6FRK |

Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex

PDB DOI: https://doi.org/10.2210/pdb6FRK/pdb
EM Map EMD-4300: EMDB EMDataResource
NAKB: 6FRK

Classification: TRANSLATION
Organism(s): Canis lupus familiaris, Oryctolagus cuniculus, Saccharomyces cerevisiae
Expression System: Oryctolagus cuniculus, Escherichia coli
Mutation(s): No

Deposited: 2018-02-16 Released: 2018-03-28
Deposition Author(s): Kobayashi, K., Jomaa, A., Ban, N.
Funding Organization(s): Swiss National Science Foundation

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.70 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Structure of a prehandover mammalian ribosomal SRP·SRP receptor targeting complex.

Kobayashi, K., Jomaa, A., Lee, J.H., Chandrasekar, S., Boehringer, D., Shan, S.O., Ban, N.

(2018) Science 360: 323-327

PubMed: 29567807 Search on PubMedSearch on PubMed Central
DOI: https://doi.org/10.1126/science.aar7924
Primary Citation of Related Structures:
6FRK

PubMed Abstract:
Signal recognition particle (SRP) targets proteins to the endoplasmic reticulum (ER). SRP recognizes the ribosome synthesizing a signal sequence and delivers it to the SRP receptor (SR) on the ER membrane followed by the transfer of the signal sequence to the translocon. Here, we present the cryo-electron microscopy structure of the mammalian translating ribosome in complex with SRP and SR in a conformation preceding signal sequence handover. The structure visualizes all eukaryotic-specific SRP and SR proteins and reveals their roles in stabilizing this conformation by forming a large protein assembly at the distal site of SRP RNA. We provide biochemical evidence that the guanosine triphosphate hydrolysis of SRP·SR is delayed at this stage, possibly to provide a time window for signal sequence handover to the translocon.

Organizational Affiliation

Department of Biology, Institute of Molecular Biology and Biophysics, ETH Zurich, Otto-Stern-Weg 5, Zurich CH-8093, Switzerland.

Macromolecule Content

Total Structure Weight: 2,504.83 kDa
Atom Count: 159,957
Modelled Residue Count: 12,752
Deposited Residue Count: 13,975
Unique protein chains: 53
Unique nucleic acid chains: 5

