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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Rhodospirillum rubrum"

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Search Summary

This query matches 79 Structures.

Refinements

Structure Determination Methodology

experimental (79)

Scientific Name of Source Organism

	Rhodospirillum rubrum (46)
	Rhodospirillum rubrum ATCC 11170 (32)
	Escherichia coli K-12 (2)
	Rhodospirillum rubrum F11 (2)
	Rhodopseudomonas palustris (1)

Taxonomy

Bacteria (79)

Experimental Method

	X-RAY DIFFRACTION (68)
	SOLUTION NMR (6)
	ELECTRON MICROSCOPY (5)

Polymer Entity Type

Protein (79)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (21)
	2.0 - 2.5 (22)
	2.5 - 3.0 (17)
	3.0 - 3.5 (5)
	4.0 - 4.5 (1)
	> 4.5 (1)

Release Date

	1980 - 1984 (2)
	1990 - 1994 (5)
	2000 - 2004 (11)
	2005 - 2009 (27)
	2010 - 2014 (6)
	2015 - 2019 (8)
	2020 - 2024 (18)
	2025 - 2029 (2)

Enzyme Classification Name

	Oxidoreductases (28)
	Translocases (18)
	Hydrolases (14)
	Lyases (8)
	Transferases (3)
	Isomerases (2)

Membrane Protein Annotation

	PDBTM (5)
	MemProtMD (4)
	OPM (3)
	mpstruc (1)

Symmetry Type

	Cyclic (29)
	Asymmetric (33)
	Dihedral (20)

SCOP Classification

	All alpha proteins (14)
	Alpha and beta proteins (a/b) (26)
	Artifacts (13)
	Alpha and beta proteins (a+b) (8)
	Multi-domain proteins (alpha and beta) (1)
	All beta proteins (1)
	Membrane and cell surface proteins and peptides (2)

AllSelected

1 to 25 of 79 Structures

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1E3T \| pdb_00001e3t	Download File View File

Solution Structure of the NADP(H) binding Component (dIII) of Proton-Translocating Transhydrogenase from Rhodospirillum rubrum

Jeeves, M., Smith, K.J., Quirk, P.G., Cotton, N.P.J., Jackson, J.B.

(2000) Biochim Biophys Acta 1459: 248

Released	2000-10-03
Method	SOLUTION NMR
Organisms	Rhodospirillum rubrum
Macromolecule	NICOTINAMIDE NUCLEOTIDE TRANSHYDROGENASE (SUBUNIT BETA) (protein)
Unique Ligands	NAP

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1F8G \| pdb_00001f8g	Download File View File

THE X-RAY STRUCTURE OF NICOTINAMIDE NUCLEOTIDE TRANSHYDROGENASE FROM RHODOSPIRILLUM RUBRUM COMPLEXED WITH NAD+

Buckley, P.A., Baz Jackson, J., Schneider, T., White, S.A., Rice, D.W., Baker, P.J.

(2000) Structure 8: 809-815

Released	2001-06-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Rhodospirillum rubrum
Macromolecule	NICOTINAMIDE NUCLEOTIDE TRANSHYDROGENASE (protein)
Unique Ligands	NAD

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1FT9 \| pdb_00001ft9	Download File View File

STRUCTURE OF THE REDUCED (FEII) CO-SENSING PROTEIN FROM R. RUBRUM

Lanzilotta, W.N., Schuller, D.J., Poulos, T.L., Thorsteinsson, M.V., Kirby, B., Roberts, G.P.

(2000) Nat Struct Biol 7: 876-880

Released	2000-10-09
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Rhodospirillum rubrum
Macromolecule	CARBON MONOXIDE OXIDATION SYSTEM TRANSCRIPTION REGULATOR (protein)
Unique Ligands	HEM

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1HZZ \| pdb_00001hzz	Download File View File

THE ASYMMETRIC COMPLEX OF THE TWO NUCLEOTIDE-BINDING COMPONENTS (DI, DIII) OF PROTON-TRANSLOCATING TRANSHYDROGENASE

Cotton, N.P.J., White, S.A., Peake, S.J., McSweeney, S., Jackson, J.B.

