RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Source Organism Taxonomy ID (Full Lineage) = "9986"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 103 Polymer Entities.

Refinements

Structure Determination Methodology

experimental (103)

Scientific Name of Source Organism

	Streptomyces venezuelae (79)
	Streptomyces venezuelae ATCC 10712 (24)

Taxonomy

Bacteria (103)

Experimental Method

	X-RAY DIFFRACTION (81)
	ELECTRON MICROSCOPY (22)

Polymer Entity Type

	Protein (97)
	DNA (6)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (23)
	2.0 - 2.5 (30)
	2.5 - 3.0 (14)
	3.0 - 3.5 (28)
	3.5 - 4.0 (2)
	4.0 - 4.5 (3)

Release Date

	2000 - 2004 (11)
	2005 - 2009 (18)
	2010 - 2014 (10)
	2015 - 2019 (21)
	2020 - 2024 (43)

Enzyme Classification Name

	Transferases (36)
	Oxidoreductases (27)
	Lyases (4)
	Hydrolases (1)

Symmetry Type

	Asymmetric (55)
	Cyclic (42)
	Dihedral (6)
	Helical (1)

SCOP Classification

	All alpha proteins (14)
	Alpha and beta proteins (a/b) (18)
	Artifacts (1)

AllSelected

1 to 25 of 103 Polymer Entities

Page 1 of 5

Sort by

Explore in 3D

1GRQ: Entity 1	Download File View File

CHLORAMPHENICOL PHOSPHOTRANSFERASE IN COMPLEX WITH P-AMINO-CHLORAMPHENICOL FROM STREPTOMYCES VENEZUELAE

Izard, T.

(2001) Protein Sci 10: 1508

Released	2002-01-04
Method	X-RAY DIFFRACTION 2.9 Å
Chain ID	A
Organism	Streptomyces venezuelae
Macromolecule	CHLORAMPHENICOL 3-O PHOSPHOTRANSFERASE

Explore in 3D

1GRR: Entity 1	Download File View File

CHLORAMPHENICOL PHOSPHOTRANSFERASE IN COMPLEX WITH 2-Nac-CHLORAMPHENICOL FROM STREPTOMYCES VENEZUELAE

Izard, T.

(2001) Protein Sci 10: 1508

Released	2002-01-04
Method	X-RAY DIFFRACTION 2.9 Å
Chain ID	A
Organism	Streptomyces venezuelae
Macromolecule	CHLORAMPHENICOL 3-O PHOSPHOTRANSFERASE

Explore in 3D

1MN6: Entity 1	Download File View File

Thioesterase Domain from Picromycin Polyketide Synthase, pH 7.6

Tsai, S.-C., Lu, H., Cane, D.E., Khosla, C., Stroud, R.M.

(2002) Biochemistry 41: 12598-12606

Released	2003-02-04
Method	X-RAY DIFFRACTION 2.2 Å
Chain IDs	A, B
Organism	Streptomyces venezuelae
Macromolecule	polyketide synthase IV

Explore in 3D

1MNA: Entity 1	Download File View File

Thioesterase Domain of Picromycin Polyketide Synthase (PICS TE), pH 8.0

Tsai, S.-C., Lu, H., Cane, D.E., Khosla, C., Stroud, R.M.

(2002) Biochemistry 41: 12598-12606

Released	2003-02-04
Method	X-RAY DIFFRACTION 1.8 Å
Chain IDs	A, B
Organism	Streptomyces venezuelae
Macromolecule	polyketide synthase IV

Explore in 3D

1MNQ: Entity 1	Download File View File

Thioesterase Domain of Picromycin Polyketide Synthase (PICS TE), pH 8.4

Tsai, S.-C., Lu, H., Cane, D.E., Khosla, C., Stroud, R.M.

(2002) Biochemistry 41: 12598-12606

Released	2003-02-04
Method	X-RAY DIFFRACTION 2.2 Å
Chain IDs	A, B
Organism	Streptomyces venezuelae
Macromolecule	polyketide synthase IV

Explore in 3D

1QHN: Entity 1	Download File View File

CHLORAMPHENICOL PHOSPHOTRANSFERASE FROM STREPTOMYCES VENEZUELAE

Izard, T.

(2000) EMBO J 19: 2690-2700

Released	2000-06-07
Method	X-RAY DIFFRACTION 2.7 Å
Chain ID	A
Organism	Streptomyces venezuelae
Macromolecule	CHLORAMPHENICOL PHOSPHOTRANSFERASE

Explore in 3D

1QHS: Entity 1	Download File View File

CHLORAMPHENICOL PHOSPHOTRANSFERASE IN COMPLEX WITH CHLORAMPHENICOL FROM STREPTOMYCES VENEZUELAE

Izard, T.

(2000) EMBO J 19: 2690-2700

Released	2000-06-01
Method	X-RAY DIFFRACTION 2.8 Å
Chain ID	A
Organism	Streptomyces venezuelae
Macromolecule	PROTEIN (CHLORAMPHENICOL PHOSPHOTRANSFERASE)

Explore in 3D

1QHX: Entity 1	Download File View File

CHLORAMPHENICOL PHOSPHOTRANSFERASE IN COMPLEX WITH ATP FROM STREPTOMYCES VENEZUELAE

Izard, T.

(2000) EMBO J 19: 2690-2700

Released	2000-06-01
Method	X-RAY DIFFRACTION 2.5 Å
Chain ID	A
Organism	Streptomyces venezuelae
Macromolecule	PROTEIN (CHLORAMPHENICOL PHOSPHOTRANSFERASE)

Explore in 3D

1QHY: Entity 1	Download File View File

CHLORAMPHENICOL PHOSPHOTRANSFERASE FROM STREPTOMYCES VENEZUELAE IN COMPLEX WITH ATPGAMMAS AND CHLORAMPHENICOL

Izard, T.

(2000) EMBO J 19: 2690-2700

Released	2000-06-07
Method	X-RAY DIFFRACTION 2.6 Å
Chain ID	A
Organism	Streptomyces venezuelae
Macromolecule	CHLORAMPHENICOL PHOSPHOTRANSFERASE

Explore in 3D

1R66: Entity 1	Download File View File

Crystal Structure of DesIV (dTDP-glucose 4,6-dehydratase) from Streptomyces venezuelae with NAD and TYD bound

Allard, S.T.M., Cleland, W.W., Holden, H.M.

(2004) J Biological Chem 279: 2211-2220

Released	2004-01-27
Method	X-RAY DIFFRACTION 1.44 Å
Chain ID	A
Organism	Streptomyces venezuelae
Macromolecule	TDP-glucose-4,6-dehydratase

Explore in 3D

1R6D: Entity 1	Download File View File

Crystal Structure of DesIV double mutant (dTDP-glucose 4,6-dehydratase) from Streptomyces venezuelae with NAD and DAU bound

Allard, S.T.M., Cleland, W.W., Holden, H.M.

(2004) J Biological Chem 279: 2211-2220

Released	2004-01-27
Method	X-RAY DIFFRACTION 1.35 Å
Chain ID	A
Organism	Streptomyces venezuelae
Macromolecule	TDP-glucose-4,6-dehydratase

Explore in 3D

2BVJ: Entity 1	Download File View File

Ligand-free structure of cytochrome P450 PikC (CYP107L1)

Sherman, D.H., Li, S., Yermalitskaya, L.V., Kim, Y., Smith, J.A., Waterman, M.R., Podust, L.M.

(2006) J Biological Chem 281: 26289

Released	2006-07-03
Method	X-RAY DIFFRACTION 2.1 Å
Chain IDs	A, B
Organism	Streptomyces venezuelae
Macromolecule	CYTOCHROME P450 MONOOXYGENASE

Explore in 3D

2C6H: Entity 1	Download File View File

Crystal structure of YC-17-bound cytochrome P450 PikC (CYP107L1)

Sherman, D.H., Li, S., Yermalitskaya, L.V., Kim, Y., Smith, J.A., Waterman, M.R., Podust, L.M.

(2006) J Biological Chem 281: 26289

Released	2006-07-03
Method	X-RAY DIFFRACTION 2.35 Å
Chain IDs	A, B
Organism	Streptomyces venezuelae
Macromolecule	CYTOCHROME P450 MONOOXYGENASE

Explore in 3D

2C7X: Entity 1	Download File View File

Crystal structure of narbomycin-bound cytochrome P450 PikC (CYP107L1)

Sherman, D.H., Li, S., Yermalitskaya, L.V., Kim, Y., Smith, J.A., Waterman, M.R., Podust, L.M.

(2006) J Biological Chem 281: 26289

Released	2006-07-03
Method	X-RAY DIFFRACTION 1.75 Å
Chain ID	A
Organism	Streptomyces venezuelae
Macromolecule	CYTOCHROME P450 MONOOXYGENASE

Explore in 3D

2CA0: Entity 1	Download File View File

Crystal structure of YC-17-bound cytochrome P450 PikC (CYP107L1)

Yermalitskaya, L.I., Kim, Y., Sherman, D.H., Waterman, M.R., Podust, L.M.

To be published

Released	2006-12-13
Method	X-RAY DIFFRACTION 2.85 Å
Chain IDs	A, B
Organism	Streptomyces venezuelae
Macromolecule	CYTOCHROME P450 MONOOXYGENASE

Explore in 3D

2CD8: Entity 1	Download File View File

Crystal structure of YC-17-bound cytochrome P450 PikC (CYP107L1)

Yermalitskaya, L.I., Kim, Y., Sherman, D.H., Waterman, M.R., Podust, L.M.

