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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "clpC"

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Search Summary

This query matches 17 Structures.

Refinements

Structure Determination Methodology

experimental (17)

Scientific Name of Source Organism

	Bacillus subtilis subsp. subtilis str. 168 (5)
	Mycobacterium tuberculosis (4)
	Streptomyces sp. (3)
	Bacillus subtilis (2)
	Staphylococcus aureus (2)
	Staphylococcus aureus RF122 (2)
	Clostridioides difficile 630 (1)
	Corynebacterium glutamicum (1)
	Mycobacterium tuberculosis H37Rv (1)
	unidentified (1)

Taxonomy

	Bacteria (17)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (9)
	ELECTRON MICROSCOPY (7)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (17)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (3)
	2.0 - 2.5 (1)
	3.5 - 4.0 (1)
	> 4.5 (7)

Release Date

	2005 - 2009 (3)
	2010 - 2014 (8)
	2015 - 2019 (4)
	2020 - 2024 (2)

Enzyme Classification Name

Hydrolases (1)

Symmetry Type

	Asymmetric (13)
	Cyclic (4)

AllSelected

1 to 17 of 17 Structures

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2K77 \| pdb_00002k77	Download File View File

NMR solution structure of the Bacillus subtilis ClpC N-domain

Kojetin, D.J., McLaughlin, P.D., Thompson, R.J., Rance, M., Cavanagh, J.

(2009) J Mol Biology 387: 639-652

Released	2009-04-28
Method	SOLUTION NMR
Organisms	Bacillus subtilis
Macromolecule	Negative regulator of genetic competence clpC/mecB (protein)

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3FES \| pdb_00003fes	Download File View File

Crystal Structure of the ATP-dependent Clp Protease ClpC from Clostridium difficile

Kim, Y., Tesar, C., Li, H., Cobb, G., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2008-12-16
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Clostridioides difficile 630
Macromolecule	ATP-dependent Clp endopeptidase (protein)
Unique Ligands	EPE, MG, PG4

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3FH2 \| pdb_00003fh2	Download File View File

The crystal structure of the PROBABLE ATP-DEPENDENT PROTEASE (HEAT SHOCK PROTEIN) from Corynebacterium glutamicum

Zhang, R., Li, H., Freeman, L., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2008-12-23
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Corynebacterium glutamicum
Macromolecule	PROBABLE ATP-DEPENDENT PROTEASE (HEAT SHOCK PROTEIN) (protein)

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3J3S \| pdb_00003j3s	Download File View File

Structural dynamics of the MecA-ClpC complex revealed by cryo-EM

Liu, J., Mei, Z., Li, N., Qi, Y., Xu, Y., Shi, Y., Wang, F., Lei, J., Gao, N.

(2013) J Biological Chem 288: 17597-17608

Released	2013-05-15
Method	ELECTRON MICROSCOPY 11 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Adapter protein MecA 1 (protein) Negative regulator of genetic competence ClpC/MecB (protein)

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3J3T \| pdb_00003j3t	Download File View File

Structural dynamics of the MecA-ClpC complex revealed by cryo-EM

Liu, J., Mei, Z., Li, N., Qi, Y., Xu, Y., Shi, Y., Wang, F., Lei, J., Gao, N.

(2013) J Biological Chem 288: 17597-17608

Released	2013-05-15
Method	ELECTRON MICROSCOPY 9 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Adapter protein MecA 1 (protein) Negative regulator of genetic competence ClpC/MecB (protein)

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3J3U \| pdb_00003j3u	Download File View File

Structural dynamics of the MecA-ClpC complex revealed by cryo-EM

Liu, J., Mei, Z., Li, N., Qi, Y., Xu, Y., Shi, Y., Wang, F., Lei, J., Gao, N.

