5U50 | pdb_00005u50

Crystal structure of citrus MAF1 in space group C 2 2 21

PDB DOI: https://doi.org/10.2210/pdb5U50/pdb

Classification: TRANSCRIPTION
Organism(s): Citrus sinensis
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2016-12-06 Released: 2017-07-19
Deposition Author(s): Soprano, A.S., Giuseppe, P.O., Nascimento, A.F.Z., Benedetti, C.E., Murakami, M.T.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free:
0.260 (Depositor), 0.260 (DCC)
R-Value Work:
0.222 (Depositor), 0.230 (DCC)
R-Value Observed:
0.224 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of citrus MAF1 in space group C 2 2 21

Soprano, A.S., Giuseppe, P.O., Nascimento, A.F.Z., Benedetti, C.E., Murakami, M.T.

To be published.

Macromolecule Content

Total Structure Weight: 122.71 kDa
Atom Count: 5,690
Modelled Residue Count: 680
Deposited Residue Count: 1,060
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Repressor of RNA polymerase III transcription	A, B, C, D	265	Citrus sinensis	Mutation(s): 0 Gene Names: MAF1
UniProt
Find proteins for G9I821 (Citrus sinensis) Explore G9I821 Go to UniProtKB: G9I821
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	G9I821
Sequence Annotations Expand
Reference Sequence LOADING

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free: 0.260 (Depositor), 0.260 (DCC)
R-Value Work: 0.222 (Depositor), 0.230 (DCC)
R-Value Observed: 0.224 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 140.165	α = 90
b = 228.406	β = 90
c = 85.89	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XSCALE	data scaling
MOLREP	phasing
PDB_EXTRACT	data extraction
XDS	data reduction

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2017-07-19

Deposition Author(s):

Nascimento, A.F.Z.

Benedetti, C.E.

Revision History (Full details and data files)

Version 1.0: 2017-07-19
Type: Initial release
Version 1.1: 2024-03-06
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.