(2001) Structure 9: 165-176

Released	2001-08-29
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Rhodospirillum rubrum
Macromolecule	PROTON-TRANSLOCATING NICOTINAMIDE NUCLEOTIDE TRANSHYDROGENASE SUBUNIT PNTAA (protein) PROTON-TRANSLOCATING NICOTINAMIDE NUCLEOTIDE TRANSHYDROGENASE SUBUNIT PNTB (protein)
Unique Ligands	NAD, NAP

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1JQK \| pdb_00001jqk	Download File View File

Crystal structure of carbon monoxide dehydrogenase from Rhodospirillum rubrum

Drennan, C.L., Heo, J., Sintchak, M.D., Schreiter, E., Ludden, P.W.

(2001) Proc Natl Acad Sci U S A 98: 11973-11978

Released	2001-10-17
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Rhodospirillum rubrum
Macromolecule	carbon monoxide dehydrogenase (protein)
Unique Ligands	FE2, SF4, UNX, WCC

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1L7D \| pdb_00001l7d	Download File View File

Crystal Structure of R. rubrum Transhydrogenase Domain I without Bound NAD(H)

Prasad, G.S., Wahlberg, M., Sridhar, V., Yamaguchi, M., Hatefi, Y., Stout, C.D.

(2002) Biochemistry 41: 12745-12754

Released	2002-11-20
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Rhodospirillum rubrum
Macromolecule	nicotinamide nucleotide Transhydrogenase, subunit alpha 1 (protein)

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1L7E \| pdb_00001l7e	Download File View File

Crystal Structure of R. rubrum Transhydrogenase Domain I with Bound NADH

Prasad, G.S., Wahlberg, M., Sridhar, V., Yamaguchi, M., Hatefi, Y., Stout, C.D.

(2002) Biochemistry 41: 12745-12754

Released	2002-11-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Rhodospirillum rubrum
Macromolecule	nicotinamide nucleotide Transhydrogenase, subunit alpha 1 (protein)
Unique Ligands	NAI

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1NM5 \| pdb_00001nm5	Download File View File

R. rubrum transhydrogenase (dI.Q132N)2(dIII)1 asymmetric complex

Van Boxel, G.I., Quirk, P.G., Cotton, N.P., White, S.A., Jackson, J.B.

(2003) Biochemistry 42: 1217-1226

Released	2004-01-13
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Rhodospirillum rubrum
Macromolecule	NAD(P) transhydrogenase subunit alpha part 1 (protein) NAD(P) transhydrogenase subunit beta (protein)
Unique Ligands	GOL, NAD, NAP

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1PNO \| pdb_00001pno	Download File View File

Crystal structure of R. rubrum transhydrogenase domain III bound to NADP

Sundaresan, V., Yamaguchi, M., Chartron, J., Stout, C.D.

(2003) Biochemistry 42: 12143-12153

Released	2003-11-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Rhodospirillum rubrum
Macromolecule	NAD(P) transhydrogenase subunit beta (protein)
Unique Ligands	NAP

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1PNQ \| pdb_00001pnq	Download File View File

Crystal structure of R. rubrum transhydrogenase domain III bound to NADPH

Sundaresan, V., Yamaguchi, M., Chartron, J., Stout, C.D.

(2003) Biochemistry 42: 12143-12153

Released	2003-11-11
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Rhodospirillum rubrum
Macromolecule	NAD(P) transhydrogenase subunit beta (protein)
Unique Ligands	NDP

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1PTJ \| pdb_00001ptj	Download File View File

Crystal structure analysis of the DI and DIII complex of transhydrogenase with a thio-nicotinamide nucleotide analogue

Singh, A., Venning, J.D., Quirk, P.G., van Boxel, G.I., Rodrigues, D.J., White, S.A., Jackson, J.B.

(2003) J Biological Chem 278: 33208-33216

Released	2003-10-07
Method	X-RAY DIFFRACTION 2.61 Å
Organisms	Rhodospirillum rubrum
Macromolecule	NAD(P) transhydrogenase subunit alpha part 1 (protein) NAD(P) transhydrogenase subunit beta (protein)
Unique Ligands	GOL, NAP, SND

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1RBA \| pdb_00001rba	Download File View File

SUBSTITUTION OF ASP193 TO ASN AT THE ACTIVE SITE OF RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE RESULTS IN CONFORMATIONAL CHANGES

Schneider, G., Soderlind, E.