(2013) J Biological Chem 288: 17597-17608

Released	2013-05-15
Method	ELECTRON MICROSCOPY 10 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Adapter protein MecA 1 (protein) Negative regulator of genetic competence ClpC/MecB (protein)

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3PXI \| pdb_00003pxi	Download File View File

Structure of MecA108:ClpC

Wang, F., Mei, Z.Q., Wang, J.W., Shi, Y.G.

(2011) Nature 471: 331-335

Released	2011-03-16
Method	X-RAY DIFFRACTION 6.926 Å
Organisms	Bacillus subtilis
Macromolecule	Adapter protein mecA 1 (protein) Negative regulator of genetic competence ClpC/MecB (protein)

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3WDB \| pdb_00003wdb	Download File View File

N-terminal domain of Mycobacterium tuberculosis ClpC1

Vasudevan, D., Noble, C.G.

(2013) J Biological Chem 288: 30883-30891

Released	2013-09-18
Method	X-RAY DIFFRACTION 1.37 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Probable ATP-dependent Clp protease ATP-binding subunit (protein)
Unique Ligands	FMT

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3WDC \| pdb_00003wdc	Download File View File

N-terminal domain of Mycobacterium tuberculosis ClpC1 bound to Cyclomarin A

Vasudevan, D., Noble, C.G.

(2013) J Biological Chem 288: 30883-30891

Released	2013-09-18
Method	X-RAY DIFFRACTION 1.18 Å
Organisms	Mycobacterium tuberculosis Streptomyces sp.
Macromolecule	Cyclomarin A (protein) Probable ATP-dependent Clp protease ATP-binding subunit (protein)
Unique Ligands	ACT

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3WDD \| pdb_00003wdd	Download File View File

Mutant N-terminal domain of Mycobacterium tuberculosis ClpC1, F2Y, bound to Cyclomarin A

Vasudevan, D., Noble, C.G.

(2013) J Biological Chem 288: 30883-30891

Released	2013-09-18
Method	X-RAY DIFFRACTION 1.18 Å
Organisms	Mycobacterium tuberculosis Streptomyces sp.
Macromolecule	Cyclomarin A (protein) Probable ATP-dependent Clp protease ATP-binding subunit (protein)
Unique Ligands	ACT

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3WDE \| pdb_00003wde	Download File View File

Mutant N-terminal domain of Mycobacterium tuberculosis ClpC1, F80Y, bound to Cyclomarin A

Vasudevan, D., Noble, C.G.

(2013) J Biological Chem 288: 30883-30891

Released	2013-09-18
Method	X-RAY DIFFRACTION 1.44 Å
Organisms	Mycobacterium tuberculosis Streptomyces sp.
Macromolecule	Cyclomarin A (protein) Probable ATP-dependent Clp protease ATP-binding subunit (protein)
Unique Ligands	ACT

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5HBN \| pdb_00005hbn	Download File View File

ClpC N-terminal domain with bound phospho-arginine

Suskiewicz, M.J., Clausen, T.

(2016) Nature 539: 48-53

Released	2016-10-12
Method	X-RAY DIFFRACTION 1.602 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Negative regulator of genetic competence ClpC/MecB (protein)
Unique Ligands	ACT, RPI, SO4

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6EM8 \| pdb_00006em8	Download File View File

S.aureus ClpC resting state, C2 symmetrised

Carroni, M., Mogk, A.

(2017) Elife 6:

Released	2017-12-27
Method	ELECTRON MICROSCOPY 8.4 Å
Organisms	Staphylococcus aureus
Macromolecule	ATP-dependent Clp protease ATP-binding subunit ClpC (protein)

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6EM9 \| pdb_00006em9	Download File View File

S.aureus ClpC resting state, asymmetric map

Carroni, M., Mogk, A., Bukau, B., Franke, K.

(2017) Elife 6:

Released	2017-12-27
Method	ELECTRON MICROSCOPY 8.4 Å
Organisms	Staphylococcus aureus RF122
Macromolecule	ATP-dependent Clp protease ATP-binding subunit ClpC (protein)

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6EMW \| pdb_00006emw	Download File View File

Structure of S.aureus ClpC in complex with MecA

Carroni, M., Mogk, A., Bukau, B., Franke, K.

