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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Xanthomonas citri pv. citri str. 306"

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Search Summary

This query matches 81 Structures.

Refinements

Structure Determination Methodology

experimental (81)

Scientific Name of Source Organism

Xanthomonas citri pv. citri str. 306 (81)

Taxonomy

Bacteria (81)

Experimental Method

	X-RAY DIFFRACTION (77)
	SOLUTION NMR (3)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (81)

Refinement Resolution (Å)

	1.0 - 1.5 (19)
	1.5 - 2.0 (35)
	2.0 - 2.5 (15)
	2.5 - 3.0 (6)
	3.0 - 3.5 (3)

Release Date

	2005 - 2009 (5)
	2010 - 2014 (15)
	2015 - 2019 (38)
	2020 - 2024 (23)

Enzyme Classification Name

	Hydrolases (4)
	Ligases (4)
	Isomerases (2)
	Oxidoreductases (1)
	Transferases (1)

Symmetry Type

	Asymmetric (70)
	Cyclic (13)

SCOP Classification

	Alpha and beta proteins (a/b) (17)
	Artifacts (6)
	All beta proteins (1)

AllSelected

1 to 25 of 81 Structures

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2GSN \| pdb_00002gsn	Download File View File

Structure of Xac Nucleotide Pyrophosphatase/Phosphodiesterase

Zalatan, J.G., Fenn, T.D., Brunger, A.T., Herschlag, D.

(2006) Biochemistry 45: 9788-9803

Released	2006-08-01
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	phosphodiesterase-nucleotide pyrophosphatase (protein)
Unique Ligands	ZN

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2GSO \| pdb_00002gso	Download File View File

Structure of Xac Nucleotide Pyrophosphatase/Phosphodiesterase in Complex with Vanadate

Zalatan, J.G., Fenn, T.D., Brunger, A.T., Herschlag, D.

(2006) Biochemistry 45: 9788-9803

Released	2006-08-01
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	phosphodiesterase-nucleotide pyrophosphatase (protein)
Unique Ligands	VO4, ZN

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2GSU \| pdb_00002gsu	Download File View File

Structure of Xac Nucleotide Pyrophosphatase/Phosphodiesterase in Complex with AMP

Zalatan, J.G., Fenn, T.D., Brunger, A.T., Herschlag, D.

(2006) Biochemistry 45: 9788-9803

Released	2006-08-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	phosphodiesterase-nucleotide pyrophosphatase (protein)
Unique Ligands	AMP, ZN

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2H5Y \| pdb_00002h5y	Download File View File

Crystallographic structure of the Molybdate-Binding Protein of Xanthomonas citri at 1.7 Ang resolution bound to molybdate

Balan, A., Santacruz, C.P., Ferreira, L.C.S., Barbosa, J.A.R.G.

(2006) Acta Crystallogr Sect F Struct Biol Cryst Commun 62: 289-291

Released	2007-06-05
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	Molybdate-binding periplasmic protein (protein)
Unique Ligands	MOO, SO4

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2L4W \| pdb_00002l4w	Download File View File

NMR structure of the Xanthomonas VirB7

Souza, D.P., Farah, C.S., Salinas, R.K.

(2011) PLoS Pathog 7: e1002031-e1002031

Released	2011-06-01
Method	SOLUTION NMR
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	Uncharacterized protein (protein)

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2N01 \| pdb_00002n01	Download File View File

NMR structure of VirB9 C-terminal domain in complex with VirB7 N-terminal domain from Xanthomonas citri's T4SS

Oliveira, L.C., Souza, D.P., Salinas, R.K., Wienk, H., Boelens, R., Farah, S.C.

(2016) Structure 24: 1707-1718

Released	2015-09-09
Method	SOLUTION NMR
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	VirB7 protein (protein) VirB9 protein (protein)

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2RH6 \| pdb_00002rh6	Download File View File

Structure of Xac NPP for evaluation of refinement methodology

Zalatan, J.G., Fenn, T.D., Brunger, A.T., Hershlag, D.

To be published

Released	2007-10-30
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	Phosphodiesterase-nucleotide pyrophosphatase (protein)
Unique Ligands	AMP, ZN

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3KSJ \| pdb_00003ksj	Download File View File

The alkanesulfonate-binding protein SsuA from Xabthomonas axonopodis pv. citri bound to MES

Balan, A., Araujo, F.T., Barbosa, J.A.R.G.

To be published

Released	2010-10-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	Nitrate transport protein (protein)
Unique Ligands	MES

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3KSX \| pdb_00003ksx	Download File View File

The alkanesulfonate-binding protein SsuA from Xanthomonas axonopodis pv. citri bound to MOPS

Balan, A., Araujo, F.T., Barbosa, J.A.R.G.

To be published

Released	2010-10-13
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	Nitrate transport protein (protein)
Unique Ligands	MPO, SO4

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3OV5 \| pdb_00003ov5	Download File View File

Atomic structure of the Xanthomonas citri VirB7 globular domain.

Souza, D.P., Farah, C.S.

(2011) PLoS Pathog 7: e1002031-e1002031

Released	2011-06-01
Method	X-RAY DIFFRACTION 1.04 Å
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	IPA

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3UOR \| pdb_00003uor	Download File View File

The structure of the sugar-binding protein MalE from the phytopathogen Xanthomonas citri

Medrano, F.J., Souza, C.S., Balan, A.

(2014) Acta Crystallogr Sect F Struct Biol Cryst Commun 70: 564-571

Released	2011-12-14
Method	X-RAY DIFFRACTION 2.202 Å
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	ABC transporter sugar binding protein (protein)

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4B4D \| pdb_00004b4d	Download File View File

Crystal structure of FAD-containing ferredoxin-NADP reductase from Xanthomonas axonopodis pv. citri

Martinez-Julvez, M., Orellano, E.G., Tondo, M.L., Hurtado-Guerrero, R., Medina, M., Ceccarelli, E.A., Sanchez-Azqueta, A.

(2013) Biomed Res Int 2013: 06572

Released	2013-08-21
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	FERREDOXIN-NADP REDUCTASE (protein)
Unique Ligands	CL, FAD

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4FOJ \| pdb_00004foj	Download File View File

1.55 A Crystal Structure of Xanthomonas citri FimX EAL domain in complex with c-diGMP

Farah, C.S., Guzzo, C.R.

(2013) J Mol Biology 425: 2174-2197

Released	2013-03-27
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	FimX (protein)
Unique Ligands	C2E

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4FOK \| pdb_00004fok	Download File View File

1.8 A Crystal structure of the FimX EAL domain in complex with c-diGMP

Farah, C.S., Guzzo, C.R.

(2013) J Mol Biology 425: 2174-2197

Released	2013-03-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	FimX (protein)
Unique Ligands	C2E, GOL

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4FOU \| pdb_00004fou	Download File View File

Structure of the PilZ-FimX(EAL domain)-c-di-GMP complex responsible for the regulation of bacterial Type IV pilus biogenesis

Farah, C.S., Guzzo, C.R.

(2013) J Mol Biology 425: 2174-2197

Released	2013-03-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	FimX (protein) Type IV fimbriae assembly protein (protein)
Unique Ligands	C2E, CA, GOL

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4PMU \| pdb_00004pmu	Download File View File

Crystal structure of a novel reducing-end xylose-releasing exo-oligoxylanase (XynA) belonging to GH10 family (space group P1211)

Santos, C.R., Martins, V.P.M., Zanphorlin, L.M., Ruller, R., Murakami, M.T.

(2014) J Biological Chem 289: 32186-32200

Released	2014-10-08
Method	X-RAY DIFFRACTION 2.857 Å
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	Endo-1,4-beta-xylanase A (protein)

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4PMV \| pdb_00004pmv	Download File View File

Crystal structure of a novel reducing-end xylose-releasing exo-oligoxylanase (XynA) belonging to GH10 family (space group P43212)

Santos, C.R., Martins, V.P.M., Zanphorlin, L.M., Ruller, R., Murakami, M.T.

(2014) J Biological Chem 289: 32186-32200

Released	2014-10-08
Method	X-RAY DIFFRACTION 3.001 Å
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	Endo-1,4-beta-xylanase A (protein)

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4PMX \| pdb_00004pmx	Download File View File

Crystal structure of GH10 endo-b-1,4-xylanase (XynB) from Xanthomonas axonopodis pv citri in the native form

Santos, C.R., Martins, V.P.M., Zanphorlin, L.M., Ruller, R., Murakami, M.T.

