6S7M | pdb_00006s7m

Structure of parasitic PEX14 in complex with a benzo[b]thiophene-7-carboxylic acid.

PDB DOI: https://doi.org/10.2210/pdb6S7M/pdb

Classification: SIGNALING PROTEIN
Organism(s): Trypanosoma brucei brucei
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2019-07-05 Released: 2020-07-15
Deposition Author(s): Hassaan, E., Heine, A., Klebe, G.
Funding Organization(s): European Commission

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.76 Å
R-Value Free:
0.267 (Depositor), 0.270 (DCC)
R-Value Work:
0.230 (Depositor), 0.230 (DCC)
R-Value Observed:
0.232 (Depositor)

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Structure of parasitic PEX14 in complex with a benzo[b]thiophene-7-carboxylic acid.

Hassaan, E., Heine, A., Klebe, G.

To be published.

Macromolecule Content

Total Structure Weight: 63.89 kDa
Atom Count: 4,286
Modelled Residue Count: 524
Deposited Residue Count: 544
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Peroxin 14	A, B, C, D, E A, B, C, D, E, F, G, H	68	Trypanosoma brucei brucei	Mutation(s): 1 Gene Names: PEX14
UniProt
Find proteins for Q8IEW2 (Trypanosoma brucei brucei) Explore Q8IEW2 Go to UniProtKB: Q8IEW2
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q8IEW2
Sequence Annotations Expand
Reference Sequence LOADING

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
KZ2 (Subject of Investigation/LOI) Query on KZ2 Download Ideal Coordinates CCD File SDF format, chain I [auth A] SDF format, chain K [auth B] SDF format, chain L [auth C] SDF format, chain M [auth D] SDF format, chain O [auth E] SDF format, chain P [auth E] MOL2 format, chain I [auth A] MOL2 format, chain K [auth B] MOL2 format, chain L [auth C] MOL2 format, chain M [auth D] MOL2 format, chain O [auth E] MOL2 format, chain P [auth E] mmCIF format, chain I [auth A] mmCIF format, chain K [auth B] mmCIF format, chain L [auth C] mmCIF format, chain M [auth D] mmCIF format, chain O [auth E] mmCIF format, chain P [auth E]	I [auth A] K [auth B] L [auth C] M [auth D] O [auth E] I [auth A], K [auth B], L [auth C], M [auth D], O [auth E], P [auth E]	1-benzothiophene-7-carboxylic acid C₉ H₆ O₂ S LJPSRTWIAXVPIS-UHFFFAOYSA-N		Interactions Focus chain I [auth A] Focus chain K [auth B] Focus chain L [auth C] Focus chain M [auth D] Focus chain O [auth E] Focus chain P [auth E] Interactions & Density Focus chain I [auth A] Focus chain K [auth B] Focus chain L [auth C] Focus chain M [auth D] Focus chain O [auth E] Focus chain P [auth E]
PEG Query on PEG Download Ideal Coordinates CCD File SDF format, chain J [auth A] SDF format, chain N [auth D] MOL2 format, chain J [auth A] MOL2 format, chain N [auth D] mmCIF format, chain J [auth A] mmCIF format, chain N [auth D]	J [auth A], N [auth D]	DI(HYDROXYETHYL)ETHER C₄ H₁₀ O₃ MTHSVFCYNBDYFN-UHFFFAOYSA-N		Interactions Focus chain J [auth A] Focus chain N [auth D] Interactions & Density Focus chain J [auth A] Focus chain N [auth D]