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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "sod2"

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Search Summary

This query matches 60 Structures.

Refinements

Structure Determination Methodology

experimental (60)

Scientific Name of Source Organism

	Escherichia coli K-12 (24)
	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (12)
	Escherichia coli (8)
	Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (8)
	Thermotoga maritima (6)
	Thermotoga maritima MSB8 (4)
	Escherichia coli O157:H7 (3)
	Escherichia coli (strain K12) (2)
	Methanococcus maripaludis (2)
	Escherichia coli 5-366-08_S1_C3 (1)

More...

Taxonomy

	Bacteria (58)
	Archaea (2)

Experimental Method

	X-RAY DIFFRACTION (55)
	ELECTRON MICROSCOPY (3)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (60)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (19)
	2.0 - 2.5 (27)
	2.5 - 3.0 (5)
	4.0 - 4.5 (2)
	> 4.5 (1)

Release Date

	1995 - 1999 (4)
	2000 - 2004 (4)
	2005 - 2009 (19)
	2010 - 2014 (21)
	2015 - 2019 (8)
	2020 - 2024 (4)

Enzyme Classification Name

	Hydrolases (9)
	Transferases (2)
	Lyases (1)

Symmetry Type

	Asymmetric (57)
	Cyclic (6)
	Octahedral (2)
	Tetrahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (54)
	Artifacts (6)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 25 of 60 Structures

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1E6K \| pdb_00001e6k	Download File View File

Two-component signal transduction system D12A mutant of CheY

Sola, M., Lopez-Hernandez, E., Cronet, P., Lacroix, E., Serrano, L., Coll, M., Parraga, A.

(2000) J Mol Biology 303: 213-225

Released	2001-03-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	Chemotaxis protein CheY (protein)

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1E6L \| pdb_00001e6l	Download File View File

Two-component signal transduction system D13A mutant of CheY

Sola, M., Lopez-Hernandez, E., Cronet, P., Lacroix, E., Serrano, L., Coll, M., Parraga, A.

(2000) J Mol Biology 303: 213-225

Released	2001-03-05
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	Chemotaxis protein CheY (protein)

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1TMY \| pdb_00001tmy	Download File View File

CHEY FROM THERMOTOGA MARITIMA (APO-I)

Usher, K.C., De La Cruz, A., Dahlquist, F.W., Remington, S.J.

(1998) Protein Sci 7: 403-412

Released	1997-11-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermotoga maritima
Macromolecule	CHEY PROTEIN (protein)

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1U0S \| pdb_00001u0s	Download File View File

Chemotaxis kinase CheA P2 domain in complex with response regulator CheY from the thermophile thermotoga maritima

Park, S.Y., Beel, B.D., Simon, M.I., Bilwes, A.M., Crane, B.R.

(2004) Proc Natl Acad Sci U S A 101: 11646-11651

Released	2004-08-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermotoga maritima
Macromolecule	Chemotaxis protein cheA (protein) Chemotaxis protein cheY (protein)

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1U8T \| pdb_00001u8t	Download File View File

Crystal structure of CheY D13K Y106W alone and in complex with a FliM peptide

Dyer, C.M., Quillin, M.L., Campos, A., Lu, J., McEvoy, M.M., Hausrath, A.C., Westbrook, E.M., Matsumura, P., Matthews, B.W., Dahlquist, F.W.

(2004) J Mol Biology 342: 1325-1335

Released	2004-10-05
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Escherichia coli Escherichia coli (strain K12)
Macromolecule	Chemotaxis protein cheY (protein) Flagellar motor switch protein fliM (protein)
Unique Ligands	SO4

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1ZDM \| pdb_00001zdm	Download File View File

Crystal Structure of Activated CheY Bound to Xe

Lowery, T.J., Doucleff, M., Ruiz, E.J., Rubin, S.M., Pines, A., Wemmer, D.E.

(2005) Protein Sci 14: 848-855

Released	2005-04-26
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	Chemotaxis protein cheY (protein)
Unique Ligands	MN, XE

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2B1J \| pdb_00002b1j	Download File View File

Crystal Structure of Unphosphorylated CheY Bound to the N-Terminus of FliM

Dyer, C.M., Dahlquist, F.W.

(2006) J Bacteriol 188: 7354-7363

Released	2006-09-26
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli Escherichia coli (strain K12)
Macromolecule	Chemotaxis protein cheY (protein) Flagellar motor switch protein fliM (protein)
Unique Ligands	MG

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2FKA \| pdb_00002fka	Download File View File

Crystal structure of Mg(2+) and BeF(3)(-)-bound CheY in complex with CheZ(200-214) solved from a F432 crystal grown in CAPS (pH 10.5)

Guhaniyogi, J., Robinson, V.L., Stock, A.M.

(2006) J Mol Biology 359: 624-645

Released	2006-05-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Macromolecule	C-terminal 15-mer from Chemotaxis protein cheZ (protein) Chemotaxis protein cheY (protein)
Unique Ligands	BEF, CXS, MG, SO4

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2FLK \| pdb_00002flk	Download File View File

Crystal structure of CheY in complex with CheZ(200-214) solved from a F432 crystal grown in CAPS (pH 10.5)

Guhaniyogi, J., Robinson, V.L., Stock, A.M.

(2006) J Mol Biology 359: 624-645

Released	2006-05-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Macromolecule	C-terminal 15-mer from Chemotaxis protein cheZ (protein) Chemotaxis protein cheY (protein)
Unique Ligands	CXS, SO4

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2FLW \| pdb_00002flw	Download File View File

Crystal structure of Mg2+ and BeF3- ound CheY in complex with CheZ 200-214 solved from a F432 crystal grown in Hepes (pH 7.5)

Guhaniyogi, J., Robinson, V.L., Stock, A.M.

(2006) J Mol Biology 359: 624-645

Released	2006-05-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Macromolecule	C-terminal 15-mer from Chemotaxis protein cheZ (protein) Chemotaxis protein cheY (protein)
Unique Ligands	BEF, MG, SO4

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2FMF \| pdb_00002fmf	Download File View File

Crystal structure of CheY in complex with CheZ 200-214 solved from a F432 crystal grown in Hepes (pH 7.5)

Guhaniyogi, J., Robinson, V.L., Stock, A.M.

(2006) J Mol Biology 359: 624-645

Released	2006-05-23
Method	X-RAY DIFFRACTION 1.998 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Macromolecule	C-terminal 15-mer from Chemotaxis protein cheZ (protein) Chemotaxis protein cheY (protein)
Unique Ligands	SO4

Explore in 3D

2FMH \| pdb_00002fmh	Download File View File

Crystal structure of Mg2+ and BeF3- bound CheY in complex with CheZ 200-214 solved from a F432 crystal grown in Tris (pH 8.4)

Guhaniyogi, J., Robinson, V.L., Stock, A.M.

(2006) J Mol Biology 359: 624-645

Released	2006-05-23
Method	X-RAY DIFFRACTION 2.001 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Macromolecule	C-terminal 15-mer from Chemotaxis protein cheZ (protein) Chemotaxis protein cheY (protein)
Unique Ligands	BEF, GOL, MG, SO4, TRS

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2FMI \| pdb_00002fmi	Download File View File

Crystal structure of CheY in complex with CheZ 200-214 solved from a F432 crystal grown in Tris (pH 8.4)

Guhaniyogi, J., Robinson, V.L., Stock, A.M.

(2006) J Mol Biology 359: 624-645

Released	2006-05-23
Method	X-RAY DIFFRACTION 2.302 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Macromolecule	C-terminal 15-mer from Chemotaxis protein cheZ (protein) Chemotaxis protein cheY (protein)
Unique Ligands	GOL, SO4, TRS

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2FMK \| pdb_00002fmk	Download File View File

Crystal structure of Mg2+ and BeF3- bound CheY in complex with CheZ 200-214 solved from a P2(1)2(1)2 crystal grown in MES (pH 6.0)

Guhaniyogi, J., Robinson, V.L., Stock, A.M.

(2006) J Mol Biology 359: 624-645

Released	2006-05-23
Method	X-RAY DIFFRACTION 1.999 Å
Organisms	Salmonella choleraesuis (strain SC-B67) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	C-terminal 15-mer from Chemotaxis protein cheZ (protein) Chemotaxis protein cheY (protein)
Unique Ligands	BEF, MG

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2ID7 \| pdb_00002id7	Download File View File

1.75 A Structure of T87I Phosphono-CheY

Halkides, C.J., Haas, R.M., McAdams, K.A., Casper, E.S., Santarsiero, B.D., Mesecar, A.D.

(2008) Arch Biochem Biophys 479: 105-113

Released	2007-09-25
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Escherichia coli
Macromolecule	Chemotaxis protein cheY (protein)

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2ID9 \| pdb_00002id9	Download File View File

1.85 A Structure of T87I/Y106W Phosphono-CheY

Halkides, C.J., Haas, R.M., McAdams, K.A., Casper, E.S., Santarsiero, B.D., Mesecar, A.D.

(2008) Arch Biochem Biophys 479: 105-113

Released	2007-09-25
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Escherichia coli
Macromolecule	Chemotaxis protein cheY (protein)

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2IDM \| pdb_00002idm	Download File View File

2.00 A Structure of T87I/Y106W Phosphono-CheY

Halkides, C.J., Haas, R.M., McAdams, K.A., Casper, E.S., Santarsiero, B.D., Mesecar, A.D.

(2008) Arch Biochem Biophys 479: 105-113

Released	2007-09-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	Chemotaxis protein cheY (protein)
Unique Ligands	ACT

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2LLE \| pdb_00002lle	Download File View File

Computational design of an eight-stranded (beta/alpha)-barrel from fragments of different folds

Coles, M., Truffault, V., Eisenbeis, S., Proffitt, W., Meiler, J., Hocker, B.

(2012) J Am Chem Soc 134: 4019-4022

Released	2012-03-21
Method	SOLUTION NMR
Organisms	Thermotoga maritima
Macromolecule	Chemotaxis protein CheY, Imidazole glycerol phosphate synthase subunit HisF chimera (protein)

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2LP4 \| pdb_00002lp4	Download File View File

Solution structure of P1-CheY/P2 complex in bacterial chemotaxis

Dahlquist, F., Mo, G., Zhou, H., Kamamura, T.

(2012) Biochemistry 51: 3786-3798

Released	2012-10-24
Method	SOLUTION NMR
Organisms	Escherichia coli K-12
Macromolecule	Chemotaxis protein CheA (protein) Chemotaxis protein CheY (protein)

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2PL9 \| pdb_00002pl9	Download File View File

Crystal Structure of CheY-Mg(2+)-BeF(3)(-) in Complex with CheZ(C19) Peptide solved from a P2(1)2(1)2 Crystal

Guhaniyogi, J., Stock, A.M.

(2008) J Bacteriol 190: 1419-1428

Released	2008-01-15
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Macromolecule	Chemotaxis protein cheY (protein) Chemotaxis protein cheZ (protein)
Unique Ligands	BEF, MES, MG

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2PMC \| pdb_00002pmc	Download File View File

Crystal Structure of CheY-Mg(2+) in Complex with CheZ(C15) Peptide solved from a P1 Crystal

Guhaniyogi, J., Stock, A.M.

(2008) J Bacteriol 190: 1419-1428

Released	2008-01-15
Method	X-RAY DIFFRACTION 2.688 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Macromolecule	Chemotaxis protein cheY (protein) Chemotaxis protein cheZ (protein)
Unique Ligands	MG

Explore in 3D

2TMY \| pdb_00002tmy	Download File View File

CHEY FROM THERMOTOGA MARITIMA (APO-II)

Usher, K.C., De La Cruz, A., Dahlquist, F.W., Remington, S.J.

(1998) Protein Sci 7: 403-412

Released	1997-12-03
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermotoga maritima
Macromolecule	CHEY PROTEIN (protein)

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3F7N \| pdb_00003f7n	Download File View File

Crystal Structure of CheY triple mutant F14E, N59M, E89L complexed with BeF3- and Mn2+

Pazy, Y., Collins, E.J., Bourret, R.B.

(2009) J Mol Biology 392: 1205-1220

Released	2009-09-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli K-12
Macromolecule	Chemotaxis protein cheY (protein)
Unique Ligands	BEF, GOL, MN, SO4

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3FFT \| pdb_00003fft	Download File View File

Crystal Structure of CheY double mutant F14E, E89R complexed with BeF3- and Mn2+

Pazy, Y., Collins, E.J., Bourret, R.B.

(2009) J Mol Biology 392: 1205-1220

Released	2009-09-22
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Escherichia coli K-12
Macromolecule	Chemotaxis protein cheY (protein)
Unique Ligands	BEF, GOL, MN, SO4

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3FFW \| pdb_00003ffw	Download File View File

Crystal Structure of CheY triple mutant F14Q, N59K, E89Y complexed with BeF3- and Mn2+

Pazy, Y., Collins, E.J., Bourret, R.B.

(2009) J Mol Biology 392: 1205-1220

Released	2009-09-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli K-12
Macromolecule	Chemotaxis protein cheY (protein)
Unique Ligands	BEF, GOL, MN, SO4

1 to 25 of 60 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1E6K | pdb_00001e6k

1E6L | pdb_00001e6l

1TMY | pdb_00001tmy

1U0S | pdb_00001u0s

1U8T | pdb_00001u8t

1ZDM | pdb_00001zdm

2B1J | pdb_00002b1j

2FKA | pdb_00002fka

2FLK | pdb_00002flk

2FLW | pdb_00002flw

2FMF | pdb_00002fmf

2FMH | pdb_00002fmh

2FMI | pdb_00002fmi

2FMK | pdb_00002fmk

2ID7 | pdb_00002id7

2ID9 | pdb_00002id9

2IDM | pdb_00002idm

2LLE | pdb_00002lle

2LP4 | pdb_00002lp4

2PL9 | pdb_00002pl9

2PMC | pdb_00002pmc

2TMY | pdb_00002tmy

3F7N | pdb_00003f7n

3FFT | pdb_00003fft

3FFW | pdb_00003ffw