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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Enzyme Classification Number = 1.3.8

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Search Summary

This query matches 88 Structures.

Refinements

Structure Determination Methodology

experimental (88)

Scientific Name of Source Organism

	Homo sapiens (28)
	Mycolicibacterium smegmatis (15)
	Burkholderia pseudomallei 1710b (6)
	Prodigiosinella confusarubida (5)
	Geobacter metallireducens GS-15 (3)
	Mus musculus (3)
	Mycobacterium tuberculosis H37Rv (3)
	Mycolicibacterium smegmatis MC2 155 (3)
	Sus scrofa (3)
	Caenorhabditis elegans (2)

More...

Taxonomy

	Bacteria (51)
	Eukaryota (37)

Experimental Method

	X-RAY DIFFRACTION (80)
	ELECTRON MICROSCOPY (8)

Polymer Entity Type

Protein (88)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (26)
	2.0 - 2.5 (29)
	2.5 - 3.0 (20)
	3.0 - 3.5 (4)
	3.5 - 4.0 (2)
	4.0 - 4.5 (1)

Release Date

	1990 - 1994 (2)
	1995 - 1999 (5)
	2000 - 2004 (6)
	2005 - 2009 (15)
	2010 - 2014 (7)
	2015 - 2019 (18)
	2020 - 2024 (34)
	2025 - 2029 (1)

Enzyme Classification Name

	Oxidoreductases (88)
	Ligases (4)

Symmetry Type

	Dihedral (56)
	Cyclic (29)
	Asymmetric (5)

SCOP Classification

	All alpha proteins (42)
	Multi-domain proteins (alpha and beta) (42)
	Artifacts (4)
	Alpha and beta proteins (a/b) (4)

AllSelected

1 to 25 of 88 Structures

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1BUC \| pdb_00001buc	Download File View File

THREE-DIMENSIONAL STRUCTURE OF BUTYRYL-COA DEHYDROGENASE FROM MEGASPHAERA ELSDENII

Djordjevic, S., Pace, C.P., Stankovich, M.T., Kim, J.J.P.

(1995) Biochemistry 34: 2163-2171

Released	1995-04-20
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Megasphaera elsdenii
Macromolecule	BUTYRYL-COA DEHYDROGENASE (protein)
Unique Ligands	CAA, FAD

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1EGC \| pdb_00001egc	Download File View File

STRUCTURE OF T255E, E376G MUTANT OF HUMAN MEDIUM CHAIN ACYL-COA DEHYDROGENASE COMPLEXED WITH OCTANOYL-COA

Lee, H.J., Wang, M., Paschke, R., Nandy, A., Ghisla, S., Kim, J.P.

(1996) Biochemistry 35: 12412-12420

Released	1997-11-12
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	MEDIUM CHAIN ACYL-COA DEHYDROGENASE (protein)
Unique Ligands	CO8, FAD

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1EGD \| pdb_00001egd	Download File View File

STRUCTURE OF T255E, E376G MUTANT OF HUMAN MEDIUM CHAIN ACYL-COA DEHYDROGENASE

Lee, H.J., Wang, M., Paschke, R., Nandy, A., Ghisla, S., Kim, J.P.

(1996) Biochemistry 35: 12412-12420

Released	1997-06-16
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	MEDIUM CHAIN ACYL-COA DEHYDROGENASE (protein)
Unique Ligands	FAD

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1EGE \| pdb_00001ege	Download File View File

STRUCTURE OF T255E, E376G MUTANT OF HUMAN MEDIUM CHAIN ACYL-COA DEHYDROGENASE

Lee, H.J., Wang, M., Paschke, R., Nandy, A., Ghisla, S., Kim, J.P.

(1996) Biochemistry 35: 12412-12420

Released	1997-06-16
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Homo sapiens
Macromolecule	MEDIUM CHAIN ACYL-COA DEHYDROGENASE (protein)
Unique Ligands	FAD

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1IVH \| pdb_00001ivh	Download File View File

STRUCTURE OF HUMAN ISOVALERYL-COA DEHYDROGENASE AT 2.6 ANGSTROMS RESOLUTION: STRUCTURAL BASIS FOR SUBSTRATE SPECIFICITY

Tiffany, K.A., Roberts, D.L., Wang, M., Paschke, R., Mohsen, A.-W.A., Vockley, J., Kim, J.J.P.

(1997) Biochemistry 36: 8455-8464

Released	1998-05-20
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	ISOVALERYL-COA DEHYDROGENASE (protein)
Unique Ligands	COS, FAD

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1JQI \| pdb_00001jqi	Download File View File

Crystal Structure of Rat Short Chain Acyl-CoA Dehydrogenase Complexed With Acetoacetyl-CoA

Battaile, K.P., Molin-Case, J., Paschke, R., Wang, M., Bennett, D., Vockley, J., Kim, J.-J.P.

(2002) J Biological Chem 277: 12200-12207

Released	2002-02-13
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Rattus norvegicus
Macromolecule	short chain acyl-CoA dehydrogenase (protein)
Unique Ligands	CAA, FAD

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1RX0 \| pdb_00001rx0	Download File View File

Crystal structure of isobutyryl-CoA dehydrogenase complexed with substrate/ligand.

