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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "pfdA"

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Search Summary

This query matches 45 Structures.

Refinements

Structure Determination Methodology

experimental (45)

Scientific Name of Source Organism

	Clostridium beijerinckii (31)
	Clostridium beijerinckii NCIMB 8052 (14)
	Thermoanaerobacter brockii (3)

Taxonomy

Bacteria (45)

Experimental Method

	X-RAY DIFFRACTION (44)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

	Protein (43)
	RNA (2)

Refinement Resolution (Å)

	1.5 - 2.0 (25)
	2.0 - 2.5 (15)
	2.5 - 3.0 (5)

Release Date

	1995 - 1999 (18)
	2000 - 2004 (1)
	2005 - 2009 (4)
	2010 - 2014 (8)
	2015 - 2019 (6)
	2020 - 2024 (7)
	2025 - 2029 (1)

Enzyme Classification Name

	Oxidoreductases (10)
	Transferases (2)

Symmetry Type

	Asymmetric (28)
	Dihedral (10)
	Cyclic (6)

SCOP Classification

	All beta proteins (11)
	Alpha and beta proteins (a/b) (23)
	Artifacts (2)
	Alpha and beta proteins (a+b) (2)

AllSelected

1 to 25 of 45 Structures

Page 1 of 2

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1FLA	Download File View File

CLOSTRIDIUM BEIJERINCKII FLAVODOXIN MUTANT: G57D REDUCED

Ludwig, M.L., Pattridge, K.A., Metzger, A.L., Dixon, M.M., Eren, M., Feng, Y., Swenson, R.

(1997) Biochemistry 36: 1259-1280

Released	1997-03-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Clostridium beijerinckii
Macromolecule	FLAVODOXIN (protein)
Unique Ligands	FMN

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1FLD	Download File View File

CLOSTRIDIUM BEIJERINCKII FLAVODOXIN MUTANT: G57T OXIDIZED

Ludwig, M.L., Pattridge, K.A., Metzger, A.L., Dixon, M.M., Eren, M., Feng, Y., Swenson, R.

(1997) Biochemistry 36: 1259-1280

Released	1997-03-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Clostridium beijerinckii
Macromolecule	FLAVODOXIN (protein)
Unique Ligands	FMN

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1FLN	Download File View File

CLOSTRIDIUM BEIJERINCKII FLAVODOXIN MUTANT: D58P REDUCED

Ludwig, M.L., Pattridge, K.A., Metzger, A.L., Dixon, M.M., Eren, M., Feng, Y., Swenson, R.

(1997) Biochemistry 36: 1259-1280

Released	1997-03-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Clostridium beijerinckii
Macromolecule	FLAVODOXIN (protein)
Unique Ligands	FMN

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1FVX	Download File View File

CLOSTRIDIUM BEIJERINCKII FLAVODOXIN MUTANT: G57N OXIDIZED

Ludwig, M.L., Pattridge, K.A., Metzger, A.L., Dixon, M.M., Eren, M., Feng, Y., Swenson, R.

(1997) Biochemistry 36: 1259-1280

Released	1997-03-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Clostridium beijerinckii
Macromolecule	FLAVODOXIN (protein)
Unique Ligands	FMN

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1JQB	Download File View File

Alcohol Dehydrogenase from Clostridium Beijerinckii: Crystal Structure of Mutant with Enhanced Thermal Stability

Levin, I., Frolow, F., Bogin, O., Peretz, M., Hacham, Y., Burstein, Y.

(2002) Protein Sci 11: 2561-2574

Released	2002-11-13
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Clostridium beijerinckii
Macromolecule	NADP-dependent Alcohol Dehydrogenase (protein)
Unique Ligands	ZN

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1KEV	Download File View File

STRUCTURE OF NADP-DEPENDENT ALCOHOL DEHYDROGENASE

Korkhin, Y., Frolow, F.

(1996) Acta Crystallogr D Biol Crystallogr 52: 882-886

Released	1997-10-22
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Clostridium beijerinckii
Macromolecule	NADP-DEPENDENT ALCOHOL DEHYDROGENASE (protein)
Unique Ligands	NDP, ZN

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1PED	Download File View File

BACTERIAL SECONDARY ALCOHOL DEHYDROGENASE (APO-FORM)

Korkhin, Y., Frolow, F.

(1996) Acta Crystallogr D Biol Crystallogr 52: 882-886

Released	1997-07-07
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Clostridium beijerinckii
Macromolecule	NADP-DEPENDENT ALCOHOL DEHYDROGENASE (protein)
Unique Ligands	ZN

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2B83	Download File View File

A single amino acid substitution in the Clostridium beijerinckii alcohol dehydrogenase is critical for thermostabilization

Goihberg, E., Dym, O., Israel Structural Proteomics Center (ISPC)

(2006) Proteins 66: 196-204

Released	2006-09-19
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Clostridium beijerinckii
Macromolecule	NADP-dependent alcohol dehydrogenase (protein)
Unique Ligands	ZN

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2FAX	Download File View File

CLOSTRIDIUM BEIJERINCKII FLAVODOXIN MUTANT: N137A OXIDIZED (150K)

Ludwig, M.L., Pattridge, K.A., Metzger, A.L., Dixon, M.M., Eren, M., Feng, Y., Swenson, R.

(1997) Biochemistry 36: 1259-1280

Released	1997-03-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Clostridium beijerinckii
Macromolecule	FLAVODOXIN (protein)
Unique Ligands	FMN

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2FDX	Download File View File

CLOSTRIDIUM BEIJERINCKII FLAVODOXIN MUTANT N137A OXIDIZED

Ludwig, M.L., Pattridge, K.A., Metzger, A.L., Dixon, M.M., Eren, M., Feng, Y., Swenson, R.

