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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: PubMed ID = 15062085

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Search Summary

This query matches 18 Structures.

Refinements

Structure Determination Methodology

experimental (18)

Scientific Name of Source Organism

	Homo sapiens (15)
	Xenopus laevis (2)
	Mus musculus (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (18)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (15)
	ELECTRON MICROSCOPY (3)

Polymer Entity Type

Protein (18)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (10)
	2.0 - 2.5 (1)
	2.5 - 3.0 (1)
	3.0 - 3.5 (3)
	3.5 - 4.0 (2)

Release Date

	2005 - 2009 (7)
	2015 - 2019 (5)
	2020 - 2024 (6)

Membrane Protein Annotation

	PDBTM (2)
	mpstruc (2)
	MemProtMD (1)

Symmetry Type

	Asymmetric (7)
	Cyclic (8)
	Helical (3)
	Dihedral (1)

SCOP Classification

	Artifacts (9)
	All beta proteins (7)
	All alpha proteins (3)
	Alpha and beta proteins (a+b) (3)

AllSelected

1 to 18 of 18 Structures

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2F0A \| pdb_00002f0a	Download File View File

Crystal Structure of Monomeric Uncomplexed form of Xenopus dishevelled PDZ domain

Friedland, N., Hung, L.-W., Cheyette, B., Moon, R.T., Earnest, T.N.

To be published

Released	2005-11-22
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Xenopus laevis
Macromolecule	Segment polarity protein dishevelled homolog DVL-2 (protein)
Unique Ligands	CO, SO4

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2REY \| pdb_00002rey	Download File View File

Crystal structure of the PDZ domain of human dishevelled 2 (homologous to Drosophila dsh)

Papagrigoriou, E., Gileadi, C., Elkins, J., Cooper, C., Ugochukwu, E., Turnbull, A., Pike, A.C.W., Gileadi, O., von Delft, F., Sundstrom, M., Arrowsmith, C.H., Weigelt, J., Edwards, A.M., Doyle, D., Structural Genomics Consortium (SGC)

To be published

Released	2007-10-23
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	Segment polarity protein dishevelled homolog DVL-2 (protein)

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3CBX \| pdb_00003cbx	Download File View File

The Dvl2 PDZ Domain in Complex with the C1 Inhibitory Peptide

Appleton, B.A., Wiesmann, C.

(2009) Nat Chem Biol 5: 217-219

Released	2009-03-03
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Dishevelled-2 (protein)
Unique Ligands	CL, MPD

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3CBY \| pdb_00003cby	Download File View File

The Dvl2 PDZ Domain in Complex with the N1 Inhibitory Peptide

Appleton, B.A., Wiesmann, C.

(2009) Nat Chem Biol 5: 217-219

Released	2009-03-03
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Dishevelled-2 (protein)
Unique Ligands	EDO

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3CBZ \| pdb_00003cbz	Download File View File

The Dvl2 PDZ Domain in Complex with the N2 Inhibitory Peptide

Appleton, B.A., Wiesmann, C.

(2009) Nat Chem Biol 5: 217-219

Released	2009-03-03
Method	X-RAY DIFFRACTION 1.38 Å
Organisms	Homo sapiens
Macromolecule	Dishevelled-2 (protein)
Unique Ligands	EDO, PO4

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3CC0 \| pdb_00003cc0	Download File View File

The Dvl2 PDZ Domain in Complex with the N3 Inhibitory Peptide

Appleton, B.A., Wiesmann, C.

(2009) Nat Chem Biol 5: 217-219

Released	2009-03-03
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Dishevelled-2 (protein)

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3FY5 \| pdb_00003fy5	Download File View File

Dishevelled PDZ domain homodimer

Earnest, T., Friedland, N., Hung, L.-W., Moon, R.

Released	2009-09-08
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Xenopus laevis
Macromolecule	Segment polarity protein dishevelled homolog DVL-2 (protein)

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4WIP \| pdb_00004wip	Download File View File

DIX domain of human Dvl2

Fiedler, M., Bienz, M., Madrzak, J., Chin, J.W.

(2015) Nat Commun 6: 6718-6718

Released	2015-05-13
Method	X-RAY DIFFRACTION 2.691 Å
Organisms	Homo sapiens
Macromolecule	Segment polarity protein dishevelled homolog DVL-2 (protein)
Unique Ligands	1PE

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5LNP \| pdb_00005lnp	Download File View File

Domain-swapped dimer of human Dishevelled2 DEP domain: monoclinic crystal form crystallised from monomeric fraction

Renko, M., Gammons, M.V., Bienz, M.

(2016) Mol Cell 64: 92-104

Released	2016-10-12
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Homo sapiens
Macromolecule	Segment polarity protein dishevelled homolog DVL-2 (protein)
Unique Ligands	SO4

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5SUY \| pdb_00005suy	Download File View File

Domain-swapped dimer of human Dishevelled2 DEP domain: monoclinic crystal form crystallised from dimeric fraction

Renko, M., Gammons, M.V., Bienz, M.

(2016) Mol Cell 64: 92-104

Released	2016-10-12
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Homo sapiens
Macromolecule	Segment polarity protein dishevelled homolog DVL-2 (protein)
Unique Ligands	SO4

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5SUZ \| pdb_00005suz	Download File View File

Domain-swapped dimer of human Dishevelled2 DEP domain: C-centered monoclinic crystal form crystallised from monomeric fraction

Renko, M., Gammons, M.V., Bienz, M.