(1992) Eur J Biochem 206: 729-735

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Rhodospirillum rubrum
Macromolecule	RUBISCO (protein)

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1RUS \| pdb_00001rus	Download File View File

CRYSTAL STRUCTURE OF THE BINARY COMPLEX OF RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE AND ITS PRODUCT, 3-PHOSPHO-D-GLYCERATE

Lundqvist, T., Schneider, G.

(1989) J Biological Chem 264: 3643-3646

Released	1991-10-15
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Rhodospirillum rubrum
Macromolecule	RUBISCO (RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE(SLASH)OXYGENASE) (protein)
Unique Ligands	3PG

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1U28 \| pdb_00001u28	Download File View File

R. rubrum transhydrogenase asymmetric complex (dI.NAD+)2(dIII.NADP+)1

Mather, O.C., Singh, A., van Boxel, G.I., White, S.A., Jackson, J.B.

(2004) Biochemistry 43: 10952-10964

Released	2005-01-18
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Rhodospirillum rubrum
Macromolecule	NAD(P) transhydrogenase subunit alpha part 1 (protein) NAD(P) transhydrogenase subunit beta (protein)
Unique Ligands	GOL, NAD, NAP

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1U2D \| pdb_00001u2d	Download File View File

Structre of transhydrogenaes (dI.NADH)2(dIII.NADPH)1 asymmetric complex

Mather, O.C., Singh, A., van Boxel, G.I., White, S.A., Jackson, J.B.

(2004) Biochemistry 43: 10952-10964

Released	2005-01-25
Method	X-RAY DIFFRACTION 3 Å
Organisms	Rhodospirillum rubrum
Macromolecule	NAD(P) transhydrogenase subunit alpha part 1 (protein) NAD(P) transhydrogenase subunit beta (protein)
Unique Ligands	GOL, NAD, NDP

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1U2G \| pdb_00001u2g	Download File View File

transhydrogenase (dI.ADPr)2(dIII.NADPH)1 asymmetric complex

Mather, O.C., Singh, A., van Boxel, G.I., White, S.A., Jackson, J.B.

(2004) Biochemistry 43: 10952-10964

Released	2005-01-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Rhodospirillum rubrum
Macromolecule	NAD(P) transhydrogenase subunit alpha part 1 (protein) NAD(P) transhydrogenase subunit beta (protein)
Unique Ligands	APR, GOL, NDP

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1WRG \| pdb_00001wrg	Download File View File

Light-Harvesting Complex 1 Beta Subunit from Wild-Type Rhodospirillum rubrum

Wang, Z.-Y., Gokan, K., Kobayashi, M., Nozawa, T.

(2005) J Mol Biology 347: 465-477

Released	2005-03-15
Method	SOLUTION NMR
Organisms	Rhodospirillum rubrum
Macromolecule	Light-harvesting protein B-880, beta chain (protein)

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1XLT \| pdb_00001xlt	Download File View File

Crystal structure of Transhydrogenase [(domain I)2:domain III] heterotrimer complex

Sundaresan, V., Chartron, J., Yamaguchi, M., Stout, C.D.

(2005) J Mol Biology 346: 617-629

Released	2005-04-05
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Rhodospirillum rubrum
Macromolecule	NAD(P) transhydrogenase subunit alpha part 1 (protein) NAD(P) transhydrogenase subunit beta (protein)
Unique Ligands	NA, NAD, NDP
Unique branched monosaccharides	FRU, GLC

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1XRD \| pdb_00001xrd	Download File View File

Light-Harvesting Complex 1 Alfa Subunit from Wild-Type Rhodospirillum rubrum

Wang, Z.-Y., Gokan, K., Kobayashi, M., Nozawa, T.

(2005) J Mol Biology 347: 465-477

Released	2005-03-15
Method	SOLUTION NMR
Organisms	Rhodospirillum rubrum
Macromolecule	Light-harvesting protein B-880, alpha chain (protein)

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2C2C \| pdb_00002c2c	Download File View File

REFINEMENT OF THE CRYSTAL STRUCTURE OF OXIDIZED RHODOSPIRILLUM RUBRUM CYTOCHROME C2

Bhatia, G., Finzel, B.C., Kraut, J.