Battaile, K.P., Nguyen, T.V., Vockley, J., Kim, J.J.

(2004) J Biological Chem 279: 16526-16534

Released	2004-04-20
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Homo sapiens
Macromolecule	Acyl-CoA dehydrogenase family member 8, mitochondrial (protein)
Unique Ligands	2MC, ACY, EDO, FAD

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1SIQ \| pdb_00001siq	Download File View File

The Crystal Structure and Mechanism of Human Glutaryl-CoA Dehydrogenase

Wang, M., Fu, Z., Paschke, R., Goodman, S., Frerman, F.E., Kim, J.J.

(2004) Biochemistry 43: 9674-9684

Released	2004-09-07
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Glutaryl-CoA dehydrogenase (protein)
Unique Ligands	FAD

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1SIR \| pdb_00001sir	Download File View File

The Crystal Structure and Mechanism of Human Glutaryl-CoA Dehydrogenase

Wang, M., Fu, Z., Paschke, R., Goodman, S.L., Frerman, F.E., Kim, J.J.

(2004) Biochemistry 43: 9674-9684

Released	2004-09-07
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Glutaryl-CoA dehydrogenase (protein)
Unique Ligands	FAD, NBC

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1T9G \| pdb_00001t9g	Download File View File

Structure of the human MCAD:ETF complex

Toogood, H.S., van Thiel, A., Basran, J., Sutcliffe, M.J., Scrutton, N.S., Leys, D.

(2004) J Biological Chem 279: 32904-32912

Released	2004-06-08
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Acyl-CoA dehydrogenase, medium-chain specific, mitochondrial (protein) Electron transfer flavoprotein alpha-subunit, mitochondrial (protein) Electron transfer flavoprotein beta-subunit (protein)
Unique Ligands	AMP, FAD

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1UDY \| pdb_00001udy	Download File View File

Medium-Chain Acyl-CoA Dehydrogenase with 3-Thiaoctanoyl-CoA

Satoh, A., Nakajima, Y., Miyahara, I., Hirotsu, K., Tanaka, T., Nishina, Y., Shiga, K., Tamaoki, H., Setoyama, C., Miura, R.

(2003) J Biochem 134: 297-304

Released	2003-12-09
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Sus scrofa
Macromolecule	Acyl-CoA dehydrogenase, medium-chain specific (protein)
Unique Ligands	CS8, FAD

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2A1T \| pdb_00002a1t	Download File View File

Structure of the human MCAD:ETF E165betaA complex

Toogood, H.S., Van Thiel, A., Scrutton, N.S., Leys, D.

(2005) J Biological Chem 280: 30361-30366

Released	2005-07-05
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Acyl-CoA dehydrogenase, medium-chain specific, mitochondrial precursor (protein) Electron transfer flavoprotein alpha-subunit, mitochondrial precursor (protein) Electron transfer flavoprotein beta-subunit (protein)
Unique Ligands	AMP, FAD

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2EBA \| pdb_00002eba	Download File View File

Crystal structure of the putative glutaryl-CoA dehydrogenase from thermus thermophilus

Kumarevel, T.S., Karthe, P., Kuramitsu, S., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-04-01
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Putative glutaryl-CoA dehydrogenase (protein)
Unique Ligands	FAD

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2JIF \| pdb_00002jif	Download File View File

Structure of human short-branched chain acyl-CoA dehydrogenase (ACADSB)

Pike, A.C.W., Hozjan, V., Smee, C., Niesen, F.H., Kavanagh, K.L., Umeano, C., Turnbull, A.P., von Delft, F., Weigelt, J., Edwards, A., Arrowsmith, C.H., Sundstrom, M., Oppermann, U.

To be published

Released	2007-04-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	SHORT/BRANCHED CHAIN SPECIFIC ACYL-COA DEHYDROGENASE (protein)
Unique Ligands	CL, COS, EDO, FAD

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2R0M \| pdb_00002r0m	Download File View File

The effect of a Glu370Asp Mutation in Glutaryl-CoA Dehydrogenase on Proton Transfer to the Dienolate Intermediate

Rao, K.S., Fu, Z., Albro, M., Narayanan, B., Baddam, S., Lee, H.J., Kim, J.J., Frerman, F.E.

(2007) Biochemistry 46: 14468-14477

Released	2008-04-22
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Glutaryl-CoA dehydrogenase (protein)
Unique Ligands	4NI, FAD

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2R0N \| pdb_00002r0n	Download File View File

The effect of a Glu370Asp mutation in Glutaryl-CoA Dehydrogenase on Proton Transfer to the Dienolate Intermediate

Rao, K.S., Albro, M., Fu, Z., Narayanan, B., Baddam, S., Lee, H.J., Kim, J.J., Frerman, F.E.