Macromolecules

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Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein eL28	C [auth 3]	125	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein L12	D [auth 4]	163	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
60S acidic ribosomal protein P0	F [auth 6]	202	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein L8	I [auth A]	244	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein uL3	J [auth B]	394	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein uL4	K [auth C]	367	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein uL18	L [auth D]	292	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein eL6	M [auth E]	236	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein uL30	N [auth F]	225	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein eL8	O [auth G]	238	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein uL6	P [auth H]	190	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 17
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein uL16	Q [auth I]	213	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 18
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein uL5	R [auth J]	170	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 19
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein eL13	S [auth L]	210	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 20
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein eL14	T [auth M]	138	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 21
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein L15	U [auth N]	203	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 22
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein uL13	V [auth O]	201	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 23
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein uL22	W [auth P]	153	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 24
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein eL18	X [auth Q]	187	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 25
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein eL19	Y [auth R]	180	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 26
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein eL20	Z [auth S]	175	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 27
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein eL21	AA [auth T]	159	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 28
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein eL22	BA [auth U]	99	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 29
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein L23	CA [auth V]	131	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 30
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein eL24	DA [auth W]	63	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 31
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein uL23	EA [auth X]	119	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 32
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein uL24	FA [auth Y]	134	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 33
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L27	GA [auth Z]	135	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 34
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein uL15	HA [auth a]	147	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 35
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L29	IA [auth b]	75	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 36
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein eL30	JA [auth c]	94	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 37
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein eL31	KA [auth d]	107	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 38
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein eL32	LA [auth e]	128	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 39
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein eL33	MA [auth f]	109	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 40
