RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Enzyme Classification Number = 1.6.5

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 267 Structures.

Refinements

Structure Determination Methodology

experimental (267)

Scientific Name of Source Organism

	Bos taurus (42)
	Homo sapiens (40)
	Escherichia coli (16)
	Saccharomyces cerevisiae S288C (12)
	Yarrowia lipolytica (12)
	Escherichia coli K-12 (11)
	Thermus thermophilus HB8 (11)
	Aquifex aeolicus VF5 (9)
	Pseudomonas aeruginosa PAO1 (8)
	Oryza sativa Japonica Group (5)

More...

Taxonomy

	Bacteria (133)
	Eukaryota (133)
	Archaea (2)

Experimental Method

	X-RAY DIFFRACTION (182)
	ELECTRON MICROSCOPY (84)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (267)

Refinement Resolution (Å)

	1.0 - 1.5 (8)
	1.5 - 2.0 (51)
	2.0 - 2.5 (89)
	2.5 - 3.0 (56)
	3.0 - 3.5 (33)
	3.5 - 4.0 (17)
	4.0 - 4.5 (6)
	> 4.5 (6)

Release Date

	1995 - 1999 (3)
	2000 - 2004 (16)
	2005 - 2009 (34)
	2010 - 2014 (52)
	2015 - 2019 (64)
	2020 - 2024 (89)
	2025 - 2029 (9)

Enzyme Classification Name

	Oxidoreductases (267)
	Translocases (111)
	Transferases (5)
	Hydrolases (3)
	Lyases (2)

Membrane Protein Annotation

	PDBTM (79)
	OPM (58)
	mpstruc (49)
	MemProtMD (19)

Symmetry Type

	Asymmetric (145)
	Cyclic (105)
	Dihedral (32)

SCOP Classification

	Alpha and beta proteins (a/b) (62)
	Artifacts (11)
	Membrane and cell surface proteins and peptides (6)
	All beta proteins (8)
	All alpha proteins (1)
	Alpha and beta proteins (a+b) (1)
	Multi-domain proteins (alpha and beta) (2)

AllSelected

1 to 25 of 267 Structures

Page 1 of 11

Sort by

Explore in 3D

1D4A \| pdb_00001d4a	Download File View File

CRYSTAL STRUCTURE OF HUMAN NAD[P]H-QUINONE OXIDOREDUCTASE AT 1.7 A RESOLUTION

Faig, M., Bianchet, M.A., Chen, S., Winski, S., Ross, D., Amzel, L.M.

(2000) Proc Natl Acad Sci U S A 97: 3177-3182

Released	1999-10-15
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	QUINONE REDUCTASE (protein)
Unique Ligands	FAD

Explore in 3D

1DXO \| pdb_00001dxo	Download File View File

Crystal structure of human NAD[P]H-QUINONE oxidoreductase CO with 2,3,5,6,tetramethyl-P-benzoquinone (duroquinone) at 2.5 Angstrom resolution

Faig, M., Bianchet, M.A., Chen, S., Winski, S., Ross, D., Amzel, L.M.

(2000) Proc Natl Acad Sci U S A 97: 3177

Released	2000-04-23
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	QUINONE REDUCTASE (protein)
Unique Ligands	DQN, FAD

Explore in 3D

1DXQ \| pdb_00001dxq	Download File View File

CRYSTAL STRUCTURE OF MOUSE NAD[P]H-QUINONE OXIDOREDUCTASE

Faig, M., Bianchet, M.A., Chen, S., Winski, S., Ross, D., Amzel, L.M.

(2000) Proc Natl Acad Sci U S A 97: 3177

Released	2000-04-17
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mus musculus
Macromolecule	QUINONE REDUCTASE (protein)
Unique Ligands	FAD

Explore in 3D

1GG5 \| pdb_00001gg5	Download File View File

CRYSTAL STRUCTURE OF A COMPLEX OF HUMAN NAD[P]H-QUINONE OXIDOREDUCTASE AND A CHEMOTHERAPEUTIC DRUG (E09) AT 2.5 A RESOLUTION

Faig, M., Bianchet, M.A., Winski, S., Hargreaves, R., Moody, C.J., Hudnott, A.R., Ross, D., Amzel, L.M.

(2001) Structure 9: 659-667

Released	2001-09-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	NAD(P)H DEHYDROGENASE [QUINONE] 1 (protein)
Unique Ligands	E09, FAD

Explore in 3D

1H66 \| pdb_00001h66	Download File View File

CRYSTAL STRUCTURE OF HUMAN NAD[P]H-QUINONE OXIDOREDUCTASE CO WITH 2,5-diaziridinyl-3-hydroxyl-6-methyl-1,4-benzoquinone

Faig, M., Bianchet, M.A., Winski, S., Ross, D., Amzel, L.M.

