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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Keywords HAS EXACT PHRASE "TRANSCRIPTION/Transcription regulator"

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Search Summary

This query matches 10 Structures.

Refinements

Structure Determination Methodology

experimental (10)

Scientific Name of Source Organism

	Homo sapiens (9)
	Rattus norvegicus (1)
	Xenopus tropicalis (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (10)
	Eukaryota (eukaryotes) (1)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (10)

Polymer Entity Type

Protein (10)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (6)
	3.0 - 3.5 (1)

Release Date

	2005 - 2009 (2)
	2010 - 2014 (8)

Enzyme Classification Name

Transferases (4)

Symmetry Type

	Asymmetric (9)
	Cyclic (2)

SCOP Classification

All alpha proteins (8)

AllSelected

1 to 10 of 10 Structures

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3AFR \| pdb_00003afr	Download File View File

Crystal Structure of VDR-LBD/22S-Butyl-1a,24R-dihydroxyvitamin D3 complex

Inaba, Y., Nakabayashi, M., Itoh, T., Ikura, T., Ito, N., Yamamoto, K.

(2010) J Steroid Biochem Mol Biol 121: 146-150

Released	2010-03-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Rattus norvegicus Xenopus tropicalis
Macromolecule	13-meric peptide from Mediator of RNA polymerase II transcription subunit 1 (protein) Vitamin D3 receptor (protein)
Unique Ligands	ICJ

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3FUG \| pdb_00003fug	Download File View File

Crystal Structure of the Retinoid X Receptor Ligand Binding Domain Bound to the Synthetic Agonist 3-[4-Hydroxy-3-(3,5,5,8,8-pentamethyl-5,6,7,8-tetrahydronaphthalen-2-yl)-phenyl]acrylic Acid

Bourguet, W.

(2009) J Med Chem 52: 3150-3158

Released	2009-05-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor coactivator 2 (protein) Retinoic acid receptor RXR-alpha (protein)
Unique Ligands	2E3

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3FUR \| pdb_00003fur	Download File View File

Crystal Structure of PPARg in complex with INT131

Wang, Z., Liu, J., Walker, N.

(2009) J Mol Biology 386: 1301-1311

Released	2009-06-09
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Nuclear receptor coactivator 1 (protein) Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	CL, Z12

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3OZ0 \| pdb_00003oz0	Download File View File

PPAR Delta in complex with azppard02

Ogg, D.

(2011) Bioorg Med Chem Lett 21: 492-496

Released	2011-01-19
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor delta (protein)
Unique Ligands	3OZ

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3PCU \| pdb_00003pcu	Download File View File

Crystal structure of human retinoic X receptor alpha ligand-binding domain complexed with LX0278 and SRC1 peptide

Zhang, H., Zhang, Y., Shen, H., Chen, J., Li, C., Chen, L., Hu, L., Jiang, H., Shen, X.

(2012) PLoS One 7: e31811-e31811

Released	2011-11-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor coactivator 2 (protein) Retinoic acid receptor RXR-alpha (protein)
Unique Ligands	LX8

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3T03 \| pdb_00003t03	Download File View File

Crystal structure of PPAR gamma ligand binding domain in complex with a novel partial agonist GQ-16

Rajagopalan, S., Webb, P., Baxter, J.D., Brennan, R.G., Phillips, K.J.

(2012) J Biological Chem 287: 28169-28179

Released	2012-05-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Nuclear receptor coactivator 1 (protein) Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	3T0

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3V9T \| pdb_00003v9t	Download File View File

Crystal structure of the PPARgamma-LBD complexed with a cercosporamide derivative modulator

Matsui, Y., Hanzawa, H.

(2012) Bioorg Med Chem Lett 22: 1348-1351

Released	2012-02-01
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	Peptide from Peroxisome proliferator-activated receptor gamma coactivator 1-alpha (protein) Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	17L

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3V9V \| pdb_00003v9v	Download File View File

Crystal structure of the PPARgamma-LBD complexed with a cercosporamide derivative modulator

Matsui, Y., Hanzawa, H.

(2011) Bioorg Med Chem Lett 22: 1348-1351

Released	2012-02-01
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Peptide from Peroxisome proliferator-activated receptor gamma coactivator 1-alpha (protein) Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	21L

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3V9Y \| pdb_00003v9y	Download File View File

Crystal structure of the PPARgamma-LBD complexed with a cercosporamide derivative modulator

Matsui, Y., Hanzawa, H.

(2012) Bioorg Med Chem Lett 22: 1348-1351

Released	2012-02-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Peptide from Nuclear receptor coactivator 1 (protein) Peroxisome proliferator-activated receptor gamma (protein)
Unique Ligands	24L

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4F9M \| pdb_00004f9m	Download File View File

Crystal structure of the PPARgamma-LBD complexed with a cercosporamide derivative modulator

Matsui, Y., Hanzawa, H.

(2012) Eur J Med Chem 54: 522-533

Released	2012-08-08
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor gamma (protein) peptide from Nuclear receptor coactivator 1 (protein)
Unique Ligands	FCM

1 to 10 of 10 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3AFR | pdb_00003afr

Crystal Structure of VDR-LBD/22S-Butyl-1a,24R-dihydroxyvitamin D3 complex

3FUG | pdb_00003fug

Crystal Structure of the Retinoid X Receptor Ligand Binding Domain Bound to the Synthetic Agonist 3-[4-Hydroxy-3-(3,5,5,8,8-pentamethyl-5,6,7,8-tetrahydronaphthalen-2-yl)-phenyl]acrylic Acid

3FUR | pdb_00003fur

Crystal Structure of PPARg in complex with INT131

3OZ0 | pdb_00003oz0

PPAR Delta in complex with azppard02

3PCU | pdb_00003pcu

Crystal structure of human retinoic X receptor alpha ligand-binding domain complexed with LX0278 and SRC1 peptide

3T03 | pdb_00003t03

Crystal structure of PPAR gamma ligand binding domain in complex with a novel partial agonist GQ-16

3V9T | pdb_00003v9t

Crystal structure of the PPARgamma-LBD complexed with a cercosporamide derivative modulator

3V9V | pdb_00003v9v

Crystal structure of the PPARgamma-LBD complexed with a cercosporamide derivative modulator

3V9Y | pdb_00003v9y

Crystal structure of the PPARgamma-LBD complexed with a cercosporamide derivative modulator

4F9M | pdb_00004f9m

Crystal structure of the PPARgamma-LBD complexed with a cercosporamide derivative modulator

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3AFR | pdb_00003afr

3FUG | pdb_00003fug

3FUR | pdb_00003fur

3OZ0 | pdb_00003oz0

3PCU | pdb_00003pcu

3T03 | pdb_00003t03

3V9T | pdb_00003v9t

3V9V | pdb_00003v9v

3V9Y | pdb_00003v9y

4F9M | pdb_00004f9m