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein eL34	NA [auth g]	114	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 41
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein uL29	OA [auth h]	122	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 42
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein eL36	PA [auth i]	102	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 43
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein L37	QA [auth j]	86	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 44
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein eL38	RA [auth k]	69	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 45
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein eL39	SA [auth l]	50	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 46
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein eL40	TA [auth m]	52	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 47
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein eL41	UA [auth n]	23	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 48
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein eL42	VA [auth o]	104	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 49
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein eL43	WA [auth p]	91	Oryctolagus cuniculus	Mutation(s): 0
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Entity ID: 50
Molecule	Chains	Sequence Length	Organism	Details	Image
Signal recognition particle subunit SRP19	XA [auth q]	105	Canis lupus familiaris	Mutation(s): 0
UniProt
Find proteins for J9PAS6 (Canis lupus familiaris) Explore J9PAS6 Go to UniProtKB: J9PAS6
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UniProt Group	J9PAS6
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Entity ID: 51
Molecule	Chains	Sequence Length	Organism	Details	Image
Signal recognition particle subunit SRP72,Signal recognition particle subunit SRP72,Signal recognition particle subunit SRP72	YA [auth r]	605	Canis lupus familiaris	Mutation(s): 0
UniProt
Find proteins for P33731 (Canis lupus familiaris) Explore P33731 Go to UniProtKB: P33731
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UniProt Group	P33731
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Entity ID: 52
Molecule	Chains	Sequence Length	Organism	Details	Image
Signal sequence	ZA [auth t]	11	Saccharomyces cerevisiae	Mutation(s): 0
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Entity ID: 53
Molecule	Chains	Sequence Length	Organism	Details	Image
Signal recognition particle subunit SRP68	AB [auth u]	568	Canis lupus familiaris	Mutation(s): 0
UniProt
Find proteins for Q00004 (Canis lupus familiaris) Explore Q00004 Go to UniProtKB: Q00004
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UniProt Group	Q00004
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Entity ID: 54
Molecule	Chains	Sequence Length	Organism	Details	Image
SRP receptor beta subunit	BB [auth v]	213	Oryctolagus cuniculus	Mutation(s): 0 Gene Names: SRPRB
UniProt
Find proteins for G1STG2 (Oryctolagus cuniculus) Explore G1STG2 Go to UniProtKB: G1STG2
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UniProt Group	G1STG2
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Entity ID: 55
Molecule	Chains	Sequence Length	Organism	Details	Image
Signal recognition particle 9 kDa protein	CB [auth w]	74	Canis lupus familiaris	Mutation(s): 0
UniProt
Find proteins for P21262 (Canis lupus familiaris) Explore P21262 Go to UniProtKB: P21262
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UniProt Group	P21262
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Entity ID: 56
Molecule	Chains	Sequence Length	Organism	Details	Image
Signal recognition particle 54 kDa protein	DB [auth x]	504	Canis lupus familiaris	Mutation(s): 0 EC: 3.6.5.4
UniProt
Find proteins for P61010 (Canis lupus familiaris) Explore P61010 Go to UniProtKB: P61010
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UniProt Group	P61010
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Entity ID: 57
Molecule	Chains	Sequence Length	Organism	Details	Image
