RCSB PDB: Search

3BRS \| pdb_00003brs	Download File View File

Crystal structure of sugar transporter from Clostridium phytofermentans

Malashkevich, V.N., Patskovsky, Y., Toro, R., Meyers, A.J., Wasserman, S., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2008-02-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Lachnoclostridium phytofermentans ISDg
Macromolecule	Periplasmic binding protein/LacI transcriptional regulator (protein)

Explore in 3D

3BT3 \| pdb_00003bt3	Download File View File

Crystal structure of a glyoxalase-related enzyme from Clostridium phytofermentans

Rao, K.N., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2008-03-18
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Lachnoclostridium phytofermentans ISDg
Macromolecule	Glyoxalase-related enzyme, AraC type (protein)

Explore in 3D

3CU5 \| pdb_00003cu5	Download File View File

Crystal structure of a two component transcriptional regulator AraC from Clostridium phytofermentans ISDg

Malashkevich, V.N., Toro, R., Wasserman, S.R., Meyer, A., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2008-05-06
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Lachnoclostridium phytofermentans ISDg
Macromolecule	Two component transcriptional regulator, AraC family (protein)

Explore in 3D

4WZZ \| pdb_00004wzz	Download File View File

CRYSTAL STRUCTURE OF AN ABC TRANSPORTER SOLUTE BINDING PROTEIN (IPR025997) FROM CLOSTRIDIUM PHYTOFERMENTAS (Cphy_0583, TARGET EFI-511148) WITH BOUND L-RHAMNOSE

Vetting, M.W., Al Obaidi, N.F., Toro, R., Morisco, L.L., Benach, J., Wasserman, S.R., Attonito, J.D., Scott Glenn, A., Chamala, S., Chowdhury, S., Lafleur, J., Love, J., Seidel, R.D., Whalen, K.L., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2014-12-17
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Lachnoclostridium phytofermentans ISDg
Macromolecule	Putative sugar ABC transporter, substrate-binding protein (protein)
Unique Ligands	EDO, RAM

Explore in 3D

4YS6 \| pdb_00004ys6	Download File View File

CRYSTAL STRUCTURE OF AN ABC TRANSPORTER SOLUTE BINDING PROTEIN (IPR025997) FROM CLOSTRIDIUM PHYTOFERMENTANS (Cphy_1585, TARGET EFI-511156) WITH BOUND BETA-D-GLUCOSE

Vetting, M.W., Patskovsky, Y., Al Obaidi, N.F., Toro, R., Morisco, L.L., Benach, J., Koss, J., Wasserman, S.R., Attonito, J.D., Scott Glenn, A., Chamala, S., Chowdhury, S., Lafleur, J., Love, J., Seidel, R.D., Whalen, K.L., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2015-04-08
Method	X-RAY DIFFRACTION 1.698 Å
Organisms	Lachnoclostridium phytofermentans ISDg
Macromolecule	Putative solute-binding component of ABC transporter (protein)
Unique Ligands	BGC, CL, NA

Explore in 3D

5DBV \| pdb_00005dbv	Download File View File

Structure of a C269A mutant of propionaldehyde dehydrogenase from the Clostridium phytofermentans fucose utilisation bacterial microcompartment

Tuck, L.R., Altenbach, K., Ang, T.F., Crawshaw, A.D., Campopiano, D.J., Clarke, D.J., Marles-Wright, J.

(2016) Sci Rep 6: 22108-22108

Released	2016-03-16
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Lachnoclostridium phytofermentans ISDg
Macromolecule	Aldehyde Dehydrogenase (protein)
Unique Ligands	ACT, COA, SO4

Explore in 3D

5H3Z \| pdb_00005h3z	Download File View File

Crystal Structure of 1,2-beta-oligoglucan phosphorylase from Lachnoclostridium phytofermentans

Nakajima, M., Tanaka, N., Furukawa, N., Nihira, T., Kodutsumi, Y., Takahashi, Y., Sugimoto, N., Miyanaga, A., Fushinobu, S., Taguchi, H., Nakai, H.

(2017) Sci Rep 7: 42671-42671

Released	2017-03-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Lachnoclostridium phytofermentans ISDg
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	CA, GOL, PEG

Explore in 3D

5H40 \| pdb_00005h40	Download File View File

Crystal Structure of 1,2-beta-oligoglucan phosphorylase from Lachnoclostridium phytofermentans in complex with sophorose

Nakajima, M., Tanaka, N., Furukawa, N., Nihira, T., Kodutsumi, Y., Takahashi, Y., Sugimoto, N., Miyanaga, A., Fushinobu, S., Taguchi, H., Nakai, H.