(1981) Thesis

Released	1984-02-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Rhodospirillum rubrum
Macromolecule	CYTOCHROME C2 (protein)
Unique Ligands	HEC

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2FR8 \| pdb_00002fr8	Download File View File

Structure of transhydrogenase (dI.R127A.NAD+)2(dIII.NADP+)1 asymmetric complex

Brondijk, T.H., van Boxel, G.I., Mather, O.C., Quirk, P.G., White, S.A., Jackson, J.B.

(2006) J Biological Chem 281: 13345-13354

Released	2006-02-28
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Rhodospirillum rubrum
Macromolecule	NAD(P) transhydrogenase subunit alpha part 1 (protein) NAD(P) transhydrogenase subunit beta (protein)
Unique Ligands	NAD, NAP

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2FRD \| pdb_00002frd	Download File View File

Structure of Transhydrogenase (dI.S138A.NADH)2(dIII.NADPH)1 asymmetric complex

Brondijk, T.H., van Boxel, G.I., Mather, O.C., Quirk, P.G., White, S.A., Jackson, J.B.

(2006) J Biological Chem 281: 13345-13354

Released	2006-02-28
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Rhodospirillum rubrum
Macromolecule	NAD(P) transhydrogenase subunit alpha part 1 (protein) NAD(P) transhydrogenase subunit beta (protein)
Unique Ligands	NAI, NDP

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2FSV \| pdb_00002fsv	Download File View File

Structure of transhydrogenase (dI.D135N.NAD+)2(dIII.E155W.NADP+)1 asymmetric complex

Brondijk, T.H., van Boxel, G.I., Mather, O.C., Quirk, P.G., White, S.A., Jackson, J.B.

(2006) J Biological Chem 281: 13345-13354

Released	2006-02-28
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Rhodospirillum rubrum
Macromolecule	NAD(P) transhydrogenase subunit alpha part 1 (protein) NAD(P) transhydrogenase subunit beta (protein)
Unique Ligands	GOL, NAD, NAP

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2K0M \| pdb_00002k0m	Download File View File

Solution NMR structure of the uncharacterized protein from Rhodospirillum rubrum gene locus Rru_A0810. Northeast Structural Genomics Target RrR43

Rossi, P., Wang, H., Jiang, M., Foote, E.L., Xiao, R., Liu, J., Swapna, G., Acton, T.B., Baran, M.C., Rost, B., Montelione, G.T., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2008-02-19
Method	SOLUTION NMR
Organisms	Rhodospirillum rubrum ATCC 11170
Macromolecule	Uncharacterized protein (protein)

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2OO5 \| pdb_00002oo5	Download File View File

Structure of transhydrogenase (dI.H2NADH)2(dIII.NADP+)1 asymmetric complex

Bhakta, T., Jackson, J.B.

(2007) Biochemistry 46: 3304-3318

Released	2007-03-13
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Rhodospirillum rubrum
Macromolecule	NAD(P) transhydrogenase subunit alpha part 1 (protein) NAD(P) transhydrogenase subunit beta (protein)
Unique Ligands	NAP, SO4, TXD

1 to 25 of 79 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1E3T | pdb_00001e3t

1F8G | pdb_00001f8g

1FT9 | pdb_00001ft9

1HZZ | pdb_00001hzz

1JQK | pdb_00001jqk

1L7D | pdb_00001l7d

1L7E | pdb_00001l7e

1NM5 | pdb_00001nm5

1PNO | pdb_00001pno

1PNQ | pdb_00001pnq

1PTJ | pdb_00001ptj

1RBA | pdb_00001rba

1RUS | pdb_00001rus

1U28 | pdb_00001u28

1U2D | pdb_00001u2d

1U2G | pdb_00001u2g

1WRG | pdb_00001wrg

1XLT | pdb_00001xlt

1XRD | pdb_00001xrd

2C2C | pdb_00002c2c

2FR8 | pdb_00002fr8

2FRD | pdb_00002frd

2FSV | pdb_00002fsv

2K0M | pdb_00002k0m

2OO5 | pdb_00002oo5