SRP receptor alpha subunit	EB [auth y]	657	Oryctolagus cuniculus	Mutation(s): 0 Gene Names: SRPRA
UniProt
Find proteins for G1TCX6 (Oryctolagus cuniculus) Explore G1TCX6 Go to UniProtKB: G1TCX6
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UniProt Group	G1TCX6
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Entity ID: 58
Molecule	Chains	Sequence Length	Organism	Details	Image
Signal recognition particle 14 kDa protein	FB [auth z]	110	Canis lupus familiaris	Mutation(s): 0
UniProt
Find proteins for P16255 (Canis lupus familiaris) Explore P16255 Go to UniProtKB: P16255
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UniProt Group	P16255
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Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GTP Query on GTP Download Ideal Coordinates CCD File SDF format, chain KG [auth v] MOL2 format, chain KG [auth v] mmCIF format, chain KG [auth v]	KG [auth v]	GUANOSINE-5'-TRIPHOSPHATE C₁₀ H₁₆ N₅ O₁₄ P₃ XKMLYUALXHKNFT-UUOKFMHZSA-N		Interactions Focus chain KG [auth v] Interactions & Density Focus chain KG [auth v]
GNP Query on GNP Download Ideal Coordinates CCD File SDF format, chain LG [auth x] SDF format, chain NG [auth y] MOL2 format, chain LG [auth x] MOL2 format, chain NG [auth y] mmCIF format, chain LG [auth x] mmCIF format, chain NG [auth y]	LG [auth x], NG [auth y]	PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER C₁₀ H₁₇ N₆ O₁₃ P₃ UQABYHGXWYXDTK-UUOKFMHZSA-N		Interactions Focus chain LG [auth x] Focus chain NG [auth y] Interactions & Density Focus chain LG [auth x] Focus chain NG [auth y]
ZN Query on ZN Download Ideal Coordinates CCD File SDF format, chain GG [auth j] SDF format, chain HG [auth m] SDF format, chain IG [auth o] MOL2 format, chain GG [auth j] MOL2 format, chain HG [auth m] MOL2 format, chain IG [auth o] mmCIF format, chain GG [auth j] mmCIF format, chain HG [auth m] mmCIF format, chain IG [auth o]	GG [auth j], HG [auth m], IG [auth o]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain GG [auth j] Focus chain HG [auth m] Focus chain IG [auth o] Interactions & Density Focus chain GG [auth j] Focus chain HG [auth m] Focus chain IG [auth o]
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain AC [auth 5] SDF format, chain AD [auth 5] SDF format, chain AE [auth 5] SDF format, chain AF [auth 5] SDF format, chain AG [auth 8] SDF format, chain BC [auth 5] SDF format, chain BD [auth 5] SDF format, chain BE [auth 5] SDF format, chain BF [auth 5] SDF format, chain BG [auth 8] SDF format, chain CC [auth 5] SDF format, chain CD [auth 5] SDF format, chain CE [auth 5] SDF format, chain CF [auth 5] SDF format, chain CG [auth 8] SDF format, chain DC [auth 5] SDF format, chain DD [auth 5] SDF format, chain DE [auth 5] SDF format, chain DF [auth 5] SDF format, chain DG [auth P] SDF format, chain EC [auth 5] SDF format, chain ED [auth 5] SDF format, chain EE [auth 5] SDF format, chain EF [auth 5] SDF format, chain EG [auth V] SDF format, chain FC [auth 5] SDF format, chain FD [auth 5] SDF format, chain FE [auth 5] SDF format, chain FF [auth 5] SDF format, chain FG [auth g] SDF format, chain GB [auth 5] SDF format, chain GC [auth 5] SDF format, chain GD [auth 5] SDF format, chain GE [auth 5] SDF format, chain GF [auth 5] SDF format, chain HB [auth 5] SDF format, chain HC [auth 5] SDF format, chain HD [auth 5] SDF format, chain HE [auth 5] SDF format, chain HF [auth 5] SDF format, chain IB [auth 5] SDF format, chain IC [auth 5] SDF format, chain ID [auth 5] SDF format, chain IE [auth 5] SDF format, chain IF [auth 5] SDF format, chain JB [auth 5] SDF format, chain JC [auth 5] SDF format, chain JD [auth 5] SDF format, chain JE [auth 5] SDF format, chain JF [auth 5] SDF format, chain JG [auth v] SDF format, chain KB [auth 5] SDF format, chain KC [auth 5] SDF format, chain KD [auth 5] SDF format, chain KE [auth 5] SDF format, chain KF [auth 5] SDF format, chain LB [auth 5] SDF format, chain LC [auth 5] SDF format, chain LD [auth 5] SDF format, chain LE [auth 5] SDF format, chain LF [auth 5] SDF format, chain MB [auth 5] SDF format, chain MC [auth 