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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Keywords HAS EXACT PHRASE "ANTIVIRAL PROTEIN"

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Search Summary

This query matches 466 Structures.

Refinements

Structure Determination Methodology

experimental (466)

Scientific Name of Source Organism

	Homo sapiens (169)
	Severe acute respiratory syndrome coronavirus 2 (117)
	synthetic construct (31)
	Mus musculus (24)
	Lama glama (22)
	Human immunodeficiency virus 1 (16)
	Bacillus subtilis (13)
	Nostoc ellipsosporum (13)
	Saccharolobus islandicus REY15A (13)
	Escherichia coli (12)

More...

Taxonomy

	Eukaryota (265)
	Riboviria (209)
	Bacteria (95)
	other sequences (31)
	Duplodnaviria (22)
	Archaea (18)
	unclassified sequences (11)

Experimental Method

	X-RAY DIFFRACTION (286)
	ELECTRON MICROSCOPY (148)
	SOLUTION NMR (32)

Polymer Entity Type

	Protein (466)
	RNA (58)
	DNA (17)

Refinement Resolution (Å)

	1.0 - 1.5 (32)
	1.5 - 2.0 (83)
	2.0 - 2.5 (88)
	2.5 - 3.0 (79)
	3.0 - 3.5 (97)
	3.5 - 4.0 (41)
	4.0 - 4.5 (10)
	> 4.5 (4)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (4)
	2000 - 2004 (12)
	2005 - 2009 (12)
	2010 - 2014 (42)
	2015 - 2019 (40)
	2020 - 2024 (324)
	2025 - 2029 (31)

Enzyme Classification Name

	Hydrolases (65)
	Transferases (17)
	Isomerases (5)
	Lyases (3)
	Ligases (1)

Membrane Protein Annotation

	MemProtMD (2)
	OPM (2)
	mpstruc (2)

Symmetry Type

	Asymmetric (303)
	Cyclic (152)
	Dihedral (12)
	Helical (3)

SCOP Classification

	All beta proteins (42)
	Alpha and beta proteins (a+b) (26)
	All alpha proteins (8)
	Artifacts (6)
	Designed proteins (2)
	Alpha and beta proteins (a/b) (1)
	Coiled coil proteins (1)
	Small proteins (1)

AllSelected

1 to 25 of 466 Structures

Page 1 of 19

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1APA \| pdb_00001apa	Download File View File

X-RAY STRUCTURE OF A POKEWEED ANTIVIRAL PROTEIN, CODED BY A NEW GENOMIC CLONE, AT 0.23 NM RESOLUTION. A MODEL STRUCTURE PROVIDES A SUITABLE ELECTROSTATIC FIELD FOR SUBSTRATE BINDING.

Ago, H., Kataoka, J., Tsuge, H., Habuka, N., Inagaki, E., Noma, M., Miyano, M.

(1994) Eur J Biochem 225: 369-374

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Phytolacca americana
Macromolecule	POKEWEED ANTIVIRAL PROTEIN (protein)

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1ID6 \| pdb_00001id6	Download File View File

SOLUTION STRUCTURES OF SYR6

Sato, A., Kawaguchi, K., Kimura, K., Tanimura, R., Sone, S.

To be published

Released	2002-04-10
Method	SOLUTION NMR
Macromolecule	SYR6 (protein)

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1ID7 \| pdb_00001id7	Download File View File

SOLUTION STRUCTURE OF SYR6

Sato, A., Kawaguchi, K., Kimura, K., Tanimura, R., Sone, S.

To be published

Released	2002-04-10
Method	SOLUTION NMR
Macromolecule	SYR6 (protein)

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1IIY \| pdb_00001iiy	Download File View File

Solution NMR Structure of Complex of 1:2 Cyanovirin-N:Man-Alpha1,2-Man-Alpha Restrained Regularized Mean Coordinates

Bewley, C.A.

(2001) Structure 9: 931-940

Released	2001-10-24
Method	SOLUTION NMR
Organisms	Nostoc ellipsosporum
Macromolecule	CYANOVIRIN-N (protein)
Unique branched monosaccharides	MAN

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1JE4 \| pdb_00001je4	Download File View File

Solution structure of the monomeric variant of the chemokine MIP-1beta

Kim, S., Jao, S., Laurence, J.S., LiWang, P.J.

(2001) Biochemistry 40: 10782-10791

Released	2001-10-03
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	macrophage inflammatory protein 1-beta (protein)

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1L5B \| pdb_00001l5b	Download File View File

DOMAIN-SWAPPED CYANOVIRIN-N DIMER

Barrientos, L.G., Louis, J.M., Botos, I., Mori, T., Han, Z., O'Keefe, B.R., Boyd, M.R., Wlodawer, A., Gronenborn, A.M.

(2002) Structure 10: 673-686

Released	2002-05-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Nostoc ellipsosporum
Macromolecule	cyanovirin-N (protein)
Unique Ligands	NA, NHE

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1L5E \| pdb_00001l5e	Download File View File

The domain-swapped dimer of CV-N in solution

Barrientos, L.G., Louis, J.M., Botos, I., Mori, T., Han, Z., O'Keefe, B.R., Boyd, M.R., Wlodawer, A., Gronenborn, A.M.

