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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Zymomonas mobilis"

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Search Summary

This query matches 216 Structures.

Refinements

Structure Determination Methodology

experimental (216)

Scientific Name of Source Organism

	Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 (119)
	Zymomonas mobilis (89)
	Zymomonas mobilis subsp. mobilis ATCC 10988 (6)
	Zymomonas mobilis subsp. mobilis (2)
	synthetic construct (2)

Taxonomy

	Bacteria (216)
	other sequences (2)

Experimental Method

X-RAY DIFFRACTION (216)

Polymer Entity Type

	Protein (216)
	RNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (67)
	1.5 - 2.0 (106)
	2.0 - 2.5 (28)
	2.5 - 3.0 (12)
	3.0 - 3.5 (3)

Release Date

	1995 - 1999 (6)
	2000 - 2004 (28)
	2005 - 2009 (30)
	2010 - 2014 (57)
	2015 - 2019 (52)
	2020 - 2024 (43)

Enzyme Classification Name

	Transferases (178)
	Oxidoreductases (14)
	Lyases (11)
	Hydrolases (5)
	Isomerases (1)

Symmetry Type

	Cyclic (186)
	Asymmetric (17)
	Dihedral (16)
	Helical (1)
	Tetrahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (196)
	Alpha and beta proteins (a+b) (12)
	Artifacts (3)
	All alpha proteins (3)
	Multi-domain proteins (alpha and beta) (3)

AllSelected

1 to 25 of 216 Structures

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1EFZ \| pdb_00001efz	Download File View File

MUTAGENESIS AND CRYSTALLOGRAPHIC STUDIES OF ZYMOMONAS MOBILIS TRNA-GUANINE TRANSGLYCOSYLASE TO ELUCIDATE THE ROLE OF SERINE 103 FOR ENZYMATIC ACTIVITY

Gradler, U., Ficner, R., Garcia, G.A., Stubbs, M.T., Klebe, G., Reuter, K.

(1999) FEBS Lett 454: 142-146

Released	2000-03-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Zymomonas mobilis
Macromolecule	TRNA-GUANINE TRANSGLYCOSYLASE (protein)
Unique Ligands	PRF, ZN

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1ENU \| pdb_00001enu	Download File View File

A new target for shigellosis: Rational design and crystallographic studies of inhibitors of tRNA-guanine transglycosylase

Gradler, U., Gerber, H.D., Goodenough-Lashua, D.M., Garcia, G.A., Ficner, R., Reuter, K., Stubbs, M.T., Klebe, G.

(2001) J Mol Biology 306: 455-467

Released	2000-04-19
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Zymomonas mobilis
Macromolecule	TRNA-GUANINE TRANSGLYCOSYLASE (protein)
Unique Ligands	APZ, ZN

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1EVJ \| pdb_00001evj	Download File View File

CRYSTAL STRUCTURE OF GLUCOSE-FRUCTOSE OXIDOREDUCTASE (GFOR) DELTA1-22 S64D

Lott, J.S., Halbig, D., Baker, H.M., Hardman, M.J., Sprenger, G.A., Baker, E.N.

(2000) J Mol Biology 304: 575-584

Released	2000-12-04
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Zymomonas mobilis
Macromolecule	GLUCOSE-FRUCTOSE OXIDOREDUCTASE (protein)
Unique Ligands	NAD

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1F3E \| pdb_00001f3e	Download File View File

A NEW TARGET FOR SHIGELLOSIS: RATIONAL DESIGN AND CRYSTALLOGRAPHIC STUDIES OF INHIBITORS OF TRNA-GUANINE TRANSGLYCOSYLASE

Graedler, U., Gerber, H.-D., Goodenough-Lashua, D.M., Garcia, G.A.G., Ficner, R., Reuter, K., Stubbs, M.T., Klebe, G.

(2001) J Mol Biology 306: 455-467

Released	2000-06-15
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Zymomonas mobilis
Macromolecule	QUEUINE TRNA-RIBOSYLTRANSFERASE (protein)
Unique Ligands	DPZ, ZN

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1H6A \| pdb_00001h6a	Download File View File

Reduced Precursor Form of Glucose-Fructose Oxidoreductase from Zymomonas mobilis

Nurizzo, D., Baker, E.N.