(2017) Elife 6:

Released	2017-12-27
Method	ELECTRON MICROSCOPY 11 Å
Organisms	Staphylococcus aureus Staphylococcus aureus RF122
Macromolecule	Unique protein chains: 7

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6UCR \| pdb_00006ucr	Download File View File

Structure of ClpC1-NTD L92S L96P

Abad-Zapatero, C., Wolf, N.M.

(2020) Acta Crystallogr D Struct Biol 76: 458-471

Released	2020-05-13
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Negative regulator of genetic competence ClpC/mecB (protein)
Unique Ligands	ACT

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7ABR \| pdb_00007abr	Download File View File

Cryo-EM structure of B. subtilis ClpC (DWB mutant) hexamer bound to a substrate polypeptide

Morreale, F.E., Meinhart, A., Haselbach, D., Clausen, T.

(2022) Cell 185: 2338

Released	2021-10-06
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168 unidentified
Macromolecule	Negative regulator of genetic competence ClpC/MecB (protein) substrate polypeptide (protein)
Unique Ligands	ADP, ATP

1 to 17 of 17 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2K77 | pdb_00002k77

NMR solution structure of the Bacillus subtilis ClpC N-domain

3FES | pdb_00003fes

Crystal Structure of the ATP-dependent Clp Protease ClpC from Clostridium difficile

3FH2 | pdb_00003fh2

The crystal structure of the PROBABLE ATP-DEPENDENT PROTEASE (HEAT SHOCK PROTEIN) from Corynebacterium glutamicum

3J3S | pdb_00003j3s

Structural dynamics of the MecA-ClpC complex revealed by cryo-EM

3J3T | pdb_00003j3t

Structural dynamics of the MecA-ClpC complex revealed by cryo-EM

3J3U | pdb_00003j3u

Structural dynamics of the MecA-ClpC complex revealed by cryo-EM

3PXI | pdb_00003pxi

Structure of MecA108:ClpC

3WDB | pdb_00003wdb

N-terminal domain of Mycobacterium tuberculosis ClpC1

3WDC | pdb_00003wdc

N-terminal domain of Mycobacterium tuberculosis ClpC1 bound to Cyclomarin A

3WDD | pdb_00003wdd

Mutant N-terminal domain of Mycobacterium tuberculosis ClpC1, F2Y, bound to Cyclomarin A

3WDE | pdb_00003wde

Mutant N-terminal domain of Mycobacterium tuberculosis ClpC1, F80Y, bound to Cyclomarin A

5HBN | pdb_00005hbn

ClpC N-terminal domain with bound phospho-arginine

6EM8 | pdb_00006em8

S.aureus ClpC resting state, C2 symmetrised

6EM9 | pdb_00006em9

S.aureus ClpC resting state, asymmetric map

6EMW | pdb_00006emw

Structure of S.aureus ClpC in complex with MecA

6UCR | pdb_00006ucr

Structure of ClpC1-NTD L92S L96P

7ABR | pdb_00007abr

Cryo-EM structure of B. subtilis ClpC (DWB mutant) hexamer bound to a substrate polypeptide

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

2K77 | pdb_00002k77

3FES | pdb_00003fes

3FH2 | pdb_00003fh2

3J3S | pdb_00003j3s

3J3T | pdb_00003j3t

3J3U | pdb_00003j3u

3PXI | pdb_00003pxi

3WDB | pdb_00003wdb

3WDC | pdb_00003wdc

3WDD | pdb_00003wdd

3WDE | pdb_00003wde

5HBN | pdb_00005hbn

6EM8 | pdb_00006em8

6EM9 | pdb_00006em9

6EMW | pdb_00006emw

6UCR | pdb_00006ucr

7ABR | pdb_00007abr