(2001) Structure 9: 659

Released	2001-09-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	NAD(P)H DEHYDROGENASE [QUINONE] 1 (protein)
Unique Ligands	FAD, RH1

Explore in 3D

1H69 \| pdb_00001h69	Download File View File

CRYSTAL STRUCTURE OF HUMAN NAD[P]H-QUINONE OXIDOREDUCTASE CO WITH 2,3,5,6,TETRAMETHYL-P-BENZOQUINONE (DUROQUINONE) AT 2.5 ANGSTROM RESOLUTION

Faig, M., Bianchet, M.A., Chen, S., Winski, S., Ross, D., Amzel, L.M.

(2001) Structure 9: 659

Released	2001-09-05
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Homo sapiens
Macromolecule	NAD(P)H DEHYDROGENASE [QUINONE] 1 (protein)
Unique Ligands	ARH, FAD

Explore in 3D

1IYZ \| pdb_00001iyz	Download File View File

Crystal Structures of the Quinone Oxidoreductase from Thermus thermophilus HB8 and Its Complex with NADPH

Shimomura, Y., Kakuta, Y., Fukuyama, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2003) J Bacteriol 185: 4211-4218

Released	2003-07-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Thermus thermophilus
Macromolecule	QUINONE OXIDOREDUCTASE (protein)
Unique Ligands	NDP

Explore in 3D

1IZ0 \| pdb_00001iz0	Download File View File

Crystal Structures of the Quinone Oxidoreductase from Thermus thermophilus HB8 and Its Complex with NADPH

Shimomura, Y., Kakuta, Y., Fukuyama, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2003) J Bacteriol 185: 4211-4218

Released	2003-07-15
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermus thermophilus
Macromolecule	QUINONE OXIDOREDUCTASE (protein)
Unique Ligands	SO4

Explore in 3D

1KBO \| pdb_00001kbo	Download File View File

Complex of Human recombinant NAD(P)H:Quinone Oxide reductase type 1 with 5-methoxy-1,2-dimethyl-3-(phenoxymethyl)indole-4,7-dione (ES1340)

Faig, M., Bianchet, M.A., Amzel, L.M.

(2001) Biochemistry 40: 15135-15142

Released	2002-01-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	NAD(P)H dehydrogenase [quinone] 1 (protein)
Unique Ligands	340, FAD

Explore in 3D

1KBQ \| pdb_00001kbq	Download File View File

Complex of Human NAD(P)H quinone Oxidoreductase with 5-methoxy-1,2-dimethyl-3-(4-nitrophenoxymethyl)indole-4,7-dione (ES936)

Faig, M., Bianchet, M.A., Amzel, L.M.

(2001) Biochemistry 40: 15135-15142

Released	2002-01-16
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	NAD(P)H dehydrogenase [quinone] 1 (protein)
Unique Ligands	936, FAD

Explore in 3D

1QBG \| pdb_00001qbg	Download File View File

CRYSTAL STRUCTURE OF HUMAN DT-DIAPHORASE (NAD(P)H OXIDOREDUCTASE)

Skelly, J.V., Sanderson, M.R., Suter, D.A., Baumann, U., Gregory, D.S., Bennett, M., Hobbs, S.M., Neidle, S.

(1999) J Med Chem 42: 4325-4330

Released	2000-04-24
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	NAD(P)H DEHYDROGENASE [QUINONE] 1 (protein)
Unique Ligands	FAD

Explore in 3D

1QOR \| pdb_00001qor	Download File View File

CRYSTAL STRUCTURE OF ESCHERICHIA COLI QUINONE OXIDOREDUCTASE COMPLEXED WITH NADPH

Thorn, J.M., Barton, J.D., Dixon, N.E., Ollis, D.L., Edwards, K.J.

(1995) J Mol Biology 249: 785-799

Released	1995-06-03
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	QUINONE OXIDOREDUCTASE (protein)
Unique Ligands	NDP, SO4

Explore in 3D

1QRD \| pdb_00001qrd	Download File View File

QUINONE REDUCTASE/FAD/CIBACRON BLUE/DUROQUINONE COMPLEX

Li, R., Bianchet, M.A., Talalay, P., Amzel, L.M.

(1995) Proc Natl Acad Sci U S A 92: 8846-8850

Released	1996-10-14
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Rattus rattus
Macromolecule	QUINONE-REDUCTASE (protein)
Unique Ligands	CBD, DQN, FAD

Explore in 3D

1S3A \| pdb_00001s3a	Download File View File

NMR Solution Structure of Subunit B8 from Human NADH-Ubiquinone Oxidoreductase Complex I (CI-B8)

Brockmann, C., Diehl, A., Rehbein, K., Kuhne, R., Oschkinat, H.