(2001) Biochemistry 40: 13857

Released	2001-11-28
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Zymomonas mobilis
Macromolecule	PRECURSOR FORM OF GLUCOSE-FRUCTOSE OXIDOREDUCTASE (protein)
Unique Ligands	NDP

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1H6B \| pdb_00001h6b	Download File View File

Reduced Precursor Form of Glucose-Fructose Oxidoreductase from Zymomonas mobilis complexed with glycerol

Nurizzo, D., Baker, E.N.

(2001) Biochemistry 40: 13857

Released	2001-11-28
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Zymomonas mobilis
Macromolecule	PRECURSOR FORM OF GLUCOSE-FRUCTOSE OXIDOREDUCTASE (protein)
Unique Ligands	GOL, NDP

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1H6C \| pdb_00001h6c	Download File View File

Oxidized Precursor Form of Glucose-Fructose Oxidoreductase from Zymomonas mobilis complexed with succinate

Nurizzo, D., Baker, E.N.

(2001) Biochemistry 40: 13857

Released	2001-11-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Zymomonas mobilis
Macromolecule	PRECURSOR FORM OF GLUCOSE-FRUCTOSE OXIDOREDUCTASE (protein)
Unique Ligands	GOL, NDP, SIN

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1H6D \| pdb_00001h6d	Download File View File

Oxidized Precursor Form of Glucose-Fructose Oxidoreductase from Zymomonas mobilis complexed with glycerol

Nurizzo, D., Baker, E.N.

(2001) Biochemistry 40: 13857

Released	2001-11-28
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Zymomonas mobilis
Macromolecule	PRECURSOR FORM OF GLUCOSE-FRUCTOSE OXIDOREDUCTASE (protein)
Unique Ligands	GOL, NDP

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1K4G \| pdb_00001k4g	Download File View File

CRYSTAL STRUCTURE OF TRNA-GUANINE TRANSGLYCOSYLASE (TGT) COMPLEXED WITH 2,6-DIAMINO-8-(1H-IMIDAZOL-2-YLSULFANYLMETHYL)-3H-QUINAZOLINE-4-ONE

Brenk, R., Meyer, E.A., Castellano, R.K., Furler, M., Stubbs, M.T., Klebe, G., Diederich, F.

(2002) Chembiochem 3: 250-253

Released	2002-04-24
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Zymomonas mobilis
Macromolecule	TRNA-GUANINE TRANSGLYCOSYLASE (protein)
Unique Ligands	AIQ, ZN

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1K4H \| pdb_00001k4h	Download File View File

CRYSTAL STRUCTURE OF TRNA-GUANINE TRANSGLYCOSYLASE (TGT) COMPLEXED WITH 2,6-Diamino-8-propylsulfanylmethyl-3H-quinazoline-4-one

Brenk, R., Meyer, E.A., Castellano, R.K., Furler, M., Stubbs, M.T., Klebe, G., Diederich, F.

(2002) Chembiochem 3: 250-253

Released	2002-04-24
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Zymomonas mobilis
Macromolecule	TRNA-GUANINE-TRANSGLYCOSYLASE (protein)
Unique Ligands	APQ, ZN

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1N2V \| pdb_00001n2v	Download File View File

Crystal Structure of TGT in complex with 2-Butyl-5,6-dihydro-1H-imidazo[4,5-d]pyridazine-4,7-dione

Brenk, R., Naerum, L., Graedler, U., Gerber, H.-D., Garcia, G.A., Reuter, K., Stubbs, M.T., Klebe, G.

(2003) J Med Chem 46: 1133-1143

Released	2003-04-08
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Zymomonas mobilis
Macromolecule	Queuine tRNA-ribosyltransferase (protein)
Unique Ligands	BDI, ZN

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1OFG \| pdb_00001ofg	Download File View File

GLUCOSE-FRUCTOSE OXIDOREDUCTASE

Kingston, R.L., Scopes, R.K., Baker, E.N.

