2KX7 | pdb_00002kx7

Solution structure of the E.coli RcsD-ABL domain (residues 688-795)

• PDB DOI: https://doi.org/10.2210/pdb2KX7/pdb

• Classification: PROTEIN BINDING
• Organism(s): Escherichia coli K-12
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2010-04-27 Released: 2011-04-06 
• Deposition Author(s): Rogov, V.V., Schmoee, K., Rogova, N.Y., Loehr, F., Bernhard, F., Doetsch, V.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 50 
• Conformers Submitted: 25 
• Selection Criteria: structures with the lowest energy 

Literature

Structural Insights into Rcs Phosphotransfer: The Newly Identified RcsD-ABL Domain Enhances Interaction with the Response Regulator RcsB.

Schmoe, K., Rogov, V.V., Rogova, N.Y., Lohr, F., Guntert, P., Bernhard, F., Dotsch, V.

(2011) Structure 19: 577-587

• PubMed: 21481780 
• DOI: https://doi.org/10.1016/j.str.2011.01.012
• Primary Citation of Related Structures:  
  2KX7


• PubMed Abstract: 
  

  The Rcs-signaling system is one of the most remarkable phosphorelay pathways in Enterobacteriaceae, comprising several membrane-bound and soluble proteins. Within the complex phosphotransfer pathway, the histidine phosphotransferase (HPt) domain of the RcsD membrane-bound component serves as a crucial factor in modulating the phosphorylation state of the transcription factor RcsB. We have identified a new domain, RcsD-ABL, located N terminally to RcsD-HPt that interacts with RcsB as well. We have determined its structure, characterized its interaction interface with RcsB, and built a structural model of the complex of the RcsD-ABL domain with RcsB. Our results indicate that the effector domain of RcsB, which normally binds to DNA, is recognized by RcsD-ABL, whereas the HPt domain interacts with the phosphoreceiver domain of RcsB.

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Organizational Affiliation: 

Institute of Biophysical Chemistry and Center for Biomolecular Magnetic Resonance, Goethe University, Max-von-Laue-Strasse 9, 60438 Frankfurt/Main, Germany.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 13.17 kDa 
• Atom Count: 858 
• Modelled Residue Count: 111 
• Deposited Residue Count: 117 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Sensor-like histidine kinase yojN	A	117	Escherichia coli K-12	Mutation(s): 0  Gene Names: b2216, JW2204, yojN, yojP, yojQ EC: 2.7.13.3 (PDB Primary Data), 2.7.2 (UniProt)
UniProt
Find proteins for P39838 (Escherichia coli (strain K12)) Explore P39838  Go to UniProtKB:  P39838

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 50 
• Conformers Submitted: 25 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-04-06 
Deposition Author(s): Rogov, V.V., Schmoee, K., Rogova, N.Y., Loehr, F., Bernhard, F., Doetsch, V.

Revision History  

• Version 1.0: 2011-04-06
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2024-05-01
  Changes: Data collection, Database references