3WRI

Crystal structure of P450cam

• PDB DOI: https://doi.org/10.2210/pdb3WRI/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Pseudomonas putida
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2014-02-25 Released: 2015-03-18 
• Deposition Author(s): Kishimoto, A., Takagi, K., Amano, A., Sakurai, K., Mizushima, T., Shimada, H.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.90 Å
• R-Value Free: 0.268 
• R-Value Work: 0.190 
• R-Value Observed: 0.194 

Starting Model: experimental

Literature

Structure of P450cam intermediate

Kishimoto, A., Takagi, K., Amano, A., Sakurai, K., Katayama, Y., Aminaka, R., Ito, M., Mizushima, T., Shimada, H.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 96.64 kDa 
• Atom Count: 6,577 
• Modelled Residue Count: 806 
• Deposited Residue Count: 842 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Camphor 5-monooxygenase	A, B	421	Pseudomonas putida	Mutation(s): 0  Gene Names: camC, cyp101 EC: 1.14.15.1
UniProt
Find proteins for P00183 (Pseudomonas putida) Explore P00183  Go to UniProtKB:  P00183

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
HEM	C [auth A], E [auth B]	PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L
CAM	D [auth A], F [auth B]	CAMPHOR C10 H16 O DSSYKIVIOFKYAU-XCBNKYQSSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.90 Å
• R-Value Free: 0.268 
• R-Value Work: 0.190 
• R-Value Observed: 0.194 
• Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 61.44	α = 90
b = 74.227	β = 89.98
c = 92.636	γ = 90

Software Package:

Software Name	Purpose
MOLREP	phasing
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	refinement

Structure Validation

Entry History 

Deposition Data

• Released Date: 2015-03-18 
Deposition Author(s): Kishimoto, A., Takagi, K., Amano, A., Sakurai, K., Mizushima, T., Shimada, H.

Revision History  

• Version 1.0: 2015-03-18
  Type: Initial release
  
• Version 1.1: 2023-11-08
  Changes: Data collection, Database references, Derived calculations, Refinement description