A., Dambacher, C.M., Worden, E.J., Martin, A., Lander, G.C.

(2016) Elife 5: e13027-e13027

Released	2016-01-20
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 9
Unique Ligands	ZN

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3W6S \| pdb_00003w6s	Download File View File

yeast N-acetyltransferase Mpr1 involved in oxidative stress tolerance via proline metabolism

Nasuno, R., Hirano, Y., Itoh, T., Hakoshima, T., Hibi, T., Takagi, H.

(2013) Proc Natl Acad Sci U S A 110: 11821-11826

Released	2013-07-17
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Saccharomyces cerevisiae Sigma1278b
Macromolecule	MPR1 protein (protein)
Unique Ligands	MG, P6G

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3W6X \| pdb_00003w6x	Download File View File

Yeast N-acetyltransferase Mpr1 in complex with CHOP

Nasuno, R., Hirano, Y., Itoh, T., Hakoshima, T., Hibi, T., Takagi, H.

(2013) Proc Natl Acad Sci U S A 110: 11821-11826

Released	2013-08-07
Method	X-RAY DIFFRACTION 2.299 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	MPR1 protein (protein)
Unique Ligands	CL, HZP, P6G

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3W91 \| pdb_00003w91	Download File View File

crystal structure of SeMet-labeled yeast N-acetyltransferase Mpr1 L87M mutant

Nasuno, R., Hirano, Y., Itoh, T., Hakoshima, T., Hibi, T., Takagi, H.

(2013) Proc Natl Acad Sci U S A 110: 11821-11826

Released	2013-07-17
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	MPR1 protein (protein)

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4O8X \| pdb_00004o8x	Download File View File

Zinc-bound Rpn11 in complex with Rpn8

Worden, E.J., Padovani, C., Martin, A.

(2014) Nat Struct Mol Biol 21: 220-227

Released	2014-01-22
Method	X-RAY DIFFRACTION 1.991 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	26S proteasome regulatory subunit RPN11 (protein) 26S proteasome regulatory subunit RPN8 (protein)
Unique Ligands	EDO, ZN

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4O8Y \| pdb_00004o8y	Download File View File

Zinc-free Rpn11 in complex with Rpn8

Worden, E.J., Padovani, C., Martin, A.

(2014) Nat Struct Mol Biol 21: 220-227

Released	2014-01-22
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	26S proteasome regulatory subunit RPN11 (protein) 26S proteasome regulatory subunit RPN8 (protein)
Unique Ligands	EDO

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4OCL \| pdb_00004ocl	Download File View File

Crystal Structure of the Rpn8-Rpn11 MPN domain heterodimer, crystal form Ia

Pathare, G.R., Bracher, A.

(2014) Proc Natl Acad Sci U S A 111: 2984-2989

Released	2014-01-29
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Lama glama Saccharomyces cerevisiae S288C
Macromolecule	26S proteasome regulatory subunit RPN11 (protein) 26S proteasome regulatory subunit RPN8 (protein) Nb1 (protein)
Unique Ligands	ZN

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4OCM \| pdb_00004ocm	Download File View File

Crystal Structure of the Rpn8-Rpn11 MPN domain heterodimer, crystal form Ib

Pathare, G.R., Bracher, A.

(2014) Proc Natl Acad Sci U S A 111: 2984-2989

Released	2014-01-29
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Lama glama Saccharomyces cerevisiae S288C
Macromolecule	26S proteasome regulatory subunit RPN11 (protein) 26S proteasome regulatory subunit RPN8 (protein) Nb1 (protein)
Unique Ligands	K, ZN

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4OCN \| pdb_00004ocn	Download File View File

Crystal Structure of the Rpn8-Rpn11 MPN domain heterodimer, crystal form II

Pathare, G.R., Bracher, A.

(2014) Proc Natl Acad Sci U S A 111: 2984-2989

Released	2014-01-29
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Lama glama Saccharomyces cerevisiae S288C
Macromolecule	26S proteasome regulatory subunit RPN11 (protein) 26S proteasome regulatory subunit RPN8 (protein) Nb1 (protein)

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4OWP \| pdb_00004owp	Download File View File

Crystal structure of rpn11 in a heterodimer complex with rpn8, representing the active portion of the proteasome lid.

Yu, Z., Mansour, W., Nakasone, M.A., Glickman, M.H., Dvir, H.

To be published

Released	2015-08-05
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	26S proteasome regulatory subunit RPN11 (protein) 26S proteasome regulatory subunit RPN8 (protein)
Unique Ligands	ZN

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5U4P \| pdb_00005u4p	Download File View File

Protein-protein complex between 26S proteasome regulatory subunit RPN8, RPN11, and Ubiquitin S31

Worden, E.J., Dong, K.C., Martin, A.

(2017) Mol Cell 67: 799-811.e8

Released	2017-09-06
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	26S proteasome regulatory subunit RPN11 (protein) 26S proteasome regulatory subunit RPN8 (protein) Ubiquitin-40S ribosomal protein S31 (protein)
Unique Ligands	ZN

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5W83 \| pdb_00005w83	Download File View File

Rpn8/Rpn11 dimer complex

Dong, K.C., Worden, E.J., Martin, A.

(2017) Mol Cell 67: 799-811.e8

Released	2017-09-06
Method	X-RAY DIFFRACTION 1.554 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	26S proteasome regulatory subunit RPN8 (protein) Ubiquitin carboxyl-terminal hydrolase RPN11 (protein)
Unique Ligands	ZN

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6EF3 \| pdb_00006ef3	Download File View File

Yeast 26S proteasome bound to ubiquitinated substrate (4D motor state)

de la Pena, A.H., Goodall, E.A., Gates, S.N., Lander, G.C., Martin, A.

(2018) Science 362:

Released	2018-10-17
Method	ELECTRON MICROSCOPY 4.17 Å
Organisms	Homo sapiens Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 24
Unique Ligands	ADP, ATP

1 to 13 of 13 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3JCK | pdb_00003jck

Structure of the yeast 26S proteasome lid sub-complex

3W6S | pdb_00003w6s

yeast N-acetyltransferase Mpr1 involved in oxidative stress tolerance via proline metabolism

3W6X | pdb_00003w6x

Yeast N-acetyltransferase Mpr1 in complex with CHOP

3W91 | pdb_00003w91

crystal structure of SeMet-labeled yeast N-acetyltransferase Mpr1 L87M mutant

4O8X | pdb_00004o8x

Zinc-bound Rpn11 in complex with Rpn8

4O8Y | pdb_00004o8y

Zinc-free Rpn11 in complex with Rpn8

4OCL | pdb_00004ocl

Crystal Structure of the Rpn8-Rpn11 MPN domain heterodimer, crystal form Ia

4OCM | pdb_00004ocm

Crystal Structure of the Rpn8-Rpn11 MPN domain heterodimer, crystal form Ib

4OCN | pdb_00004ocn

Crystal Structure of the Rpn8-Rpn11 MPN domain heterodimer, crystal form II

4OWP | pdb_00004owp

Crystal structure of rpn11 in a heterodimer complex with rpn8, representing the active portion of the proteasome lid.

5U4P | pdb_00005u4p

Protein-protein complex between 26S proteasome regulatory subunit RPN8, RPN11, and Ubiquitin S31

5W83 | pdb_00005w83

Rpn8/Rpn11 dimer complex

6EF3 | pdb_00006ef3

Yeast 26S proteasome bound to ubiquitinated substrate (4D motor state)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3JCK | pdb_00003jck

3W6S | pdb_00003w6s

3W6X | pdb_00003w6x

3W91 | pdb_00003w91

4O8X | pdb_00004o8x

4O8Y | pdb_00004o8y

4OCL | pdb_00004ocl

4OCM | pdb_00004ocm

4OCN | pdb_00004ocn

4OWP | pdb_00004owp

5U4P | pdb_00005u4p

5W83 | pdb_00005w83

6EF3 | pdb_00006ef3