(2004) Structure 12: 1645-1654

Released	2005-01-25
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	NADH-ubiquinone oxidoreductase B8 subunit (protein)

Explore in 3D

1T5B \| pdb_00001t5b	Download File View File

Structural genomics, A protein from Salmonella typhimurium similar to E. coli acyl carrier protein phosphodiesterase

Zhang, R., Wu, R., Collart, F., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2004-08-03
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Acyl carrier protein phosphodiesterase (protein)
Unique Ligands	FMN

Explore in 3D

1TIK \| pdb_00001tik	Download File View File

CRYSTAL STRUCTURE OF ACYL CARRIER PROTEIN PHOSPHODIESTERASE

Rajashankar, K.R., Kniewel, R., Solorzano, V., Lima, C.D., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2004-06-15
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	Acyl carrier protein phosphodiesterase (protein)
Unique Ligands	SO4

Explore in 3D

1TT7 \| pdb_00001tt7	Download File View File

Crystal structure of Bacillus subtilis protein yhfP

Min, T., Gorman, J., Shapiro, L., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2004-12-14
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Bacillus subtilis
Macromolecule	YHFP (protein)

Explore in 3D

1V4B \| pdb_00001v4b	Download File View File

The crystal structure of AzoR (Azo Reductase) from Escherichia coli: Oxidized form

Ito, K., Tanokura, M.

(2006) J Biological Chem 281: 20567-20576

Released	2005-01-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	NADH-azoreductase, FMN-dependent (protein)
Unique Ligands	EDO, FMN, IPA

Explore in 3D

1XDI \| pdb_00001xdi	Download File View File

Crystal structure of LpdA (Rv3303c) from Mycobacterium tuberculosis

Argyrou, A., Vetting, M.W., Blanchard, J.S.

(2004) J Biological Chem 279: 52694-52702

Released	2004-10-19
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Rv3303c-lpdA (protein)
Unique Ligands	FAD

Explore in 3D

1Y9E \| pdb_00001y9e	Download File View File

Crystal structure of Bacillus subtilis protein yhfP with NAD bound

Min, T., Gorman, J., Shapiro, L., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2004-12-21
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Bacillus subtilis
Macromolecule	hypothetical protein yhfP (protein)
Unique Ligands	NAD

Explore in 3D

1YB5 \| pdb_00001yb5	Download File View File

Crystal structure of human Zeta-Crystallin with bound NADP

Debreczeni, J., Berridge, G., Kavanagh, K., Colbrook, S., Bray, J., Williams, L., Oppermann, U., Sundstrom, M., Arrowsmith, C., Edwards, A., Gileadi, O., von Delft, F., Structural Genomics Consortium (SGC)

To be published

Released	2004-12-28
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Quinone oxidoreductase (protein)
Unique Ligands	ACT, CL, GOL, NAP

Explore in 3D

1YDG \| pdb_00001ydg	Download File View File

Crystal Structure of Trp repressor binding protein WrbA

Gorman, J., Shapiro, L., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

(2005) Protein Sci 14: 3004-3012

Released	2005-01-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Deinococcus radiodurans
Macromolecule	trp repressor binding protein WrbA (protein)
Unique Ligands	SO4

Explore in 3D

1YRH \| pdb_00001yrh	Download File View File

Crystal Structure Of Trp Repressor Binding Protein Wrba in complex with FMN

Gorman, J., Shapiro, L., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

(2005) Protein Sci 14: 3004-3012

Released	2005-02-15
Method	X-RAY DIFFRACTION 3.11 Å
Organisms	Deinococcus radiodurans
Macromolecule	trp repressor binding protein WrbA (protein)
Unique Ligands	FMN

Explore in 3D

1ZWK \| pdb_00001zwk	Download File View File

Structure of WrbA from Pseudomonas aeruginosa

Gorman, J., Shapiro, L., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

(2005) Protein Sci 14: 3004-3012

Released	2005-06-14
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Trp repressor binding protein WrbA (protein)
Unique Ligands	PO4

Explore in 3D

1ZWL \| pdb_00001zwl	Download File View File

Structure of WrbA from Pseudomonas aeruginosa in complex with FMN

Gorman, J., Shapiro, L., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

(2005) Protein Sci 14: 3004-3012

Released	2005-06-14
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Trp repressor binding protein WrbA (protein)
Unique Ligands	FMN

1 to 25 of 267 Structures

Page 1 of 11

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1D4A | pdb_00001d4a

1DXO | pdb_00001dxo

1DXQ | pdb_00001dxq

1GG5 | pdb_00001gg5

1H66 | pdb_00001h66

1H69 | pdb_00001h69

1IYZ | pdb_00001iyz

1IZ0 | pdb_00001iz0

1KBO | pdb_00001kbo

1KBQ | pdb_00001kbq

1QBG | pdb_00001qbg

1QOR | pdb_00001qor

1QRD | pdb_00001qrd

1S3A | pdb_00001s3a

1T5B | pdb_00001t5b

1TIK | pdb_00001tik

1TT7 | pdb_00001tt7

1V4B | pdb_00001v4b

1XDI | pdb_00001xdi

1Y9E | pdb_00001y9e

1YB5 | pdb_00001yb5

1YDG | pdb_00001ydg

1YRH | pdb_00001yrh

1ZWK | pdb_00001zwk

1ZWL | pdb_00001zwl