RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Source Organism Taxonomy Name (Full Lineage) = "Expression vector pET3-H2A"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 74 Structures.

Refinements

Structure Determination Methodology

experimental (74)

Scientific Name of Source Organism

Fusarium oxysporum (74)

Taxonomy

Eukaryota (74)

Experimental Method

	X-RAY DIFFRACTION (74)
	NEUTRON DIFFRACTION (1)

Polymer Entity Type

Protein (74)

Refinement Resolution (Å)

	0.5 - 1.0 (8)
	1.0 - 1.5 (18)
	1.5 - 2.0 (24)
	2.0 - 2.5 (23)
	2.5 - 3.0 (2)

Release Date

	1995 - 1999 (7)
	2000 - 2004 (27)
	2005 - 2009 (14)
	2010 - 2014 (1)
	2015 - 2019 (11)
	2020 - 2024 (14)

Enzyme Classification Name

	Oxidoreductases (36)
	Hydrolases (28)
	Lyases (5)

Symmetry Type

	Asymmetric (62)
	Dihedral (12)

SCOP Classification

	All alpha proteins (36)
	Multi-domain proteins (alpha and beta) (9)
	All beta proteins (21)
	Alpha and beta proteins (a/b) (4)
	Artifacts (2)

AllSelected

1 to 25 of 74 Structures

Page 1 of 3

Sort by

Explore in 3D

1CL6: Entity 1	Download File View File

CRYSTAL STRUCTURES OF FERRIC-NO COMPLEXES OF FUNGAL NITRIC OXIDE REDUCTASE AND ITS SER286 MUTANTS AT CRYOGENIC TEMPERATURE

Park, S.-Y., Shiro, Y.

(2000) J Biological Chem 275: 4816-4826

Released	2000-03-22
Method	X-RAY DIFFRACTION 1.7 Å
Chain ID	A
Organism	Fusarium oxysporum
Macromolecule	CYTOCHROME P450

Explore in 3D

1CMJ: Entity 1	Download File View File

CRYSTAL STRUCTURES OF FERRIC-NO COMPLEXES OF FUNGAL NITRIC OXIDE REDUCTASE AND THEIR SER286 MUTANTS AT CRYOGENIC TEMPERATURE

Park, S.-Y., Shiro, Y.

(2000) J Biological Chem 275: 4816-4826

Released	2000-03-22
Method	X-RAY DIFFRACTION 1.7 Å
Chain ID	A
Organism	Fusarium oxysporum
Macromolecule	CYTOCHROME P450

Explore in 3D

1CMN: Entity 1	Download File View File

CRYSTAL STRUCTURES OF FERRIC-NO COMPLEXES OF FUNGAL NITRIC OXIDE REDUCTASE AND THEIR SER286 MUTANTS AT CRYOGENIC TEMPERATURE

Park, S.-Y., Shiro, Y.

(2000) J Biological Chem 275: 4816-4826

Released	2000-03-22
Method	X-RAY DIFFRACTION 1.7 Å
Chain ID	A
Organism	Fusarium oxysporum
Macromolecule	CYTOCHROME P450

Explore in 3D

1EHE: Entity 1	Download File View File

CRYSTAL STRUCTURES OF CYTOCHROME P450NOR AND ITS MUTANTS (SER286 VAL, THR) IN THE FERRIC RESTING STATE AT CRYOGENIC TEMPERATURE: A COMPARATIVE ANALYSIS WITH MONOOXYGENASE CYTOCHROME P450S

Shimizu, H., Park, S.

(2000) J Inorg Biochem 81: 191-205

Released	2000-08-21
Method	X-RAY DIFFRACTION 1.7 Å
Chain ID	A
Organism	Fusarium oxysporum
Macromolecule	CYTOCHROME P450NOR

Explore in 3D

1EHF: Entity 1	Download File View File

CRYSTAL STRUCTURES OF CYTOCHROME P450NOR AND ITS MUTANTS (SER286 VAL, THR) IN THE FERRIC RESTING STATE AT CRYOGENIC TEMPERATURE: A COMPARATIVE ANALYSIS WITH MONOOXYGENASE CYTOCHROME P450S

Shimizu, H., Park, S.

(2000) J Inorg Biochem 81: 191-205

Released	2000-08-21
Method	X-RAY DIFFRACTION 1.7 Å
Chain ID	A
Organism	Fusarium oxysporum
Macromolecule	CYTOCHROME P450NOR

Explore in 3D

1EHG: Entity 1	Download File View File

CRYSTAL STRUCTURES OF CYTOCHROME P450NOR AND ITS MUTANTS (SER286 VAL, THR) IN THE FERRIC RESTING STATE AT CRYOGENIC TEMPERATURE: A COMPARATIVE ANALYSIS WITH MONOOXYGENASE CYTOCHROME P450S

Shimizu, H., Park, S.