(2016) Mol Cell 64: 92-104

Released	2016-10-12
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Homo sapiens
Macromolecule	Segment polarity protein dishevelled homolog DVL-2 (protein)

Explore in 3D

6IW3 \| pdb_00006iw3	Download File View File

High resolution structure of Dvl2-DIX Y27W/C80S mutant

Yamanishi, K., Shibata, N.

(2019) Acta Crystallogr F Struct Biol Commun 75: 116-122

Released	2019-02-20
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Homo sapiens
Macromolecule	Segment polarity protein dishevelled homolog DVL-2 (protein)

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6JCK \| pdb_00006jck	Download File View File

Complex structure of Axin-DIX and Dvl2-DIX

Yamanishi, K., Shibata, N.

(2019) Sci Signal 12:

Released	2020-01-15
Method	X-RAY DIFFRACTION 3.09 Å
Organisms	Homo sapiens
Macromolecule	Axin-1 (protein) Segment polarity protein dishevelled homolog DVL-2 (protein)

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6VCC \| pdb_00006vcc	Download File View File

Cryo-EM structure of the Dvl2 DIX filament

Enos, M., Kan, W., Muennich, S., Chen, D.H., Skiniotis, G., Weis, W.I.

(2020) Elife 9:

Released	2020-04-29
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Mus musculus
Macromolecule	Segment polarity protein dishevelled homolog DVL-2 (protein)

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8WM9 \| pdb_00008wm9	Download File View File

Fzd4/DEP complex

He, Y., Qian, Y.

(2024) Nat Commun 15: 7644-7644

Released	2024-09-11
Method	ELECTRON MICROSCOPY 3.53 Å
Organisms	Homo sapiens
Macromolecule	Frizzled-4 (protein) Segment polarity protein dishevelled homolog DVL-2 (protein)
Unique Ligands	Y01

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8WMA \| pdb_00008wma	Download File View File

Fzd4/DEP complex (local refined)

He, Y., Qian, Y.

(2024) Nat Commun 15: 7644-7644

Released	2024-09-11
Method	ELECTRON MICROSCOPY 3.47 Å
Organisms	Homo sapiens
Macromolecule	Frizzled-4 (protein) Segment polarity protein dishevelled homolog DVL-2 (protein)

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8WWR \| pdb_00008wwr	Download File View File

Crystal structure of apo human dishevelled 2 (Dvl2) PDZ domain

Omble, A., Mahajan, S., Kulkarni, K.A.

(2024) Commun Biol 7: 543-543

Released	2024-05-29
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Segment polarity protein dishevelled homolog DVL-2 (protein)

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8YR7 \| pdb_00008yr7	Download File View File

Crystal structure of human dishevelled 2 (Dvl2) PDZ domain fused with WGEF internal peptide motif

Omble, A., Mahajan, S., Kulkarni, K.A.

(2024) Commun Biol 7: 543-543

Released	2024-05-29
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Segment polarity protein dishevelled homolog DVL-2,Rho guanine nucleotide exchange factor 19 (protein)

1 to 18 of 18 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2F0A | pdb_00002f0a

Crystal Structure of Monomeric Uncomplexed form of Xenopus dishevelled PDZ domain

2REY | pdb_00002rey

Crystal structure of the PDZ domain of human dishevelled 2 (homologous to Drosophila dsh)

3CBX | pdb_00003cbx

The Dvl2 PDZ Domain in Complex with the C1 Inhibitory Peptide

3CBY | pdb_00003cby

The Dvl2 PDZ Domain in Complex with the N1 Inhibitory Peptide

3CBZ | pdb_00003cbz

The Dvl2 PDZ Domain in Complex with the N2 Inhibitory Peptide

3CC0 | pdb_00003cc0

The Dvl2 PDZ Domain in Complex with the N3 Inhibitory Peptide

3FY5 | pdb_00003fy5

Dishevelled PDZ domain homodimer

4WIP | pdb_00004wip

DIX domain of human Dvl2

5LNP | pdb_00005lnp

Domain-swapped dimer of human Dishevelled2 DEP domain: monoclinic crystal form crystallised from monomeric fraction

5SUY | pdb_00005suy

Domain-swapped dimer of human Dishevelled2 DEP domain: monoclinic crystal form crystallised from dimeric fraction

5SUZ | pdb_00005suz

Domain-swapped dimer of human Dishevelled2 DEP domain: C-centered monoclinic crystal form crystallised from monomeric fraction

6IW3 | pdb_00006iw3

High resolution structure of Dvl2-DIX Y27W/C80S mutant

6JCK | pdb_00006jck

Complex structure of Axin-DIX and Dvl2-DIX

6VCC | pdb_00006vcc

Cryo-EM structure of the Dvl2 DIX filament

8WM9 | pdb_00008wm9

Fzd4/DEP complex

8WMA | pdb_00008wma

Fzd4/DEP complex (local refined)

8WWR | pdb_00008wwr

Crystal structure of apo human dishevelled 2 (Dvl2) PDZ domain

8YR7 | pdb_00008yr7

Crystal structure of human dishevelled 2 (Dvl2) PDZ domain fused with WGEF internal peptide motif

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2F0A | pdb_00002f0a

2REY | pdb_00002rey

3CBX | pdb_00003cbx

3CBY | pdb_00003cby

3CBZ | pdb_00003cbz

3CC0 | pdb_00003cc0

3FY5 | pdb_00003fy5

4WIP | pdb_00004wip

5LNP | pdb_00005lnp

5SUY | pdb_00005suy

5SUZ | pdb_00005suz

6IW3 | pdb_00006iw3

6JCK | pdb_00006jck

6VCC | pdb_00006vcc

8WM9 | pdb_00008wm9

8WMA | pdb_00008wma

8WWR | pdb_00008wwr

8YR7 | pdb_00008yr7