5] SDF format, chain MD [auth 5] SDF format, chain ME [auth 5] SDF format, chain MF [auth 5] SDF format, chain MG [auth x] SDF format, chain NB [auth 5] SDF format, chain NC [auth 5] SDF format, chain ND [auth 5] SDF format, chain NE [auth 5] SDF format, chain NF [auth 5] SDF format, chain OB [auth 5] SDF format, chain OC [auth 5] SDF format, chain OD [auth 5] SDF format, chain OE [auth 5] SDF format, chain OF [auth 5] SDF format, chain OG [auth y] SDF format, chain PB [auth 5] SDF format, chain PC [auth 5] SDF format, chain PD [auth 5] SDF format, chain PE [auth 5] SDF format, chain PF [auth 5] SDF format, chain QB [auth 5] SDF format, chain QC [auth 5] SDF format, chain QD [auth 5] SDF format, chain QE [auth 5] SDF format, chain QF [auth 5] SDF format, chain RB [auth 5] SDF format, chain RC [auth 5] SDF format, chain RD [auth 5] SDF format, chain RE [auth 5] SDF format, chain RF [auth 5] SDF format, chain SB [auth 5] SDF format, chain SC [auth 5] SDF format, chain SD [auth 5] SDF format, chain SE [auth 5] SDF format, chain SF [auth 5] SDF format, chain TB [auth 5] SDF format, chain TC [auth 5] SDF format, chain TD [auth 5] SDF format, chain TE [auth 5] SDF format, chain TF [auth 5] SDF format, chain UB [auth 5] SDF format, chain UC [auth 5] SDF format, chain UD [auth 5] SDF format, chain UE [auth 5] SDF format, chain UF [auth 5] SDF format, chain VB [auth 5] SDF format, chain VC [auth 5] SDF format, chain VD [auth 5] SDF format, chain VE [auth 5] SDF format, chain VF [auth 7] SDF format, chain WB [auth 5] SDF format, chain WC [auth 5] SDF format, chain WD [auth 5] SDF format, chain WE [auth 5] SDF format, chain WF [auth 7] SDF format, chain XB [auth 5] SDF format, chain XC [auth 5] SDF format, chain XD [auth 5] SDF format, chain XE [auth 5] SDF format, chain XF [auth 7] SDF format, chain YB [auth 5] SDF format, chain YC [auth 5] SDF format, chain YD [auth 5] SDF format, chain YE [auth 5] SDF format, chain YF [auth 7] SDF format, chain ZB [auth 5] SDF format, chain ZC [auth 5] SDF format, chain ZD [auth 5] SDF format, chain ZE [auth 5] SDF format, chain ZF [auth 7] MOL2 format, chain AC [auth 5] MOL2 format, chain AD [auth 5] MOL2 format, chain AE [auth 5] MOL2 format, chain AF [auth 5] MOL2 format, chain AG [auth 8] MOL2 format, chain BC [auth 5] MOL2 format, chain BD [auth 5] MOL2 format, chain BE [auth 5] MOL2 format, chain BF [auth 5] MOL2 format, chain BG [auth 8] MOL2 format, chain CC [auth 5] MOL2 format, chain CD [auth 5] MOL2 format, chain CE [auth 5] MOL2 format, chain CF [auth 5] MOL2 format, chain CG [auth 8] MOL2 format, chain DC [auth 5] MOL2 format, chain DD [auth 5] MOL2 format, chain DE [auth 5] MOL2 format, chain DF [auth 5] MOL2 format, chain DG [auth P] MOL2 format, chain EC [auth 5] MOL2 format, chain ED [auth 5] MOL2 format, chain EE [auth 5] MOL2 format, chain EF [auth 5] MOL2 format, chain EG [auth V] MOL2 format, chain FC [auth 5] MOL2 format, chain FD [auth 5] MOL2 format, chain FE [auth 5] MOL2 format, chain FF [auth 5] MOL2 format, chain FG [auth g] MOL2 format, chain GB [auth 5] MOL2 format, chain GC [auth 5] MOL2 format, chain GD [auth 5] MOL2 format, chain GE [auth 5] MOL2 format, chain GF [auth 5] MOL2 format, chain HB [auth 5] MOL2 format, chain HC [auth 5] MOL2 format, chain HD [auth 5] MOL2 format, chain HE [auth 5] MOL2 format, chain HF [auth 5] MOL2 format, chain IB [auth 5] MOL2 format, chain IC [auth 5] MOL2 format, chain ID [auth 5] MOL2 format, chain IE [auth 5] MOL2 format, chain IF [auth 5] MOL2 format, chain JB [auth 5] MOL2 format, chain JC [auth 5] MOL2 format, chain JD [auth 5] MOL2 format, chain JE [auth 5] MOL2 format, chain JF [auth 5] MOL2 format, chain JG [auth v] MOL2 format, chain KB [auth 5] MOL2 format, chain KC [auth 5] MOL2 format, chain KD [auth 5] MOL2 format, chain KE [auth 5] MOL2 format, chain KF [auth 5] MOL2 format, chain LB [auth 5] MOL2 format, chain LC [auth 5] MOL2 format, chain LD [auth 5] MOL2 format, chain LE [auth 5] MOL2 format, chain LF [auth 5] MOL2 format, chain MB [auth 5] MOL2 format, chain MC [auth 5] MOL2 format, chain MD [auth 5] MOL2 format, chain ME [auth 5] MOL2 format, chain MF [auth 5] MOL2 format, chain MG [auth x] MOL2 format, chain NB [auth 5] MOL2 format, chain NC [auth 5] MOL2 format, chain ND [auth 5] MOL2 format, chain NE [auth 5] MOL2 format, chain NF [auth 5] MOL2 format, chain OB [auth 5] MOL2 format, chain OC [auth 5] MOL2 format, chain OD [auth 5] MOL2 format, chain OE [auth 5] MOL2 format, chain OF [auth 5] MOL2 format, chain OG [auth y] MOL2 format, chain PB [auth 5] MOL2 format, chain PC [auth 5] MOL2 format, chain PD [auth 5] MOL2 format, chain PE [auth 5] MOL2 format, chain PF [auth 5] MOL2 format, chain QB [auth 5] MOL2 format, chain QC [auth 5] MOL2 format, chain QD [auth 5] MOL2 format, chain QE [auth 5] MOL2 format, chain QF [auth 5] MOL2 format, chain RB [auth 5] MOL2 format, chain RC [auth 5] MOL2 format, chain RD [auth 5] MOL2 format, chain RE [auth 5] MOL2 format, chain RF [auth 5] MOL2 format, chain SB [auth 5] MOL2 format, chain SC [auth 5] MOL2 format, chain SD [auth 5] MOL2 format, chain SE [auth 5] MOL2 format, chain SF [auth 5] MOL2 format, chain TB [auth 5] MOL2 format, chain TC [auth 5] MOL2 format, chain TD [auth 5] MOL2 format, chain TE [auth 5] MOL2 format, chain TF [auth 5] MOL2 format, chain UB [auth 5] MOL2 format, chain UC [auth 5] MOL2 format, chain UD [auth 5] MOL2 format, chain UE [auth 5] MOL2 format, chain UF [auth 5] MOL2 format, chain VB [auth 5] MOL2 format, chain VC [auth 5] MOL2 format, chain VD [auth 5] MOL2 format, chain VE [auth 5] MOL2 format, chain VF [auth 7] MOL2 format, chain WB [auth 5] MOL2 format, chain WC [auth 5] MOL2 format, chain WD [auth 5] MOL2 format, chain WE [auth 5] MOL2 format, chain WF [auth 7] MOL2 format, chain XB [auth 5] MOL2 format, chain XC [auth 5] MOL2 format, chain XD [auth 5] MOL2 format, chain XE [auth 5] MOL2 format, chain XF [auth 7] MOL2 format, chain YB [auth 5] MOL2 format, chain YC [auth 5] MOL2 format, chain YD [auth 5] MOL2 format, chain YE [auth 5] MOL2 format, chain YF [auth 7] MOL2 format, chain ZB [auth 5] MOL2 format, chain ZC [auth 5] MOL2 format, chain ZD [auth 5] MOL2 format, chain ZE [auth 5] MOL2 format, chain ZF [auth 7] mmCIF format, chain AC [auth 5] mmCIF format, chain AD [auth 5] mmCIF format, chain AE [auth 5] mmCIF format, chain AF [auth 5] mmCIF format, chain AG [auth 8] mmCIF format, chain BC [auth 5] mmCIF format, chain BD [auth 5] mmCIF format, chain BE [auth 5] mmCIF format, chain BF [auth 5] mmCIF format, chain BG [auth 8] mmCIF format, chain CC [auth 5] mmCIF format, chain CD [auth 5] mmCIF format, chain CE [auth 5] mmCIF format, chain CF [auth 5] mmCIF format, chain CG [auth 8] mmCIF format, chain DC [auth 5] mmCIF format, chain DD [auth 5] mmCIF format, chain DE [auth 5] mmCIF format, chain DF [auth 5] mmCIF format, chain DG [auth P] mmCIF format, chain EC [auth 5] mmCIF format, chain ED [auth 5] mmCIF format, chain EE [auth 5] mmCIF format, chain EF [auth 5] mmCIF format, chain EG [auth V] mmCIF format, chain FC [auth 5] mmCIF format, chain FD [auth 5] mmCIF format, chain FE [auth 5] mmCIF format, chain FF [auth 5] mmCIF format, chain FG [auth g] mmCIF format, chain GB [auth 5] mmCIF format, chain GC [auth 5] mmCIF format, chain GD [auth 5] mmCIF format, chain GE [auth 5] mmCIF format, chain GF [auth 5] mmCIF format, chain HB [auth 5] mmCIF format, chain HC [auth 5] mmCIF format, chain HD [auth 5] mmCIF format, chain HE [auth 5] mmCIF format, chain HF [auth 5] mmCIF format, chain IB [auth 5] mmCIF format, chain IC [auth 5] mmCIF format, chain ID [auth 5] mmCIF format, chain IE [auth 5] mmCIF format, chain IF [auth 5] mmCIF format, chain JB [auth 5] mmCIF format, chain JC [auth 5] mmCIF format, chain JD [auth 5] mmCIF format, chain JE [auth 5] mmCIF format, chain JF [auth 5] mmCIF format, chain JG [auth v] mmCIF format, chain KB [auth 5] mmCIF format, chain KC [auth 5] mmCIF format, chain KD [auth 5] mmCIF format, chain KE [auth 5] mmCIF format, chain KF [auth 5] mmCIF format, chain LB [auth 5] mmCIF format, chain LC [auth 5] mmCIF format, chain LD [auth 5] mmCIF format, chain LE [auth 