(2014) J Biological Chem 289: 32186-32200

Released	2014-10-08
Method	X-RAY DIFFRACTION 1.304 Å
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	Xylanase (protein)
Unique Ligands	CA

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4PMY \| pdb_00004pmy	Download File View File

Crystal structure of GH10 endo-b-1,4-xylanase (XynB) from Xanthomonas axonopodis pv citri complexed with xylose

Santos, C.R., Martins, V.P.M., Zanphorlin, L.M., Ruller, R., Murakami, M.T.

(2014) J Biological Chem 289: 32186-32200

Released	2014-10-08
Method	X-RAY DIFFRACTION 1.601 Å
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	Xylanase (protein)
Unique Ligands	CA, GOL, XYP

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4PMZ \| pdb_00004pmz	Download File View File

Crystal structure of GH10 endo-b-1,4-xylanase (XynB) from Xanthomonas axonopodis pv citri complexed with xylobiose

Santos, C.R., Martins, V.P.M., Zanphorlin, L.M., Ruller, R., Murakami, M.T.

(2014) J Biological Chem 289: 32186-32200

Released	2014-10-08
Method	X-RAY DIFFRACTION 1.401 Å
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	Xylanase (protein)
Unique Ligands	CA
Unique branched monosaccharides	XYP

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4PN2 \| pdb_00004pn2	Download File View File

Crystal structure of GH10 endo-b-1,4-xylanase (XynB) from Xanthomonas axonopodis pv citri complexed with xylotriose

Santos, C.R., Martins, V.P.M., Zanphorlin, L.M., Ruller, R., Murakami, M.T.

(2014) J Biological Chem 289: 32186-32200

Released	2014-10-08
Method	X-RAY DIFFRACTION 1.42 Å
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	Xylanase (protein)
Unique Ligands	CA, XYP

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4QTQ \| pdb_00004qtq	Download File View File

Structure of a Xanthomonas Type IV Secretion System related protein

Souza, D.P., Guzzo, C.R., Farah, C.S.

(2015) Nat Commun 6: 6453-6453

Released	2015-06-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	XAC2610 protein (protein)
Unique Ligands	CA

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4W7U \| pdb_00004w7u	Download File View File

Crystal structure of XacCel5A in the native form

Paiva, J.H., Murakami, M.T.

To be published

Released	2015-10-21
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	Cellulase (protein)
Unique Ligands	CAC

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4W7V \| pdb_00004w7v	Download File View File

Crystal structure of XacCel5A in complex with cellobiose

Paiva, J.H., Murakami, M.T.

To be published

Released	2015-10-21
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	Cellulase (protein)
Unique branched monosaccharides	BGC

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4W7W \| pdb_00004w7w	Download File View File

High-resolution structure of XacCel5A in complex with cellopentaose

Paiva, J.H., Murakami, M.T.

To be published

Released	2015-10-21
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Xanthomonas citri pv. citri str. 306
Macromolecule	Cellulase (protein)
Unique branched monosaccharides	BGC, GLC

1 to 25 of 81 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2GSN | pdb_00002gsn

2GSO | pdb_00002gso

2GSU | pdb_00002gsu

2H5Y | pdb_00002h5y

2L4W | pdb_00002l4w

2N01 | pdb_00002n01

2RH6 | pdb_00002rh6

3KSJ | pdb_00003ksj

3KSX | pdb_00003ksx

3OV5 | pdb_00003ov5

3UOR | pdb_00003uor

4B4D | pdb_00004b4d

4FOJ | pdb_00004foj

4FOK | pdb_00004fok

4FOU | pdb_00004fou

4PMU | pdb_00004pmu

4PMV | pdb_00004pmv

4PMX | pdb_00004pmx

4PMY | pdb_00004pmy

4PMZ | pdb_00004pmz

4PN2 | pdb_00004pn2

4QTQ | pdb_00004qtq

4W7U | pdb_00004w7u

4W7V | pdb_00004w7v

4W7W | pdb_00004w7w