Biochemical and structural insights into the fidelity of bacillus stearothermophilus DNA polymerase
Gan, J.H., Abdur, R., Liu, H.H., Sheng, J., Caton-Willians, J., Soares, A.S., Huang, Z.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA polymerase | 581 | Geobacillus stearothermophilus | Mutation(s): 2  Gene Names: DPO1 EC: 2.7.7.7 | ||
UniProt | |||||
Find proteins for E1C9K5 (Geobacillus stearothermophilus) Explore E1C9K5  Go to UniProtKB:  E1C9K5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | E1C9K5 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Find similar nucleic acids by: Sequence | 3D Structure
Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
DGP Query on DGP | L [auth C] | 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE C10 H14 N5 O7 P LTFMZDNNPPEQNG-KVQBGUIXSA-N | |||
SO4 Query on SO4 | I [auth A], J [auth A], K [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
GOL Query on GOL | D [auth A], E [auth A], F [auth A], G [auth A], H [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
CA Query on CA | M [auth C] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 88.573 | α = 90 |
b = 93.387 | β = 90 |
c = 105.928 | γ = 90 |
Software Name | Purpose |
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HKL-2000 | data collection |
PHASER | phasing |
REFMAC | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |