RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Enzyme Classification Number = 3.2.2.6

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 169 Structures.

Refinements

Structure Determination Methodology

experimental (169)

Scientific Name of Source Organism

	Homo sapiens (125)
	Mus musculus (10)
	Arabidopsis thaliana (9)
	Bos taurus (5)
	Vitis rotundifolia (5)
	Drosophila melanogaster (4)
	Lama glama (3)
	Nicotiana benthamiana (3)
	Vicugna pacos (3)
	Acinetobacter baumannii (2)

More...

Taxonomy

	Eukaryota (163)
	Bacteria (7)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (137)
	ELECTRON MICROSCOPY (31)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (169)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (54)
	2.0 - 2.5 (42)
	2.5 - 3.0 (34)
	3.0 - 3.5 (25)
	3.5 - 4.0 (8)
	4.0 - 4.5 (2)
	> 4.5 (2)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (7)
	2005 - 2009 (26)
	2010 - 2014 (29)
	2015 - 2019 (27)
	2020 - 2024 (70)
	2025 - 2029 (8)

Enzyme Classification Name

	Hydrolases (169)
	Transferases (59)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (112)
	Cyclic (57)
	Dihedral (2)
	Helical (2)

SCOP Classification

	Alpha and beta proteins (a/b) (57)
	All beta proteins (16)
	Artifacts (7)
	Designed proteins (1)

AllSelected

1 to 25 of 169 Structures

Page 1 of 7

Sort by

Explore in 3D

1G0Y \| pdb_00001g0y	Download File View File

IL-1 RECEPTOR TYPE 1 COMPLEXED WITH ANTAGONIST PEPTIDE AF10847

Vigers, G.P.A., Dripps, D.J., Edwards, C.K., Brandhuber, B.J.

(2000) J Biological Chem 275: 36927-36933

Released	2000-10-25
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	ANTAGONIST PEPTIDE AF10847 (protein) INTERLEUKIN-1 RECEPTOR, TYPE I (protein)

Explore in 3D

1IRA \| pdb_00001ira	Download File View File

COMPLEX OF THE INTERLEUKIN-1 RECEPTOR WITH THE INTERLEUKIN-1 RECEPTOR ANTAGONIST (IL1RA)

Schreuder, H.A., Tardif, C., Tramp-Kalmeyer, S., Soffientini, A., Sarubbi, E., Akeson, A., Bowlin, T., Yanofsky, S., Barrett, R.W.

(1997) Nature 386: 194-200

Released	1998-06-17
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	INTERLEUKIN-1 RECEPTOR (protein) INTERLEUKIN-1 RECEPTOR ANTAGONIST (protein)
Unique Ligands	NAG

Explore in 3D

1ISF \| pdb_00001isf	Download File View File

Crystal Structure Analysis of BST-1/CD157

Yamamoto-Katayama, S., Ariyoshi, M., Ishihara, K., Hirano, T., Jingami, H., Morikawa, K.

(2002) J Mol Biology 316: 711-723

Released	2002-03-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	bone marrow stromal cell antigen 1 (protein)
Unique Ligands	GOL
Unique branched monosaccharides	NAG

Explore in 3D

1ISG \| pdb_00001isg	Download File View File

Crystal Structure Analysis of BST-1/CD157 with ATPgammaS

Yamamoto-Katayama, S., Ariyoshi, M., Ishihara, K., Hirano, T., Jingami, H., Morikawa, K.

(2002) J Mol Biology 316: 711-723

Released	2002-03-13
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	bone marrow stromal cell antigen 1 (protein)
Unique Ligands	AGS
Unique branched monosaccharides	NAG

Explore in 3D

1ISH \| pdb_00001ish	Download File View File

Crystal Structure Analysis of BST-1/CD157 complexed with ethenoNADP

Yamamoto-Katayama, S., Ariyoshi, M., Ishihara, K., Hirano, T., Jingami, H., Morikawa, K.

(2002) J Mol Biology 316: 711-723

Released	2002-03-13
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	bone marrow stromal cell antigen 1 (protein)
Unique Ligands	ENP
Unique branched monosaccharides	NAG

Explore in 3D

1ISI \| pdb_00001isi	Download File View File

Crystal Structure Analysis of BST-1/CD157 complexed with ethenoNAD

Yamamoto-Katayama, S., Ariyoshi, M., Ishihara, K., Hirano, T., Jingami, H., Morikawa, K.

(2002) J Mol Biology 316: 711-723

Released	2002-03-13
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	bone marrow stromal cell antigen 1 (protein)
Unique Ligands	ENQ, NCA
Unique branched monosaccharides	NAG

Explore in 3D

1ISJ \| pdb_00001isj	Download File View File

Crystal Structure Analysis of BST-1/CD157 complexed with NMN

Yamamoto-Katayama, S., Ariyoshi, M., Ishihara, K., Hirano, T., Jingami, H., Morikawa, K.

(2002) J Mol Biology 316: 711-723

Released	2002-03-13
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	bone marrow stromal cell antigen 1 (protein)
Unique Ligands	NMN
Unique branched monosaccharides	NAG

Explore in 3D

1ISM \| pdb_00001ism	Download File View File

Crystal Structure Analysis of BST-1/CD157 complexed with nicotinamide

Yamamoto-Katayama, S., Ariyoshi, M., Ishihara, K., Hirano, T., Jingami, H., Morikawa, K.

(2002) J Mol Biology 316: 711-723

Released	2002-03-13
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	bone marrow stromal cell antigen 1 (protein)
Unique Ligands	NCA
Unique branched monosaccharides	NAG

Explore in 3D

1ITB \| pdb_00001itb	Download File View File

TYPE-1 INTERLEUKIN-1 RECEPTOR COMPLEXED WITH INTERLEUKIN-1 BETA

Vigers, G.P.A., Anderson, L.J., Caffes, P., Brandhuber, B.J.

(1997) Nature 386: 190-194

Released	1998-02-04
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	INTERLEUKIN-1 BETA (protein) TYPE 1 INTERLEUKIN-1 RECEPTOR (protein)

Explore in 3D

1T3G \| pdb_00001t3g	Download File View File

Crystal structure of the Toll/interleukin-1 receptor (TIR) domain of human IL-1RAPL

Khan, J.A., Tong, L.

(2004) J Biological Chem 279: 31664-31670

Released	2005-02-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	X-linked interleukin-1 receptor accessory protein-like 1 (protein)

Explore in 3D

1YH3 \| pdb_00001yh3	Download File View File

Crystal structure of human CD38 extracellular domain

Liu, Q., Kriksunov, I.A., Graeff, R., Munshi, C., Lee, H.C., Hao, Q.

(2005) Structure 13: 1331-1339

Released	2005-09-27
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosyl cyclase 1 (protein)

Explore in 3D

1ZVM \| pdb_00001zvm	Download File View File

Crystal structure of human CD38: cyclic-ADP-ribosyl synthetase/NAD+ glycohydrolase

Shi, W., Yang, T., Almo, S.C., Schramm, V.L., Sauve, A.

To be published

Released	2006-06-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosyl cyclase 1 (protein)
Unique Ligands	SO4

Explore in 3D

2EF1 \| pdb_00002ef1	Download File View File

Crystal structure of the extracellular domain of human CD38

Kukimoto-Niino, M., Nureki, O., Murayama, K., Shirouzu, M., Katada, T., Hara-Yokoyama, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-02-27
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosyl cyclase 1 (protein)
Unique Ligands	EPE

Explore in 3D

2EG9 \| pdb_00002eg9	Download File View File

Crystal structure of the truncated extracellular domain of mouse CD38

Kukimoto-Niino, M., Mishima, C., Wakiyama, M., Terada, T., Shirouzu, M., Hara-Yokoyama, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-03-11
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mus musculus
Macromolecule	ADP-ribosyl cyclase 1 (protein)

Explore in 3D

2HCT \| pdb_00002hct	Download File View File

Acidic residues at the active sites of CD38 and ADP-ribosyl cyclase determine NAAPD synthesis and hydrolysis activities

Liu, Q., Kriksunov, I.A., Hao, Q., Graeff, R., Lee, H.C.

(2006) J Biological Chem 281: 28951-28957

Released	2006-08-22
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosyl cyclase 1 (protein)
Unique Ligands	NMN

Explore in 3D

2I65 \| pdb_00002i65	Download File View File

Structural Basis for the Mechanistic Understanding Human CD38 Controlled Multiple Catalysis

Liu, Q., Kriksunov, I.A., Graeff, R., Munshi, C., Lee, H.C., Hao, Q.

(2006) J Biological Chem 281: 32861-32869

Released	2006-09-05
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosyl cyclase 1 (protein)
Unique Ligands	NAD

Explore in 3D

2I66 \| pdb_00002i66	Download File View File

Structural Basis for the Mechanistic Understanding Human CD38 Controlled Multiple Catalysis

Liu, Q., Kriksunov, I.A., Graeff, R., Munshi, C., Lee, H.C., Hao, Q.

(2006) J Biological Chem 281: 32861-32869

Released	2006-09-05
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosyl cyclase 1 (protein)
Unique Ligands	G1R, G2R

Explore in 3D

2I67 \| pdb_00002i67	Download File View File

Structural Basis for the Mechanistic Understanding Human CD38 Controlled Multiple Catalysis

Liu, Q., Kriksunov, I.A., Graeff, R., Munshi, C., Lee, H.C., Hao, Q.

(2006) J Biological Chem 281: 32861-32869

Released	2006-09-05
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosyl cyclase 1 (protein)
Unique Ligands	APR

Explore in 3D

2O3Q \| pdb_00002o3q	Download File View File

Structural Basis for Formation and Hydrolysis of Calcium Messenger Cyclic ADP-ribose by Human CD38

Liu, Q., Kriksunov, I.A., Graeff, R., Lee, H.C., Hao, Q.

(2007) J Biological Chem 282: 5853-5861

Released	2006-12-12
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosyl cyclase 1 (protein)
Unique Ligands	CXR

Explore in 3D

2O3R \| pdb_00002o3r	Download File View File

Structural Basis for Formation and Hydrolysis of Calcium Messenger Cyclic ADP-ribose by Human CD38

Liu, Q., Kriksunov, I.A., Graeff, R., Lee, H.C., Hao, Q.

(2007) J Biological Chem 282: 5853-5861

Released	2006-12-12
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosyl cyclase 1 (protein)
Unique Ligands	CXR

Explore in 3D

2O3S \| pdb_00002o3s	Download File View File

Structural Basis for Formation and Hydrolysis of Calcium Messenger Cyclic ADP-ribose by Human CD38

Liu, Q., Kriksunov, I.A., Graeff, R., Lee, H.C., Hao, Q.

(2007) J Biological Chem 282: 5853-5861

Released	2006-12-12
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosyl cyclase 1 (protein)
Unique Ligands	CXR

Explore in 3D

2O3T \| pdb_00002o3t	Download File View File

Structural Basis for Formation and Hydrolysis of Calcium Messenger Cyclic ADP-ribose by Human CD38

Liu, Q., Kriksunov, I.A., Graeff, R., Lee, H.C., Hao, Q.

(2007) J Biological Chem 282: 5853-5861

Released	2006-12-19
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosyl cyclase 1 (protein)
Unique Ligands	CGR

Explore in 3D

2O3U \| pdb_00002o3u	Download File View File

Structural Basis for Formation and Hydrolysis of Calcium Messenger Cyclic ADP-ribose by Human CD38

Liu, Q., Kriksunov, I.A., Graeff, R., Lee, H.C., Hao, Q.

(2007) J Biological Chem 282: 5853-5861

Released	2006-12-19
Method	X-RAY DIFFRACTION 2.11 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosyl cyclase 1 (protein)
Unique Ligands	NGD

Explore in 3D

2PGJ \| pdb_00002pgj	Download File View File

Catalysis associated conformational changes revealed by human cd38 complexed with a non-hydrolyzable substrate analog

Liu, Q., Kriksunov, I.A., Moreau, C., Graeff, R., Potter, B.V.L., Lee, H.C., Hao, Q.

(2007) J Biological Chem 282: 24825-24832

Released	2007-04-24
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosyl cyclase 1 (protein)
Unique Ligands	N1C

Explore in 3D

2PGL \| pdb_00002pgl	Download File View File

Catalysis associated conformational changes revealed by human CD38 complexed with a non-hydrolyzable substrate analog

Liu, Q., Kriksunov, I.A., Moreau, C., Graeff, R., Potter, B.V.L., Lee, H.C., Hao, Q.

(2007) J Biological Chem 282: 24825-24832

Released	2007-04-24
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosyl cyclase 1 (protein)
Unique Ligands	N1C

1 to 25 of 169 Structures

Page 1 of 7

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1G0Y | pdb_00001g0y

1IRA | pdb_00001ira

1ISF | pdb_00001isf

1ISG | pdb_00001isg

1ISH | pdb_00001ish

1ISI | pdb_00001isi

1ISJ | pdb_00001isj

1ISM | pdb_00001ism

1ITB | pdb_00001itb

1T3G | pdb_00001t3g

1YH3 | pdb_00001yh3

1ZVM | pdb_00001zvm

2EF1 | pdb_00002ef1

2EG9 | pdb_00002eg9

2HCT | pdb_00002hct

2I65 | pdb_00002i65

2I66 | pdb_00002i66

2I67 | pdb_00002i67

2O3Q | pdb_00002o3q

2O3R | pdb_00002o3r

2O3S | pdb_00002o3s

2O3T | pdb_00002o3t

2O3U | pdb_00002o3u

2PGJ | pdb_00002pgj

2PGL | pdb_00002pgl