(1997) Biochemistry 36: 1259-1280

Released	1997-04-01
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Clostridium beijerinckii
Macromolecule	FLAVODOXIN (protein)
Unique Ligands	FMN

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2FLV	Download File View File

CLOSTRIDIUM BEIJERINCKII FLAVODOXIN MUTANT: G57T REDUCED (150K)

Ludwig, M.L., Pattridge, K.A., Metzger, A.L., Dixon, M.M., Eren, M., Feng, Y., Swenson, R.

(1997) Biochemistry 36: 1259-1280

Released	1997-03-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Clostridium beijerinckii
Macromolecule	FLAVODOXIN (protein)
Unique Ligands	FMN

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2FOX	Download File View File

CLOSTRIDIUM BEIJERINCKII FLAVODOXIN: SEMIQUINONE

Ludwig, M.L., Pattridge, K.A., Metzger, A.L., Dixon, M.M., Eren, M., Feng, Y., Swenson, R.

(1997) Biochemistry 36: 1259-1280

Released	1997-03-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Clostridium beijerinckii
Macromolecule	FLAVODOXIN (protein)
Unique Ligands	FMN

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2FVX	Download File View File

CLOSTRIDIUM BEIJERINCKII FLAVODOXIN MUTANT: G57T REDUCED (277K)

Ludwig, M.L., Pattridge, K.A., Metzger, A.L., Dixon, M.M., Eren, M., Feng, Y., Swenson, R.

(1997) Biochemistry 36: 1259-1280

Released	1997-03-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Clostridium beijerinckii
Macromolecule	FLAVODOXIN (protein)
Unique Ligands	FMN

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3FPL	Download File View File

Chimera of alcohol dehydrogenase by exchange of the cofactor binding domain res 153-295 of C. beijerinckii ADH by T. brockii ADH

Felix, F., Goihberg, E., Shimon, L., Burstein, Y.

(2010) Biochemistry 49: 1943-1953

Released	2010-01-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Clostridium beijerinckii Thermoanaerobacter brockii
Macromolecule	NADP-dependent alcohol dehydrogenase (protein)
Unique Ligands	CAC, CL, EDO, PGE, ZN

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3FSR	Download File View File

Chimera of alcohol dehydrogenase by exchange of the cofactor binding domain res 153-295 of T. brockii ADH by C. beijerinckii ADH

Frolow, F., Greenblatt, H., Goihberg, E., Burstein, Y.

(2010) Biochemistry 49: 1943-1953

Released	2010-01-19
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Clostridium beijerinckii Thermoanaerobacter brockii
Macromolecule	NADP-dependent alcohol dehydrogenase (protein)
Unique Ligands	CL, EDO, ZN

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3FTN	Download File View File

Q165E/S254K Double Mutant Chimera of alcohol dehydrogenase by exchange of the cofactor binding domain res 153-295 of T. brockii ADH by C. beijerinckii ADH

Frolow, F., Goihberg, E., Shimon, L., Burstein, Y.

(2010) Biochemistry 49: 1943-1953

Released	2010-01-26
Method	X-RAY DIFFRACTION 2.192 Å
Organisms	Clostridium beijerinckii Thermoanaerobacter brockii
Macromolecule	NADP-dependent alcohol dehydrogenase (protein)
Unique Ligands	ACT, CL, EDO, ZN

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3GY1	Download File View File

CRYSTAL STRUCTURE OF putative mandelate racemase/muconate lactonizing protein from Clostridium beijerinckii NCIMB 8052

Malashkevich, V.N., Toro, R., Morano, C., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2009-04-14
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Clostridium beijerinckii NCIMB 8052
Macromolecule	Mandelate racemase/muconate lactonizing protein (protein)
Unique Ligands	MG

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3I9H	Download File View File

Crystal structure of a betagamma-crystallin domain from Clostridium beijerinckii

Aravind, P., Sankaranarayanan, R.

(2009) Biochemistry

Released	2009-12-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Clostridium beijerinckii NCIMB 8052
Macromolecule	Beta and gamma crystallin (protein)
Unique Ligands	CA

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3IAJ	Download File View File

Crystal structure of a betagamma-crystallin domain from Clostridium beijerinckii-in alternate space group I422

Aravind, P., Sankaranarayanan, R.

(2009) Biochemistry

Released	2009-12-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Clostridium beijerinckii NCIMB 8052
Macromolecule	Beta and gamma crystallin (protein)
Unique Ligands	CA

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3NLL	Download File View File

CLOSTRIDIUM BEIJERINCKII FLAVODOXIN MUTANT: G57A OXIDIZED

Ludwig, M.L., Pattridge, K.A., Metzger, A.L., Dixon, M.M., Eren, M., Feng, Y., Swenson, R.

(1997) Biochemistry 36: 1259-1280

Released	1997-03-12
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Clostridium beijerinckii
Macromolecule	FLAVODOXIN (protein)
Unique Ligands	FMN

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3S47	Download File View File

Crystal structure of enolase superfamily member from Clostridium beijerincki complexed with Mg

Fedorov, A.A., Fedorov, E.V., Wichelecki, D., Gerlt, J.A., Almo, S.C.

To be published

Released	2012-05-23
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Clostridium beijerinckii NCIMB 8052
Macromolecule	Mandelate racemase/muconate lactonizing protein (protein)
Unique Ligands	MG