(2007) Biochemistry 46: 14468-14477

Released	2008-04-22
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Glutaryl-CoA dehydrogenase (protein)
Unique Ligands	FAD, TGC

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2UXW \| pdb_00002uxw	Download File View File

Crystal structure of human very long chain acyl-CoA dehydrogenase (ACADVL)

Pike, A.C.W., Hozjan, V., Smee, C., Berridge, G., Burgess, N., Salah, E., Bunkoczi, G., Uppenberg, J., Ugochukwu, E., von Delft, F., Arrowsmith, C.H., Edwards, A., Weigelt, J., Sundstrom, M., Oppermann, U.

To be published

Released	2007-05-01
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Homo sapiens
Macromolecule	VERY-LONG-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE (protein)
Unique Ligands	EDO, FAD, TH3

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2VIG \| pdb_00002vig	Download File View File

Crystal structure of human short-chain acyl CoA dehydrogenase

Pike, A.C.W., Pantic, N., Parizotto, E., Gileadi, O., Ugochukwu, E., von Delft, F., Weigelt, J., Arrowsmith, C.H., Edwards, A., Oppermann, U.

To be published

Released	2007-12-25
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	SHORT-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, (protein)
Unique Ligands	COS, EDO, FAD

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2WBI \| pdb_00002wbi	Download File View File

Crystal structure of human acyl-CoA dehydrogenase 11

Muniz, J.R.C., Guo, K., Savitsky, P., Roos, A., Yue, W., Pilka, E., von Delft, F., Edwards, A.M., Bountra, C., Arrowsmith, C.H., Weigelt, J., Oppermann, U.

To be published

Released	2009-05-12
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	ACYL-COA DEHYDROGENASE FAMILY MEMBER 11 (protein)
Unique Ligands	FAD, PO4, UNX

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3B96 \| pdb_00003b96	Download File View File

Structural Basis for Substrate Fatty-Acyl Chain Specificity: Crystal Structure of Human Very-Long-Chain Acyl-CoA Dehydrogenase

McAndrew, R.P., Wang, Y., Mohsen, A.W., He, M., Vockley, J., Kim, J.J.

(2008) J Biological Chem 283: 9435-9443

Released	2008-02-12
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Homo sapiens
Macromolecule	Very long-chain specific acyl-CoA dehydrogenase (protein)
Unique Ligands	FAD, MYA

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3D6B \| pdb_00003d6b	Download File View File

2.2 A crystal structure of glutaryl-CoA dehydrogenase from Burkholderia pseudomallei

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2011) Acta Crystallogr Sect F Struct Biol Cryst Commun 67: 1060-1069

Released	2008-06-03
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Glutaryl-CoA dehydrogenase (protein)
Unique Ligands	54D

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3EOM \| pdb_00003eom	Download File View File

2.4 A crystal structure of native glutaryl-coa dehydrogenase from Burkholderia pseudomallei

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2011) Acta Crystallogr Sect F Struct Biol Cryst Commun 67: 1060-1069

Released	2008-10-21
Method	X-RAY DIFFRACTION 2.398 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Glutaryl-CoA dehydrogenase (protein)

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3EON \| pdb_00003eon	Download File View File

2.55A crystal structure of native glutaryl-coa dehydrogenase from Burkholderia pseudomallei in complex with a small molecule

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2011) Acta Crystallogr Sect F Struct Biol Cryst Commun 67: 1060-1069

Released	2008-10-21
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Glutaryl-CoA dehydrogenase (protein)
Unique Ligands	341

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3GNC \| pdb_00003gnc	Download File View File

Crystal structure of Glutaryl-COA dehydrogenase from Burkholderia Pseudomallei with fragment 6421

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2011) Acta Crystallogr Sect F Struct Biol Cryst Commun 67: 1060-1069

Released	2009-07-07
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Glutaryl-CoA dehydrogenase (protein)
Unique Ligands	EPE, QQQ, SO4

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3GQT \| pdb_00003gqt	Download File View File

Crystal structure of glutaryl-CoA dehydrogenase from Burkholderia pseudomallei with fragment (1,4-dimethyl-1,2,3,4-tetrahydroquinoxalin-6-yl)methylamine

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2011) Acta Crystallogr Sect F Struct Biol Cryst Commun 67: 1060-1069

Released	2009-04-28
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Burkholderia pseudomallei 1710b
Macromolecule	Glutaryl-CoA dehydrogenase (protein)
Unique Ligands	UFO

1 to 25 of 88 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1BUC | pdb_00001buc

1EGC | pdb_00001egc

1EGD | pdb_00001egd

1EGE | pdb_00001ege

1IVH | pdb_00001ivh

1JQI | pdb_00001jqi

1RX0 | pdb_00001rx0

1SIQ | pdb_00001siq

1SIR | pdb_00001sir

1T9G | pdb_00001t9g

1UDY | pdb_00001udy

2A1T | pdb_00002a1t

2EBA | pdb_00002eba

2JIF | pdb_00002jif

2R0M | pdb_00002r0m

2R0N | pdb_00002r0n

2UXW | pdb_00002uxw

2VIG | pdb_00002vig

2WBI | pdb_00002wbi

3B96 | pdb_00003b96

3D6B | pdb_00003d6b

3EOM | pdb_00003eom

3EON | pdb_00003eon

3GNC | pdb_00003gnc

3GQT | pdb_00003gqt