(2017) Sci Rep 7: 42671-42671

Released	2017-03-01
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Lachnoclostridium phytofermentans ISDg
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	CA, GOL
Unique branched monosaccharides	BGC

Explore in 3D

5H41 \| pdb_00005h41	Download File View File

Crystal Structure of 1,2-beta-oligoglucan phosphorylase from Lachnoclostridium phytofermentans in complex with sophorose, isofagomine, sulfate ion

Nakajima, M., Tanaka, N., Furukawa, N., Nihira, T., Kodutsumi, Y., Takahashi, Y., Sugimoto, N., Miyanaga, A., Fushinobu, S., Taguchi, H., Nakai, H.

(2017) Sci Rep 7: 42671-42671

Released	2017-03-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Lachnoclostridium phytofermentans ISDg
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	IFM, SO4
Unique branched monosaccharides	BGC, GLC

Explore in 3D

5H42 \| pdb_00005h42	Download File View File

Crystal Structure of 1,2-beta-oligoglucan phosphorylase from Lachnoclostridium phytofermentans in complex with alpha-d-glucose-1-phosphate

Nakajima, M., Tanaka, N., Furukawa, N., Nihira, T., Kodutsumi, Y., Takahashi, Y., Sugimoto, N., Miyanaga, A., Fushinobu, S., Taguchi, H., Nakai, H.

(2017) Sci Rep 7: 42671-42671

Released	2017-03-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Lachnoclostridium phytofermentans ISDg
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	G1P, GLC

Explore in 3D

8X8H \| pdb_00008x8h	Download File View File

A carbohydrate binding domain of a putative pectate lyase

Liu, G.C., Chang, Y.G.

To be published

Released	2024-12-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Lachnoclostridium phytofermentans ISDg
Macromolecule	Pectate disaccharide-lyase (protein)

3BRS | pdb_00003brs

Crystal structure of sugar transporter from Clostridium phytofermentans

3BT3 | pdb_00003bt3

Crystal structure of a glyoxalase-related enzyme from Clostridium phytofermentans

3CU5 | pdb_00003cu5

Crystal structure of a two component transcriptional regulator AraC from Clostridium phytofermentans ISDg

4WZZ | pdb_00004wzz

CRYSTAL STRUCTURE OF AN ABC TRANSPORTER SOLUTE BINDING PROTEIN (IPR025997) FROM CLOSTRIDIUM PHYTOFERMENTAS (Cphy_0583, TARGET EFI-511148) WITH BOUND L-RHAMNOSE

4YS6 | pdb_00004ys6

CRYSTAL STRUCTURE OF AN ABC TRANSPORTER SOLUTE BINDING PROTEIN (IPR025997) FROM CLOSTRIDIUM PHYTOFERMENTANS (Cphy_1585, TARGET EFI-511156) WITH BOUND BETA-D-GLUCOSE

5DBV | pdb_00005dbv

Structure of a C269A mutant of propionaldehyde dehydrogenase from the Clostridium phytofermentans fucose utilisation bacterial microcompartment

5H3Z | pdb_00005h3z

Crystal Structure of 1,2-beta-oligoglucan phosphorylase from Lachnoclostridium phytofermentans

5H40 | pdb_00005h40

Crystal Structure of 1,2-beta-oligoglucan phosphorylase from Lachnoclostridium phytofermentans in complex with sophorose

5H41 | pdb_00005h41

Crystal Structure of 1,2-beta-oligoglucan phosphorylase from Lachnoclostridium phytofermentans in complex with sophorose, isofagomine, sulfate ion

5H42 | pdb_00005h42

Crystal Structure of 1,2-beta-oligoglucan phosphorylase from Lachnoclostridium phytofermentans in complex with alpha-d-glucose-1-phosphate

8X8H | pdb_00008x8h

A carbohydrate binding domain of a putative pectate lyase

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3BRS | pdb_00003brs

3BT3 | pdb_00003bt3

3CU5 | pdb_00003cu5

4WZZ | pdb_00004wzz

4YS6 | pdb_00004ys6

5DBV | pdb_00005dbv

5H3Z | pdb_00005h3z

5H40 | pdb_00005h40

5H41 | pdb_00005h41

5H42 | pdb_00005h42

8X8H | pdb_00008x8h