(2000) J Inorg Biochem 81: 191-205

Released	2000-08-21
Method	X-RAY DIFFRACTION 1.7 Å
Chain ID	A
Organism	Fusarium oxysporum
Macromolecule	CYTOCHROME P450NOR

Explore in 3D

1F24: Entity 1	Download File View File

CRYSTAL STRUCTURE OF NO COMPLEX OF THR243ALA MUTANTS OF CYTOCHROME P450NOR

Shimizu, H., Park, S.-Y.

(2000) J Inorg Biochem 82: 103-111

Released	2000-11-23
Method	X-RAY DIFFRACTION 1.4 Å
Chain ID	A
Organism	Fusarium oxysporum
Macromolecule	NITRIC OXIDE REDUCTASE

Explore in 3D

1F25: Entity 1	Download File View File

CRYSTAL STRUCTURE OF NO COMPLEX OF THR243ASN MUTANTS OF CYTOCHROME P450NOR

Shimizu, H., Park, S.-Y.

(2000) J Inorg Biochem 82: 103-111

Released	2000-11-23
Method	X-RAY DIFFRACTION 1.4 Å
Chain ID	A
Organism	Fusarium oxysporum
Macromolecule	NITRIC OXIDE REDUCTASE

Explore in 3D

1F26: Entity 1	Download File View File

CRYSTAL STRUCTURE OF NO COMPLEX OF THR243VAL MUTANTS OF CYTOCHROME P450NOR

Shimizu, H., Park, S.-Y.

(2000) J Inorg Biochem 82: 103-111

Released	2000-11-23
Method	X-RAY DIFFRACTION 1.4 Å
Chain ID	A
Organism	Fusarium oxysporum
Macromolecule	NITRIC OXIDE REDUCTASE

Explore in 3D

1FN8: Entity 1	Download File View File

FUSARIUM OXYSPORUM TRYPSIN AT ATOMIC RESOLUTION

Rypniewski, W.R., Oestergaard, P., Noerregaard-Madsen, M., Dauter, M., Wilson, K.S.

(2001) Acta Crystallogr D Biol Crystallogr 57: 8-19

Released	2001-02-07
Method	X-RAY DIFFRACTION 0.81 Å
Chain ID	A
Organism	Fusarium oxysporum
Macromolecule	TRYPSIN

Explore in 3D

1FY4: Entity 1	Download File View File

FUSARIUM OXYSPORUM TRYPSIN AT ATOMIC RESOLUTION

Rypniewski, W.R., Oestergaard, P., Noerregaard-Madsen, M., Dauter, M., Wilson, K.S.

(2001) Acta Crystallogr D Biol Crystallogr 57: 8-19

Released	2001-02-07
Method	X-RAY DIFFRACTION 0.81 Å
Chain ID	A
Organism	Fusarium oxysporum
Macromolecule	TRYPSIN

Explore in 3D

1FY5: Entity 1	Download File View File

Fusarium oxysporum trypsin at atomic resolution

Rypniewski, W.R., Oestergaard, P., Noerregaard-Madsen, M., Dauter, M., Wilson, K.S.

(2001) Acta Crystallogr D Biol Crystallogr 57: 8-19

Released	2001-02-07
Method	X-RAY DIFFRACTION 0.81 Å
Chain ID	A
Organism	Fusarium oxysporum
Macromolecule	TRYPSIN

Explore in 3D

1GDN: Entity 1	Download File View File

FUSARIUM OXYSPORUM TRYPSIN AT ATOMIC RESOLUTION

Rypniewski, W.R., Oestergaard, P., Noerregaard-Madsen, M., Dauter, M., Wilson, K.S.

(2001) Acta Crystallogr D Biol Crystallogr 57: 8-19

Released	2001-02-07
Method	X-RAY DIFFRACTION 0.81 Å
Chain ID	A
Organism	Fusarium oxysporum
Macromolecule	TRYPSIN

Explore in 3D

1GDQ: Entity 1	Download File View File

FUSARIUM OXYSPORUM TRYPSIN AT ATOMIC RESOLUTION

Rypniewski, W.R., Oestergaard, P., Noerregaard-Madsen, M., Dauter, M., Wilson, K.S.

(2001) Acta Crystallogr D Biol Crystallogr 57: 8-19

Released	2001-02-07
Method	X-RAY DIFFRACTION 0.93 Å
Chain ID	A
Organism	Fusarium oxysporum
Macromolecule	TRYPSIN

Explore in 3D

1GDU: Entity 1	Download File View File

FUSARIUM OXYSPORUM TRYPSIN AT ATOMIC RESOLUTION

Rypniewski, W.R., Oestergaard, P., Noerregaard-Madsen, M., Dauter, M., Wilson, K.S.

(2001) Acta Crystallogr D Biol Crystallogr 57: 8-19

Released	2001-02-07
Method	X-RAY DIFFRACTION 1.07 Å
Chain ID	A
Organism	Fusarium oxysporum
Macromolecule	TRYPSIN

Explore in 3D

1GED: Entity 1	Download File View File

A positive charge route for the access of nadh to heme formed in the distal heme pocket of cytochrome p450nor

Kudo, T., Takaya, N., Park, S.-Y., Shiro, Y., Shoun, H.

