Crystal Structure of Putative Dehydrogenase from Salmonella typhimurium LT2
Kim, Y., Evdokimova, E., Kudritska, M., Savchenko, A., Edwards, A., Joachimiak, A.To be published.
Experimental Data Snapshot
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Putative Dehydrogenase | 357 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Mutation(s): 0  EC: 1.1.1.18 | ||
UniProt | |||||
Find proteins for Q8ZK57 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)) Explore Q8ZK57  Go to UniProtKB:  Q8ZK57 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8ZK57 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 5 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAD Query on NAD | AA [auth G] DA [auth H] I [auth A] M [auth B] O [auth C] | NICOTINAMIDE-ADENINE-DINUCLEOTIDE C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N | |||
EPE Query on EPE | BA [auth G] EA [auth H] J [auth A] N [auth B] P [auth C] | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID C8 H18 N2 O4 S JKMHFZQWWAIEOD-UHFFFAOYSA-N | |||
EDO Query on EDO | CA [auth G], FA [auth H], S [auth D], W [auth E], X [auth E] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
ACY Query on ACY | K [auth A], L [auth A] | ACETIC ACID C2 H4 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-N | |||
K Query on K | GA [auth H], T [auth D] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B, C, D, E A, B, C, D, E, F, G, H | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
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a = 81.001 | α = 88.05 |
b = 98.981 | β = 81.78 |
c = 105.79 | γ = 89.92 |
Software Name | Purpose |
---|---|
SBC-Collect | data collection |
HKL-3000 | data collection |
HKL-3000 | phasing |
MLPHARE | phasing |
DM | model building |
SHELXD | phasing |
RESOLVE | model building |
Coot | model building |
REFMAC | refinement |
HKL-3000 | data reduction |
HKL-3000 | data scaling |
DM | phasing |
RESOLVE | phasing |