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5OPQ \| pdb_00005opq	Download File View File

A 3,6-anhydro-D-galactosidase produced by Zobellia galactanivorans. This is an exo-lytic enzyme that hydrolyzes terminal 3,6-anhydro-D-galactose from the non-reducing end of carrageenan oligosaccharides.

Ficko-Blean, E., Michel, G., Czjzek, M.

(2017) Nat Commun 8: 1685-1685

Released	2017-11-29
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Zobellia galactanivorans
Macromolecule	3,6-anhydro-D-galactosidase (protein)
Unique Ligands	CL, MPD, TRS

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8RZG \| pdb_00008rzg	Download File View File

ZgGH129 from Zobellia galactanivorans soaked with the product of the reaction ADG (3,6-anhydro-D-galactose).

Roret, T., Czjzek, M., Ficko-Blean, E.

(2024) Angew Chem Int Ed Engl 63: e202411171-e202411171

Released	2024-07-31
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Zobellia galactanivorans
Macromolecule	Conserved hypothetical periplasmic protein (protein)
Unique Ligands	A1H39, CL, EDO, NA, PEG, PGE, TLA

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8RZH \| pdb_00008rzh	Download File View File

ZgGH129 from Zobellia galactanivorans in complex with the inhibitor AD-DGJ (3,6-anhydro-D-1-deoxygalactonojirimycin).

Roret, T., Czjzek, M., Ficko-Blean, E.

(2024) Angew Chem Int Ed Engl 63: e202411171-e202411171

Released	2024-07-31
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Zobellia galactanivorans
Macromolecule	Conserved hypothetical periplasmic protein (protein)
Unique Ligands	16P, A1H38, CL, EDO, NA, TLA

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8RZI \| pdb_00008rzi	Download File View File

ZgGH129 from Zobellia galactanivorans soaked with 1,2-diF-ADG (3,6-Anhydro-2-deoxy-2-fluoro-a-D-galactopyranosyl fluoride) resulting in a trapped glycosyl-enzyme intermediate.

Roret, T., Czjzek, M., Ficko-Blean, E.

(2024) Angew Chem Int Ed Engl 63: e202411171-e202411171

Released	2024-07-31
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Zobellia galactanivorans
Macromolecule	Conserved hypothetical periplasmic protein (protein)
Unique Ligands	A1H37, CL, EDO, NA, PEG, TLA

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8RZJ \| pdb_00008rzj	Download File View File

ZgGH129 from Zobellia galactanivorans in complex with the inhibitor ADG-IF (3,6-anhydro-D-galacto-isofagomine).

Roret, T., Czjzek, M., Ficko-Blean, E.

(2024) Angew Chem Int Ed Engl 63: e202411171-e202411171

Released	2024-07-31
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Zobellia galactanivorans
Macromolecule	Conserved hypothetical periplasmic protein (protein)
Unique Ligands	A1H36, CL, EDO, NA, PEG, PGE, TLA

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8RZK \| pdb_00008rzk	Download File View File

The Michaelis complex of ZgGH129 D486N from Zobellia galactanivorans with neo-b/k-oligo-carrageenan tetrasaccharide (beta-kappa neo-oligo-carrageenan DP4).

Roret, T., Czjzek, M., Ficko-Blean, E.

(2024) Angew Chem Int Ed Engl 63: e202411171-e202411171

Released	2024-07-31
Method	X-RAY DIFFRACTION 2.29 Å
Organisms	Zobellia galactanivorans
Macromolecule	Conserved hypothetical periplasmic protein (protein)
Unique Ligands	CL, EDO, NA, TLA
Unique branched monosaccharides	9RN, G4S, GAL

5OPQ | pdb_00005opq

A 3,6-anhydro-D-galactosidase produced by Zobellia galactanivorans. This is an exo-lytic enzyme that hydrolyzes terminal 3,6-anhydro-D-galactose from the non-reducing end of carrageenan oligosaccharides.

8RZG | pdb_00008rzg

ZgGH129 from Zobellia galactanivorans soaked with the product of the reaction ADG (3,6-anhydro-D-galactose).

8RZH | pdb_00008rzh

ZgGH129 from Zobellia galactanivorans in complex with the inhibitor AD-DGJ (3,6-anhydro-D-1-deoxygalactonojirimycin).

8RZI | pdb_00008rzi

ZgGH129 from Zobellia galactanivorans soaked with 1,2-diF-ADG (3,6-Anhydro-2-deoxy-2-fluoro-a-D-galactopyranosyl fluoride) resulting in a trapped glycosyl-enzyme intermediate.

8RZJ | pdb_00008rzj

ZgGH129 from Zobellia galactanivorans in complex with the inhibitor ADG-IF (3,6-anhydro-D-galacto-isofagomine).

8RZK | pdb_00008rzk

The Michaelis complex of ZgGH129 D486N from Zobellia galactanivorans with neo-b/k-oligo-carrageenan tetrasaccharide (beta-kappa neo-oligo-carrageenan DP4).

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5OPQ | pdb_00005opq

A 3,6-anhydro-D-galactosidase produced by Zobellia galactanivorans. This is an exo-lytic enzyme that hydrolyzes terminal 3,6-anhydro-D-galactose from the non-reducing end of carrageenan oligosaccharides.

8RZG | pdb_00008rzg

ZgGH129 from Zobellia galactanivorans soaked with the product of the reaction ADG (3,6-anhydro-D-galactose).

8RZH | pdb_00008rzh

ZgGH129 from Zobellia galactanivorans in complex with the inhibitor AD-DGJ (3,6-anhydro-D-1-deoxygalactonojirimycin).

8RZI | pdb_00008rzi

ZgGH129 from Zobellia galactanivorans soaked with 1,2-diF-ADG (3,6-Anhydro-2-deoxy-2-fluoro-a-D-galactopyranosyl fluoride) resulting in a trapped glycosyl-enzyme intermediate.

8RZJ | pdb_00008rzj

ZgGH129 from Zobellia galactanivorans in complex with the inhibitor ADG-IF (3,6-anhydro-D-galacto-isofagomine).

8RZK | pdb_00008rzk

The Michaelis complex of ZgGH129 D486N from Zobellia galactanivorans with neo-b/k-oligo-carrageenan tetrasaccharide (beta-kappa neo-oligo-carrageenan DP4).