(2006) J Biological Chem 281: 26289

Released	2007-02-20
Method	X-RAY DIFFRACTION 1.7 Å
Chain IDs	A, B
Organism	Streptomyces venezuelae
Macromolecule	CYTOCHROME P450 MONOOXYGENASE

Explore in 3D

2H7X: Entity 1	Download File View File

Pikromycin Thioesterase adduct with reduced triketide affinity label

Giraldes, J.W., Akey, D.L., Kittendorf, J.D., Sherman, D.H., Smith, J.S., Fecik, R.A.

(2006) Nat Chem Biol 2: 531-536

Released	2006-09-19
Method	X-RAY DIFFRACTION 1.85 Å
Chain IDs	A, B
Organism	Streptomyces venezuelae
Macromolecule	Type I polyketide synthase PikAIV

Explore in 3D

2H7Y: Entity 1	Download File View File

Pikromycin Thioesterase with covalent affinity label

Giraldes, J.W., Akey, D.L., Kittendorf, J.D., Sherman, D.H., Smith, J.S., Fecik, R.A.

(2006) Nat Chem Biol 2: 531-536

Released	2006-09-19
Method	X-RAY DIFFRACTION 2.1 Å
Chain IDs	A, B
Organism	Streptomyces venezuelae
Macromolecule	Type I polyketide synthase PikAIV

Explore in 3D

2HFJ: Entity 1	Download File View File

Pikromycin thioesterase with covalent pentaketide affinity label

Akey, D.L., Kittendorf, J.D., Giraldes, J.W., Fecik, R.A., Sherman, D.H., Smith, J.L.

(2006) Nat Chem Biol 2: 537-542

Released	2006-09-19
Method	X-RAY DIFFRACTION 1.95 Å
Chain IDs	A, B
Organism	Streptomyces venezuelae
Macromolecule	Type I polyketide synthase PikAIV

Explore in 3D

2HFK: Entity 1	Download File View File

Pikromycin thioesterase in complex with product 10-deoxymethynolide

Akey, D.L., Kittendorf, J.D., Giraldes, J.W., Fecik, R.A., Sherman, D.H., Smith, J.L.

(2006) Nat Chem Biol 2: 537-542

Released	2006-09-19
Method	X-RAY DIFFRACTION 1.79 Å
Chain IDs	A, B
Organism	Streptomyces venezuelae
Macromolecule	Type I polyketide synthase PikAIV

Explore in 3D

2OGA: Entity 1	Download File View File

X-ray crystal structure of S. venezuelae DesV in complex with ketimine intermediate

Holden, H.M., Burgie, E.S.

(2007) Protein Sci 16: 887-896

Released	2007-05-15
Method	X-RAY DIFFRACTION 2.05 Å
Chain IDs	A, B, C, D
Organism	Streptomyces venezuelae
Macromolecule	Transaminase

Explore in 3D

2OGE: Entity 1	Download File View File

x-ray structure of S. venezuelae DesV in its internal aldimine form

Holden, H.M., Burgie, E.S.

(2007) Protein Sci 16: 887-896

Released	2007-05-15
Method	X-RAY DIFFRACTION 2.05 Å
Chain IDs	A, B, C, D
Organism	Streptomyces venezuelae
Macromolecule	Transaminase

Explore in 3D

2PO3: Entity 1	Download File View File

Crystal Structure Analysis of DesI in the presence of its TDP-sugar product

Burgie, E.S., Holden, H.M.

(2007) Biochemistry 46: 8999-9006

Released	2007-08-14
Method	X-RAY DIFFRACTION 2.1 Å
Chain IDs	A, B
Organism	Streptomyces venezuelae
Macromolecule	4-dehydrase

Explore in 3D

2VZ7: Entity 1	Download File View File

Crystal structure of the YC-17-bound PikC D50N mutant

Li, S., Sherman, D.H., Podust, L.M.

(2009) J Biological Chem 284: 5723

Released	2008-08-12
Method	X-RAY DIFFRACTION 3.2 Å
Chain IDs	A, B
Organism	Streptomyces venezuelae
Macromolecule	CYTOCHROME P450 MONOOXYGENASE

Explore in 3D

2VZM: Entity 1	Download File View File

Crystal structure of the narbomycin-bound PikC D50N mutant

Li, S., Sherman, D.H., Podust, L.M.

(2009) J Biological Chem 284: 5723

Released	2008-08-12
Method	X-RAY DIFFRACTION 1.85 Å
Chain IDs	A, B
Organism	Streptomyces venezuelae
Macromolecule	CYTOCHROME P450 MONOOXYGENASE

1 to 25 of 103 Polymer Entities

Page 1 of 5

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification