RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: PubMed ID = 2141998

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 34 Structures.

Refinements

Structure Determination Methodology

experimental (34)

Scientific Name of Source Organism

	Human alphaherpesvirus 1 strain KOS (10)
	Homo sapiens (9)
	Mus musculus (8)
	Human herpesvirus 1 (strain F) (5)
	Suid alphaherpesvirus 1 (4)
	Human alphaherpesvirus 1 (3)
	Human betaherpesvirus 5 (3)
	Human herpesvirus 5 strain Towne (3)
	Human alphaherpesvirus 1 strain F (1)
	Human cytomegalovirus (strain Towne) (1)

More...

Taxonomy

	Duplodnaviria (34)
	Eukaryota (18)

Experimental Method

	X-RAY DIFFRACTION (23)
	ELECTRON MICROSCOPY (11)

Polymer Entity Type

Protein (34)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (7)
	2.5 - 3.0 (8)
	3.0 - 3.5 (12)
	3.5 - 4.0 (3)
	4.0 - 4.5 (1)
	> 4.5 (1)

Release Date

	2000 - 2004 (5)
	2005 - 2009 (2)
	2010 - 2014 (8)
	2015 - 2019 (7)
	2020 - 2024 (11)
	2025 - 2029 (1)

Membrane Protein Annotation

	OPM (2)
	MemProtMD (1)

Symmetry Type

	Cyclic (23)
	Asymmetric (11)

SCOP Classification

	Multi-domain proteins (alpha and beta) (10)
	All beta proteins (6)
	Alpha and beta proteins (a+b) (5)
	Artifacts (1)

AllSelected

1 to 25 of 34 Structures

Page 1 of 2

Sort by

Explore in 3D

1RJZ \| pdb_00001rjz	Download File View File

Mhc Class I Natural Mutant H-2Kbm8 Heavy Chain Complexed With beta-2 Microglobulin and Herpies Simplex Virus Mutant Glycoprotein B Peptide

Miley, M.J., Messaoudi, I., Nikolich-Zugich, J., Fremont, D.H.

(2004) J Exp Medicine 200: 1445-1454

Released	2004-12-14
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Human herpesvirus 1 (strain F) Mus musculus
Macromolecule	Beta-2-microglobulin (protein) Glycoprotein B (protein) H-2 class I histocompatibility antigen, K-B alpha chain (protein)

Explore in 3D

1RK0 \| pdb_00001rk0	Download File View File

Mhc Class I H-2Kb Heavy Chain Complexed With beta-2 Microglobulin and Herpes Simplex Virus Glycoprotein B peptide

Miley, M.J., Messaoudi, I., Nikolich-Zugich, J., Fremont, D.H.

(2004) J Exp Medicine 200: 1445-1454

Released	2004-12-14
Method	X-RAY DIFFRACTION 2.61 Å
Organisms	Human herpesvirus 1 (strain F) Mus musculus
Macromolecule	Beta-2-microglobulin (protein) Glycoprotein B (protein) H-2 class I histocompatibility antigen, K-B alpha chain (protein)
Unique Ligands	NAG

Explore in 3D

1RK1 \| pdb_00001rk1	Download File View File

Mhc Class I Natural H-2Kb Heavy Chain Complexed With beta-2 Microglobulin and Herpes Simplex Virus Mutant Glycoprotein B Peptide

Miley, M.J., Messaoudi, I., Nikolich-Zugich, J., Fremont, D.H.

(2004) J Exp Medicine 200: 1445-1454

Released	2004-12-14
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Human herpesvirus 1 (strain F) Mus musculus
Macromolecule	Beta-2-microglobulin (protein) Glycoprotein B (protein) H-2 class I histocompatibility antigen, K-B alpha chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	FUL, NAG

Explore in 3D

1T0M \| pdb_00001t0m	Download File View File

Conformational switch in polymorphic H-2K molecules containing an HSV peptide

Webb, A.I., Borg, N.A., Dunstone, M.A., Kjer-Nielsen, L., Beddoe, T., McCluskey, J., Carbone, F.R., Bottomley, S.P., Purcell, A.W., Rossjohn, J.

(2004) J Immunol 173: 402-409

Released	2004-11-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human herpesvirus 1 (strain F) Mus musculus
Macromolecule	Beta-2-microglobulin (protein) Glycoprotein B (protein) H-2 class I histocompatibility antigen, K-B alpha chain (protein)

Explore in 3D

1T0N \| pdb_00001t0n	Download File View File

Conformational switch in polymorphic H-2K molecules containing an HSV peptide

Webb, A.I., Borg, N.A., Dunstone, M.A., Kjer-Nielsen, L., Beddoe, T., McCluskey, J., Carbone, F.R., Bottomley, S.P., Purcell, A.W., Rossjohn, J.

(2004) J Immunol 173: 402-409

Released	2004-11-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Human herpesvirus 1 (strain F) Mus musculus
Macromolecule	Beta-2-microglobulin (protein) Glycoprotein B (protein) H-2 class I histocompatibility antigen, K-B alpha chain (protein)

Explore in 3D

2GUM \| pdb_00002gum	Download File View File

Crystal structure of the extracellular domain of glycoprotein B from Herpes Simplex Virus type I

Heldwein, E.E.

(2006) Science 313: 217-220

Released	2006-07-25
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Human alphaherpesvirus 1 strain KOS
Macromolecule	Glycoprotein B (protein)
Unique Ligands	NA

Explore in 3D

3EYF \| pdb_00003eyf	Download File View File

Crystal structure of anti-human cytomegalovirus antibody 8f9 plus gB peptide

Thomson, C.A., Bryson, S., McLean, G.R., Creagh, A.L., Pai, E.F., Schrader, J.W.

(2008) EMBO J 27: 2592-2602

Released	2008-12-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens Human cytomegalovirus (strain Towne)
Macromolecule	8f9 Fab (protein) AD-2 (protein) Synthetic peptide (protein)
Unique Ligands	GOL

Explore in 3D

3NW8 \| pdb_00003nw8	Download File View File

Glycoprotein B from Herpes simplex virus type 1, Y179S mutant, high-pH

Stampfer, S.D., Lou, H., Cohen, G.H., Eisenberg, R.J., Heldwein, E.E.

(2010) J Virol 84: 12924-12933

Released	2010-12-01
Method	X-RAY DIFFRACTION 2.75915 Å
Organisms	Human alphaherpesvirus 1 strain KOS
Macromolecule	Envelope glycoprotein B (protein)
Unique Ligands	CL, MRY, NA, NAG
Unique branched monosaccharides	NAG

Explore in 3D

3NWA \| pdb_00003nwa	Download File View File

Glycoprotein B from Herpes simplex virus type 1, W174R mutant, low-pH

Stampfer, S.D., Lou, H., Cohen, G.H., Eisenberg, R.J., Heldwein, E.E.

(2010) J Virol 84: 12924-12933

Released	2010-12-01
Method	X-RAY DIFFRACTION 2.2629 Å
Organisms	Human alphaherpesvirus 1 strain KOS
Macromolecule	Envelope glycoprotein B (protein)
Unique Ligands	MRY, NAG

Explore in 3D

3NWD \| pdb_00003nwd	Download File View File

Glycoprotein B from Herpes simplex virus type 1, Y179S mutant, low-pH

Stampfer, S.D., Lou, H., Cohen, G.H., Eisenberg, R.J., Heldwein, E.E.

(2010) J Virol 84: 12924-12933

Released	2010-12-01
Method	X-RAY DIFFRACTION 2.8803 Å
Organisms	Human alphaherpesvirus 1 strain KOS
Macromolecule	Envelope glycoprotein B (protein)
Unique Ligands	CL, MRY, NAG
Unique branched monosaccharides	NAG

Explore in 3D

3NWF \| pdb_00003nwf	Download File View File

Glycoprotein B from Herpes simplex virus type 1, low-pH

Stampfer, S.D., Lou, H., Cohen, G.H., Eisenberg, R.J., Heldwein, E.E.