(2002) Structure 10: 673-686

Released	2002-06-05
Method	SOLUTION NMR
Organisms	Nostoc ellipsosporum
Macromolecule	Cyanovirin-N (protein)

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1LOM \| pdb_00001lom	Download File View File

CYANOVIRIN-N DOUBLE MUTANT P51S S52P

Botos, I., Mori, T., Cartner, L.K., Boyd, M.R., Wlodawer, A.

(2002) Biochem Biophys Res Commun 294: 184-190

Released	2002-06-26
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Nostoc ellipsosporum
Macromolecule	Cyanovirin-N (protein)
Unique Ligands	CA, SO4

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1LP8 \| pdb_00001lp8	Download File View File

HIGH RESOLUTION STRUCTURE OF RECOMBINANT DIANTHIN ANTIVIRAL PROTEIN-POTENT ANTI-HIV AGENT

Kurinov, I.V., Rajamohan, F., Uckun, F.M.

(2004) Arzneimittelforschung 54: 692-702

Released	2004-05-11
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Dianthus caryophyllus
Macromolecule	DIANTHIN 30 (protein)

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1LPC \| pdb_00001lpc	Download File View File

HIGH RESOLUTION STRUCTURE OF RECOMBINANT DIANTHIN ANTIVIRAL PROTEIN-POTENT ANTI-HIV AGENT (COMPLEX WITH CYCLIC AMP)

Kurinov, I.V., Rajamohan, F., Uckun, F.M.

(2004) Arzneimittelforschung 54: 692-702

Released	2004-05-11
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Dianthus caryophyllus
Macromolecule	DIANTHIN 30 (protein)
Unique Ligands	CMP

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1LPD \| pdb_00001lpd	Download File View File

HIGH RESOLUTION STRUCTURE OF RECOMBINANT DIANTHIN ANTIVIRAL PROTEIN-POTENT ANTI-HIV AGENT (COMPLEX WITH ADENINE)

Kurinov, I.V., Rajamohan, F., Uckun, F.M.

(2004) Arzneimittelforschung 54: 692-702

Released	2004-05-11
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Dianthus caryophyllus
Macromolecule	Dianthin 30 (protein)
Unique Ligands	ADE

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1QCG \| pdb_00001qcg	Download File View File

LOW TEMPERATURE STRUCTURE OF POKEWEED ANTIVIRAL PROTEIN

Kurinov, I.V., Myers, D.E., Irvin, J.D., Uckun, F.M.

(1999) Protein Sci 8: 1765-1772

Released	1999-09-15
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Phytolacca americana
Macromolecule	POKEWEED ANTIVIRAL PROTEIN (protein)

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1QCI \| pdb_00001qci	Download File View File

LOW TEMPERATURE STRUCTURE OF POKEWEED ANTIVIRAL PROTEIN COMPLEXED WITH ADENINE

Kurinov, I.V., Myers, D.E., Irvin, J.D., Uckun, F.M.

(1999) Protein Sci 8: 1765-1772

Released	1999-09-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Phytolacca americana
Macromolecule	POKEWEED ANTIVIRAL PROTEIN (protein)
Unique Ligands	ADE

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1QCJ \| pdb_00001qcj	Download File View File

LOW TEMPERATURE COMPLEX OF POKEWEED ANTIVIRAL PROTEIN WITH PTEORIC ACID

Kurinov, I.V., Myers, D.E., Irvin, J.D., Uckun, F.M.

(1999) Protein Sci 8: 1765-1772

Released	1999-09-15
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Phytolacca americana
Macromolecule	POKEWEED ANTIVIRAL PROTEIN (protein)
Unique Ligands	APT

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1S4U \| pdb_00001s4u	Download File View File

Crystal Structure analysis of the beta-propeller protein Ski8p

Cheng, Z., Song, H.

(2004) Protein Sci 13: 2673-2684

Released	2004-12-28
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Antiviral protein SKI8 (protein)

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1VMP \| pdb_00001vmp	Download File View File

STRUCTURE OF THE ANTI-HIV CHEMOKINE VMIP-II

Liwang, A.C., Wang, Z.-X., Sun, Y., Peiper, S.C., Liwang, P.J.

(1999) Protein Sci 8: 2270-2280

Released	1999-11-24
Method	SOLUTION NMR
Organisms	Human gammaherpesvirus 8
Macromolecule	PROTEIN (ANTI-HIV CHEMOKINE MIP VII) (protein)

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1ZA8 \| pdb_00001za8	Download File View File

NMR solution structure of a leaf-specific-expressed cyclotide vhl-1

Chen, B., Colgrave, M.L., Daly, N.L., Rosengren, K.J., Gustafson, K.R., Craik, D.J.

(2005) J Biological Chem 280: 22395-22405

Released	2005-04-12
Method	SOLUTION NMR
Organisms	Viola hederacea
Macromolecule	vhl-1 (protein)

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2ATG \| pdb_00002atg	Download File View File

NMR structure of Retrocyclin-2 in SDS

Daly, N.L., Chen, Y.K., Rosengren, K.J., Marx, U.C., Phillips, M.L., Waring, A.J., Wang, W., Lehrer, R.I., Craik, D.J.

(2007) Biochemistry 46: 9920-9928

Released	2005-09-06
Method	SOLUTION NMR
Macromolecule	Retrocyclin-2 (protein)

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2EGP \| pdb_00002egp	Download File View File

Solution structure of the RING-finger domain from human Tripartite motif protein 34

Inoue, K., Hayashi, F., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-09-04
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Tripartite motif-containing protein 34 (protein)
Unique Ligands	ZN

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2JMV \| pdb_00002jmv	Download File View File

Solution structure of scytovirin refined against residual dipolar couplings

McFeeters, R.L., Byrd, R.A.

(2007) J Mol Biology 369: 451-461

Released	2007-06-12
Method	SOLUTION NMR
Organisms	Scytonema varium
Macromolecule	Scytovirin (protein)

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2KKZ \| pdb_00002kkz	Download File View File

Solution NMR structure of the monomeric W187R mutant of A/Udorn NS1 effector domain. Northeast Structural Genomics target OR8C[W187R].

Aramini, J.M., Ma, L., Lee, H., Zhao, L., Cunningham, K., Ciccosanti, C., Janjua, H., Fang, Y., Xiao, R., Krug, R.M., Montelione, G.T., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2009-07-21
Method	SOLUTION NMR
Organisms	Influenza A virus (A/Hungary/2/1971(H3N2))
Macromolecule	Non-structural protein NS1 (protein)

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2KUK \| pdb_00002kuk	Download File View File

Solution structure of vhl-2

Daly, N.L., Chen, B., Nguyencong, P., Craik, D.J.

(2010) Aust J Chem 63: 771-778

Released	2011-01-12
Method	SOLUTION NMR
Organisms	Viola hederacea
Macromolecule	Leaf cyclotide 2 (protein)

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2KZ1 \| pdb_00002kz1	Download File View File

Inter-molecular interactions in a 44 kDa interferon-receptor complex detected by asymmetric back-protonation and 2D NOESY

Nudelman, I., Akabayov, S.R., Schnur, E., Biron, Z., Levy, R., Xu, Y., Yang, D., Anglister, J.

(2010) Biochemistry 49: 5117-5133

Released	2010-06-23
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Interferon alpha-2 (protein) Soluble IFN alpha/beta receptor (protein)

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2L6S \| pdb_00002l6s	Download File View File

Efficacy of an HIV-1 entry inhibitor targeting the GP41 fusion peptide

Forssmann, W., The, Y., Stoll, M., Adermann, K., Albrecht, U., Barlos, K., Busmann, A., Canales-Mayordomo, A., Gimenez-Gallego, G., Hirsch, J., Jimenez-Barbero, J., Meyer-Olson, D., Muench, J., Perez-Castells, J., Standker, L., Kirchhoff, F., Schmidt, R.E.

(2010) Sci Transl Med 2: 63re3-63re3

Released	2011-01-19
Method	SOLUTION NMR
Macromolecule	VIR-576 (protein)

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2L6T \| pdb_00002l6t	Download File View File

Efficacy of an HIV-1 entry inhibitor targeting the GP41 fusion peptide

Forssmann, W., The, Y., Stoll, M., Adermann, K., Albrecht, U., Barlos, K., Busmann, A., Can les-Mayordomo, A., Gimenez-Gallego, G., Hirsch, J., Jimenez-Barbero, J., Meyer-Olson, D., Muench, J., Perez-Castells, J., Staendker, L., Kirchhoff, F., Schmidt, R.E.

(2010) Sci Transl Med 2: 63re3-63re3

Released	2011-01-19
Method	SOLUTION NMR
Macromolecule	VIR-576 (protein)

1 to 25 of 466 Structures

Page 1 of 19

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1APA | pdb_00001apa

1ID6 | pdb_00001id6

1ID7 | pdb_00001id7

1IIY | pdb_00001iiy

1JE4 | pdb_00001je4

1L5B | pdb_00001l5b

1L5E | pdb_00001l5e

1LOM | pdb_00001lom

1LP8 | pdb_00001lp8

1LPC | pdb_00001lpc

1LPD | pdb_00001lpd

1QCG | pdb_00001qcg

1QCI | pdb_00001qci

1QCJ | pdb_00001qcj

1S4U | pdb_00001s4u

1VMP | pdb_00001vmp

1ZA8 | pdb_00001za8

2ATG | pdb_00002atg

2EGP | pdb_00002egp

2JMV | pdb_00002jmv

2KKZ | pdb_00002kkz

2KUK | pdb_00002kuk

2KZ1 | pdb_00002kz1

2L6S | pdb_00002l6s

2L6T | pdb_00002l6t