(2001) J Biological Chem 276: 5020-5026

Released	2000-11-22
Method	X-RAY DIFFRACTION 2 Å
Chain ID	A
Organism	Fusarium oxysporum
Macromolecule	CYTOCHROME P450 55A1

Explore in 3D

1GEI: Entity 1	Download File View File

STRUCTURAL CHARACTERIZATION OF N-BUTYL-ISOCYANIDE COMPLEXES OF CYTOCHROMES P450NOR AND P450CAM

Lee, D.-S., Park, S.-Y., Yamane, K., Shiro, Y.

(2001) Biochemistry 40: 2669-2677

Released	2000-11-29
Method	X-RAY DIFFRACTION 1.6 Å
Chain ID	A
Organism	Fusarium oxysporum
Macromolecule	CYTOCHROME P450 55A1

Explore in 3D

1GEJ: Entity 1	Download File View File

STRUCTURAL CHARACTERIZATION OF N-BUTYL-ISOCYANIDE COMPLEXES OF CYTOCHROMES P450NOR AND P450CAM

lee, D.-S., Park, S.-Y., Yamane, K., Shiro, Y.

(2001) Biochemistry 40: 2669-2677

Released	2000-12-06
Method	X-RAY DIFFRACTION 1.5 Å
Chain ID	A
Organism	Fusarium oxysporum
Macromolecule	CYTOCHROME P450 55A1

Explore in 3D

1JFB: Entity 1	Download File View File

X-ray structure of nitric oxide reductase (cytochrome P450nor) in the ferric resting state at atomic resolution

Shimizu, H., Adachi, S., Park, S.Y., Shiro, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2002) Acta Crystallogr D Biol Crystallogr 58: 81-89

Released	2001-12-20
Method	X-RAY DIFFRACTION 1 Å
Chain ID	A
Organism	Fusarium oxysporum
Macromolecule	nitric-oxide reductase cytochrome P450 55A1

Explore in 3D

1JFC: Entity 1	Download File View File

X-ray structure of nitric oxide reductase (cytochrome P450nor) in the ferrous CO state at atomic resolution

Shimizu, H., Adachi, S., Park, S.Y., Shiro, Y., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2002) Acta Crystallogr D Biol Crystallogr 58: 81-89

Released	2001-12-20
Method	X-RAY DIFFRACTION 1.05 Å
Chain ID	A
Organism	Fusarium oxysporum
Macromolecule	nitric-oxide reductase Cytochrome P450 55A1

Explore in 3D

1OVW: Entity 1	Download File View File

ENDOGLUCANASE I COMPLEXED WITH NON-HYDROLYSABLE SUBSTRATE ANALOGUE

Sulzenbacher, G., Davies, G.J., Schulein, M.

(1996) Biochemistry 35: 15280-15287

Released	1997-10-29
Method	X-RAY DIFFRACTION 2.7 Å
Chain IDs	A, B, C, D
Organism	Fusarium oxysporum
Macromolecule	ENDOGLUCANASE I

Explore in 3D

1PPZ: Entity 1	Download File View File

Trypsin complexes at atomic and ultra-high resolution

Schmidt, A., Jelsch, C., Rypniewski, W., Lamzin, V.S.

(2003) J Biological Chem 278: 43357-43362

Released	2003-11-11
Method	X-RAY DIFFRACTION 1.23 Å
Chain ID	A
Organism	Fusarium oxysporum
Macromolecule	Trypsin

Explore in 3D

1PQ5: Entity 1	Download File View File

Trypsin at pH 5, 0.85 A

Schmidt, A., Jelsch, C., Rypniewski, W., Lamzin, V.S.

(2003) J Biological Chem 278: 43357-43362

Released	2003-11-11
Method	X-RAY DIFFRACTION 0.85 Å
Chain ID	A
Organism	Fusarium oxysporum
Macromolecule	Trypsin

Explore in 3D

1PQ7: Entity 1	Download File View File

Trypsin at 0.8 A, pH5 / borax

Schmidt, A., Jelsch, C., Rypniewski, W., Lamzin, V.S.

(2003) J Biological Chem 278: 43357-43362

Released	2003-11-11
Method	X-RAY DIFFRACTION 0.8 Å
Chain ID	A
Organism	Fusarium oxysporum
Macromolecule	Trypsin

Explore in 3D

1PQ8: Entity 1	Download File View File

Trypsin at pH 4 at atomic resolution

Schmidt, A., Jelsch, C., Rypniewski, W., Lamzin, V.S.

(2003) J Biological Chem 278: 43357-43362

Released	2003-11-11
Method	X-RAY DIFFRACTION 1 Å
Chain ID	A
Organism	Fusarium oxysporum
Macromolecule	Trypsin

1 to 25 of 74 Structures

Page 1 of 3

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification