1BTE

CRYSTAL STRUCTURE OF THE EXTRACELLULAR DOMAIN OF THE TYPE II ACTIVIN RECEPTOR


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.50 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.181 

wwPDB Validation   3D Report Full Report


This is version 2.2 of the entry. See complete history


Literature

Three-finger toxin fold for the extracellular ligand-binding domain of the type II activin receptor serine kinase.

Greenwald, J.Fischer, W.H.Vale, W.W.Choe, S.

(1999) Nat Struct Biol 6: 18-22

  • DOI: https://doi.org/10.1038/4887
  • Primary Citation of Related Structures:  
    1BTE

  • PubMed Abstract: 

    The transforming growth factor beta (TGFbeta) superfamily of cytokines elicit diverse biological responses by interacting with two distinct, but structurally related transmembrane receptor serine kinases (type I and type II). The binding of these dimeric ligands to the type II receptor is the first event in transmembrane signaling for this family. Here we report the 1.5 A resolution crystal structure of the extracellular ligand-binding domain of the type II activin receptor (ActRII-ECD), which reveals a fold similar to that of a class of toxins known as three-finger toxins. This fold is primarily dictated by disulfide bonds formed by eight conserved cysteines, with a characteristic spacing, and thus is likely to be shared by most of the type I and II receptors for the TGFbeta family. Sequence comparison with an evolutionarily distant activin binding-protein identifies several conserved residues, including two hydrophobic clusters that may form binding surfaces for activin and the type I receptor.


  • Organizational Affiliation

    Structural Biology Laboratory, The Salk Institute, La Jolla, California 92037, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
PROTEIN (ACTIVIN RECEPTOR TYPE II)
A, B
97Mus musculusMutation(s): 0 
EC: 2.7.1 (PDB Primary Data), 2.7.11.30 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for P27038 (Mus musculus)
Explore P27038 
Go to UniProtKB:  P27038
IMPC:  MGI:102806
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP27038
Glycosylation
Glycosylation Sites: 2Go to GlyGen: P27038-1
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.50 Å
  • R-Value Free: 0.222 
  • R-Value Work: 0.181 
  • Space Group: P 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 71.63α = 90
b = 71.63β = 90
c = 37.38γ = 120
Software Package:
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
MLPHAREphasing
ARPmodel building
DMmodel building
REFMACrefinement
CCP4data scaling
ARP/wARPmodel building
DMphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1999-02-09
    Type: Initial release
  • Version 1.1: 2007-10-16
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Non-polymer description, Version format compliance
  • Version 2.0: 2019-12-11
    Changes: Advisory, Atomic model, Derived calculations
  • Version 2.1: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Data collection, Derived calculations, Structure summary
  • Version 2.2: 2024-10-30
    Changes: Data collection, Database references, Structure summary