(1996) Structure 4: 1413-1428

Released	1997-04-21
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Zymomonas mobilis
Macromolecule	GLUCOSE-FRUCTOSE OXIDOREDUCTASE (protein)
Unique Ligands	NDP

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1OZM \| pdb_00001ozm	Download File View File

Y106F mutant of Z. mobilis TGT

Brenk, R., Stubbs, M.T., Heine, A., Reuter, K., Klebe, G.

(2003) Chembiochem 4: 1066-1077

Released	2003-09-30
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Zymomonas mobilis
Macromolecule	Queuine tRNA-ribosyltransferase (protein)
Unique Ligands	ZN

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1OZQ \| pdb_00001ozq	Download File View File

CRYSTAL STRUCTURE OF THE MUTATED TRNA-GUANINE TRANSGLYCOSYLASE (TGT)Y106F COMPLEXED WITH PREQ1

Brenk, R., Stubbs, M.T., Heine, A., Reuter, K., Klebe, G.

(2003) Chembiochem 4: 1066-1077

Released	2003-09-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Zymomonas mobilis
Macromolecule	Queuine tRNA-ribosyltransferase (protein)
Unique Ligands	PRF, ZN

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1P0B \| pdb_00001p0b	Download File View File

Crystal Structure Of tRNA-Guanine Transglycosylase (TGT) From Zymomonas mobilis Complexed With Archaeosine Precursor, Preq0

Brenk, R., Stubbs, M.T., Heine, A., Reuter, K., Klebe, G.

(2003) Chembiochem 4: 1066-1077

Released	2003-09-30
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Zymomonas mobilis
Macromolecule	Queuine tRNA-ribosyltransferase (protein)
Unique Ligands	PQ0, ZN

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1P0D \| pdb_00001p0d	Download File View File

CRYSTAL STRUCTURE OF ZYMOMONAS MOBILIS tRNA-GUANINE TRANSGLYCOSYLASE (TGT) CRYSTALLISED AT PH 5.5

Brenk, R., Stubbs, M.T., Heine, A., Reuter, K., Klebe, G.

(2003) Chembiochem 4: 1066-1077

Released	2003-09-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Zymomonas mobilis
Macromolecule	Queuine tRNA-ribosyltransferase (protein)
Unique Ligands	ZN

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1P0E \| pdb_00001p0e	Download File View File

CRYSTAL STRUCTURE OF ZYMOMONAS MOBILIS tRNA-GUANINE TRANSGLYCOSYLASE (TGT) COCRYSTALLISED WITH PREQ1 AT PH 5.5

Brenk, R., Stubbs, M.T., Heine, A., Reuter, K., Klebe, G.

(2003) Chembiochem 4: 1066-1077

Released	2003-09-30
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Zymomonas mobilis
Macromolecule	Queuine tRNA-ribosyltransferase (protein)
Unique Ligands	PRF, ZN

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1PUD \| pdb_00001pud	Download File View File

TRNA-GUANINE TRANSGLYCOSYLASE

Romier, C., Reuter, K., Suck, D., Ficner, R.

(1996) EMBO J 15: 2850-2857

Released	1997-07-07
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Zymomonas mobilis
Macromolecule	TRNA-GUANINE TRANSGLYCOSYLASE (protein)
Unique Ligands	ZN

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1PXG \| pdb_00001pxg	Download File View File

Crystal structure of the mutated tRNA-guanine transglycosylase (TGT) D280E complexed with preQ1

Kittendorf, J.D., Sgraja, T., Reuter, K., Klebe, G., Garcia, G.A.

(2003) J Biological Chem 278: 42369-42376

Released	2003-09-09
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Zymomonas mobilis
Macromolecule	Queuine tRNA-ribosyltransferase (protein)
Unique Ligands	GOL, PRF, ZN

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1Q2R \| pdb_00001q2r	Download File View File

Chemical trapping and crystal structure of a catalytic tRNA guanine transglycosylase covalent intermediate

Xie, W., Liu, X., Huang, R.H.

(2003) Nat Struct Biol 10: 781-788

Released	2003-09-09
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Zymomonas mobilis synthetic construct
Macromolecule	Queuine tRNA-ribosyltransferase (protein) RNA (5'-R(APGPCPAPCPGPGPCPUP(N)PUPAPAPAPCPCPGPUPGPC)-3') (nucleic acid)
Unique Ligands	9DG, ZN

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1Q2S \| pdb_00001q2s	Download File View File

Chemical trapping and crystal structure of a catalytic tRNA guanine transglycosylase covalent intermediate

Xie, W., Liu, X., Huang, R.H.