(2010) J Virol 84: 12924-12933

Released	2010-12-01
Method	X-RAY DIFFRACTION 3 Å
Organisms	Human alphaherpesvirus 1 strain KOS
Macromolecule	Envelope glycoprotein B (protein)
Unique Ligands	MRY, NA, NAG

Explore in 3D

4HSI \| pdb_00004hsi	Download File View File

Glycoprotein B from Herpes simplex virus type 1, A504P/R505G/Q507G/N511G mutant, low-pH

Heldwein, E.E.

(2013) J Mol Biology 425: 2056-2071

Released	2013-03-27
Method	X-RAY DIFFRACTION 3.101 Å
Organisms	Human alphaherpesvirus 1 strain KOS
Macromolecule	Envelope glycoprotein B (protein)
Unique Ligands	CL, MRY, NAG
Unique branched monosaccharides	NAG

Explore in 3D

4L1R \| pdb_00004l1r	Download File View File

Glycoprotein B from Herpes Simplex Virus type 1, A549T Rate-of-Entry mutant, low-pH

Stampfer, S.D., Heldwein, E.E.

Released	2013-06-26
Method	X-RAY DIFFRACTION 3.0255 Å
Organisms	Human alphaherpesvirus 1 strain KOS
Macromolecule	Envelope glycoprotein B (protein)
Unique Ligands	CL, NAG
Unique branched monosaccharides	NAG

Explore in 3D

4OSN \| pdb_00004osn	Download File View File

Crystal structure of engineered HCMV glycoprotein B Domain II

Diestel, U., Muller, Y.A.

To be published

Released	2014-08-13
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Human herpesvirus 5 strain Towne
Macromolecule	Envelope glycoprotein B (protein)

Explore in 3D

4OT1 \| pdb_00004ot1	Download File View File

Structural Basis for the Recognition of Human Cytomegalovirus Glycoprotein B by the Neutralizing Human Antibody SM5-1

Diestel, U., Muller, Y.A.

(2014) PLoS Pathog 10: e1004377-e1004377

Released	2014-08-13
Method	X-RAY DIFFRACTION 2.11 Å
Organisms	Homo sapiens Human herpesvirus 5 strain Towne
Macromolecule	Envelope glycoprotein B (protein) SM5-1 Fab Heavy Chain (protein) SM5-1 Fab Light Chain (protein)
Unique Ligands	EDO, EPE

Explore in 3D

5C6T \| pdb_00005c6t	Download File View File

Crystal structure of HCMV glycoprotein B in complex with 1G2 Fab

Chandramouli, S., Ciferri, C., Settembre, E.C., Carfi, A.

(2015) Nat Commun 6: 8176-8176

Released	2015-09-23
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Homo sapiens Human herpesvirus 5 strain Towne
Macromolecule	1G2 Fab heavy chain (protein) 1G2 Fab light chain (protein) Envelope glycoprotein B (protein)
Unique Ligands	MG, NAG
Unique branched monosaccharides	NAG

Explore in 3D

5CXF \| pdb_00005cxf	Download File View File

Crystal structure of the extracellular domain of glycoprotein B from Human Cytomegalovirus

Burke, H.G., Heldwein, E.E.

(2015) PLoS Pathog 11: e1005227-e1005227

Released	2015-10-28
Method	X-RAY DIFFRACTION 3.602 Å
Organisms	Human herpesvirus 5 strain AD169
Macromolecule	Envelope glycoprotein B (protein)
Unique Ligands	CA, NAG
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

5YS2 \| pdb_00005ys2	Download File View File

Structure of the domain IV(D_IV) of Pseudorabies virus glycoprotein B( PRV gB)

Hu, X.L., Yang, F.L.

(2017) PLoS Pathog 13: e1006777-e1006777

Released	2017-12-27
Method	X-RAY DIFFRACTION 2.698 Å
Organisms	Suid alphaherpesvirus 1
Macromolecule	Envelope glycoprotein B,Envelope glycoprotein B (protein)

Explore in 3D

5YS6 \| pdb_00005ys6	Download File View File

Structure of the ectodomain of pseudorabies virus glycoproten B

Hu, X.L., Yang, F.L.

To be published

Released	2017-12-27
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Suid alphaherpesvirus 1
Macromolecule	PRV glycoproten B (protein)

Explore in 3D

5ZS0 \| pdb_00005zs0	Download File View File

Structure of glycoprotein B Domain IV of pseudorabies virus with 7B11 antibody

Hu, X.L., Yang, F.L.

To be published

Released	2019-05-22
Method	X-RAY DIFFRACTION 3.29 Å
Organisms	Mus musculus Suid alphaherpesvirus 1
Macromolecule	7B11 heavy chain (protein) 7B11 light chain (protein) Envelope glycoprotein B,Envelope glycoprotein B (protein)

Explore in 3D

6BM8 \| pdb_00006bm8	Download File View File

Crystal structure of glycoprotein B from Herpes Simplex Virus type I

Cooper, R.S., Heldwein, E.E.

(2018) Nat Struct Mol Biol 25: 416-424

Released	2018-05-16
Method	X-RAY DIFFRACTION 4.1 Å
Organisms	Human alphaherpesvirus 1
Macromolecule	Envelope glycoprotein B (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

Explore in 3D

6ESC \| pdb_00006esc	Download File View File

Crystal structure of Pseudorabies virus glycoprotein B

Backovic, M., Vaney, M.C., Rey, F.A., Haouz, A.

(2018) J Virol 92:

Released	2017-11-08
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Suid alphaherpesvirus 1
Macromolecule	Envelope glycoprotein B (protein)
Unique Ligands	GOL, NAG

Explore in 3D

6VLK \| pdb_00006vlk	Download File View File

A varicella-zoster virus glycoprotein

Xing, Y.

(2020) Nat Commun 11: 4141-4141

Released	2020-07-15
Method	X-RAY DIFFRACTION 2.4529 Å
Organisms	Human herpesvirus 3 strain Oka vaccine
Macromolecule	Envelope glycoprotein B (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

6Z9M \| pdb_00006z9m	Download File View File

Pseudoatomic model of the pre-fusion conformation of glycoprotein B of Herpes simplex virus 1

Vollmer, B., Prazak, V., Vasishtan, D., Jefferys, E.E., Hernandez-Duran, A., Vallbracht, M., Klupp, B., Mettenleiter, T.C., Backovic, M., Rey, F.A., Topf, M., Gruenewald, K.

(2020) Sci Adv 6:

Released	2020-10-07
Method	ELECTRON MICROSCOPY 9.1 Å
Organisms	Human alphaherpesvirus 1
Macromolecule	Envelope glycoprotein B (protein)

Explore in 3D

7FBI \| pdb_00007fbi	Download File View File

Cryo-EM structure of EBV gB in complex with nAbs 3A3 and 3A5

Zheng, Q., Li, S., Zha, Z., Hong, J., Chen, Y., Zhang, X.

To be published

Released	2022-07-13
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Oryctolagus cuniculus human gammaherpesvirus 4
Macromolecule	3A3 heavy chain (protein) 3A3 light chain (protein) 3A5 heavy chain (protein) 3A5 light chain (protein) Envelope glycoprotein B (protein)

1 to 25 of 34 Structures

Page 1 of 2

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1RJZ | pdb_00001rjz

1RK0 | pdb_00001rk0

1RK1 | pdb_00001rk1

1T0M | pdb_00001t0m

1T0N | pdb_00001t0n

2GUM | pdb_00002gum

3EYF | pdb_00003eyf

3NW8 | pdb_00003nw8

3NWA | pdb_00003nwa

3NWD | pdb_00003nwd

3NWF | pdb_00003nwf

4HSI | pdb_00004hsi

4L1R | pdb_00004l1r

4OSN | pdb_00004osn

4OT1 | pdb_00004ot1

5C6T | pdb_00005c6t

5CXF | pdb_00005cxf

5YS2 | pdb_00005ys2

5YS6 | pdb_00005ys6

5ZS0 | pdb_00005zs0

6BM8 | pdb_00006bm8

6ESC | pdb_00006esc

6VLK | pdb_00006vlk

6Z9M | pdb_00006z9m

7FBI | pdb_00007fbi