(2003) Nat Struct Biol 10: 781-788

Released	2003-09-09
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Zymomonas mobilis synthetic construct
Macromolecule	Queuine tRNA-ribosyltransferase (protein) 5'-R(APGPCPAPCPGPGPCPUP(PQ1)PUPAPAPAPCPCPGPUPGPC)-3' (nucleic acid) RNA (5'-R(APGPCPAPCPGPGPCPUP(N)PUPAPAPAPCPCPGPUPGPC)-3') (nucleic acid)
Unique Ligands	9DG, ZN

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1Q4W \| pdb_00001q4w	Download File View File

CRYSTAL STRUCTURE OF TGT IN COMPLEX WITH 2,6-DIAMINO-3H-QUINAZOLIN-4-ONE

Brenk, R., Meyer, E., Reuter, K., Stubbs, M.T., Garcia, G.A., Klebe, G.

(2004) J Mol Biology 338: 55-75

Released	2004-04-13
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Zymomonas mobilis
Macromolecule	Queuine tRNA-ribosyltransferase (protein)
Unique Ligands	DQU, ZN

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1Q63 \| pdb_00001q63	Download File View File

CRYSTAL STRUCTURE OF TGT IN COMPLEX WITH 2,6-Diamino-8-(1H-imidazol-2-ylsulfanylmethyl)-3H-quinazoline-4-one crystallized at pH 5.5

Brenk, R., Meyer, E., Reuter, K., Stubbs, M.T., Garcia, G.A., Klebe, G.

(2004) J Mol Biology 338: 55-75

Released	2004-04-13
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Zymomonas mobilis
Macromolecule	Queuine tRNA-ribosyltransferase (protein)
Unique Ligands	AIQ, ZN

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1Q65 \| pdb_00001q65	Download File View File

CRYSTAL STRUCTURE OF TGT IN COMPLEX WITH 2,6-DIAMINO-8-(2-dimethylaminoethylsulfanylmethyl)-3H-QUINAZOLIN-4-ONE crystallized at pH 5.5

Brenk, R., Meyer, E., Reuter, K., Stubbs, M.T., Garcia, G.A., Klebe, G.

(2004) J Mol Biology 338: 55-75

Released	2004-04-13
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Zymomonas mobilis
Macromolecule	Queuine tRNA-ribosyltransferase (protein)
Unique Ligands	BHB, ZN

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1Q66 \| pdb_00001q66	Download File View File

CRYSTAL STRUCTURE OF TGT IN COMPLEX WITH 2-AMINO-6-AMINOMETHYL-8-phenylsulfanylmethyl-3H-QUINAZOLIN-4-ONE crystallized at pH 5.5

Brenk, R., Meyer, E., Reuter, K., Stubbs, M.T., Garcia, G.A., Klebe, G.

(2004) J Mol Biology 338: 55-75

Released	2004-04-13
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Zymomonas mobilis
Macromolecule	Queuine tRNA-ribosyltransferase (protein)
Unique Ligands	KMB, ZN

1 to 25 of 216 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1EFZ | pdb_00001efz

1ENU | pdb_00001enu

1EVJ | pdb_00001evj

1F3E | pdb_00001f3e

1H6A | pdb_00001h6a

1H6B | pdb_00001h6b

1H6C | pdb_00001h6c

1H6D | pdb_00001h6d

1K4G | pdb_00001k4g

1K4H | pdb_00001k4h

1N2V | pdb_00001n2v

1OFG | pdb_00001ofg

1OZM | pdb_00001ozm

1OZQ | pdb_00001ozq

1P0B | pdb_00001p0b

1P0D | pdb_00001p0d

1P0E | pdb_00001p0e

1PUD | pdb_00001pud

1PXG | pdb_00001pxg

1Q2R | pdb_00001q2r

1Q2S | pdb_00001q2s

1Q4W | pdb_00001q4w

1Q63 | pdb_00001q63

1Q65 | pdb_00001q65

1Q66 | pdb_00001q66