5] mmCIF format, chain LF [auth 5] mmCIF format, chain MB [auth 5] mmCIF format, chain MC [auth 5] mmCIF format, chain MD [auth 5] mmCIF format, chain ME [auth 5] mmCIF format, chain MF [auth 5] mmCIF format, chain MG [auth x] mmCIF format, chain NB [auth 5] mmCIF format, chain NC [auth 5] mmCIF format, chain ND [auth 5] mmCIF format, chain NE [auth 5] mmCIF format, chain NF [auth 5] mmCIF format, chain OB [auth 5] mmCIF format, chain OC [auth 5] mmCIF format, chain OD [auth 5] mmCIF format, chain OE [auth 5] mmCIF format, chain OF [auth 5] mmCIF format, chain OG [auth y] mmCIF format, chain PB [auth 5] mmCIF format, chain PC [auth 5] mmCIF format, chain PD [auth 5] mmCIF format, chain PE [auth 5] mmCIF format, chain PF [auth 5] mmCIF format, chain QB [auth 5] mmCIF format, chain QC [auth 5] mmCIF format, chain QD [auth 5] mmCIF format, chain QE [auth 5] mmCIF format, chain QF [auth 5] mmCIF format, chain RB [auth 5] mmCIF format, chain RC [auth 5] mmCIF format, chain RD [auth 5] mmCIF format, chain RE [auth 5] mmCIF format, chain RF [auth 5] mmCIF format, chain SB [auth 5] mmCIF format, chain SC [auth 5] mmCIF format, chain SD [auth 5] mmCIF format, chain SE [auth 5] mmCIF format, chain SF [auth 5] mmCIF format, chain TB [auth 5] mmCIF format, chain TC [auth 5] mmCIF format, chain TD [auth 5] mmCIF format, chain TE [auth 5] mmCIF format, chain TF [auth 5] mmCIF format, chain UB [auth 5] mmCIF format, chain UC [auth 5] mmCIF format, chain UD [auth 5] mmCIF format, chain UE [auth 5] mmCIF format, chain UF [auth 5] mmCIF format, chain VB [auth 5] mmCIF format, chain VC [auth 5] mmCIF format, chain VD [auth 5] mmCIF format, chain VE [auth 5] mmCIF format, chain VF [auth 7] mmCIF format, chain WB [auth 5] mmCIF format, chain WC [auth 5] mmCIF format, chain WD [auth 5] mmCIF format, chain WE [auth 5] mmCIF format, chain WF [auth 7] mmCIF format, chain XB [auth 5] mmCIF format, chain XC [auth 5] mmCIF format, chain XD [auth 5] mmCIF format, chain XE [auth 5] mmCIF format, chain XF [auth 7] mmCIF format, chain YB [auth 5] mmCIF format, chain YC [auth 5] mmCIF format, chain YD [auth 5] mmCIF format, chain YE [auth 5] mmCIF format, chain YF [auth 7] mmCIF format, chain ZB [auth 5] mmCIF format, chain ZC [auth 5] mmCIF format, chain ZD [auth 5] mmCIF format, chain ZE [auth 5] mmCIF format, chain ZF [auth 7]	AC [auth 5] AD [auth 5] AE [auth 5] AF [auth 5] AG [auth 8] AC [auth 5], AD [auth 5], AE [auth 5], AF [auth 5], AG [auth 8], BC [auth 5], BD [auth 5], BE [auth 5], BF [auth 5], BG [auth 8], CC [auth 5], CD [auth 5], CE [auth 5], CF [auth 5], CG [auth 8], DC [auth 5], DD [auth 5], DE [auth 5], DF [auth 5], DG [auth P], EC [auth 5], ED [auth 5], EE [auth 5], EF [auth 5], EG [auth V], FC [auth 5], FD [auth 5], FE [auth 5], FF [auth 5], FG [auth g], GB [auth 5], GC [auth 5], GD [auth 5], GE [auth 5], GF [auth 5], HB [auth 5], HC [auth 5], HD [auth 5], HE [auth 5], HF [auth 5], IB [auth 5], IC [auth 5], ID [auth 5], IE [auth 5], IF [auth 5], JB [auth 5], JC [auth 5], JD [auth 5], JE [auth 5], JF [auth 5], JG [auth v], KB [auth 5], KC [auth 5], KD [auth 5], KE [auth 5], KF [auth 5], LB [auth 5], LC [auth 5], LD [auth 5], LE [auth 5], LF [auth 5], MB [auth 5], MC [auth 5], MD [auth 5], ME [auth 5], MF [auth 5], MG [auth x], NB [auth 5], NC [auth 5], ND [auth 5], NE [auth 5], NF [auth 5], OB [auth 5], OC [auth 5], OD [auth 5], OE [auth 5], OF [auth 5], OG [auth y], PB [auth 5], PC [auth 5], PD [auth 5], PE [auth 5], PF [auth 5], QB [auth 5], QC [auth 5], QD [auth 5], QE [auth 5], QF [auth 5], RB [auth 5], RC [auth 5], RD [auth 5], RE [auth 5], RF [auth 5], SB [auth 5], SC [auth 5], SD [auth 5], SE [auth 5], SF [auth 5], TB [auth 5], TC [auth 5], TD [auth 5], TE [auth 5], TF [auth 5], UB [auth 5], UC [auth 5], UD [auth 5], UE [auth 5], UF [auth 5], VB [auth 5], VC [auth 5], VD [auth 5], VE [auth 5], VF [auth 7], WB [auth 5], WC [auth 5], WD [auth 5], WE [auth 5], WF [auth 7], XB [auth 5], XC [auth 5], XD [auth 5], XE [auth 5], XF [auth 7], YB [auth 5], YC [auth 5], YD [auth 5], YE [auth 5], YF [auth 7], ZB [auth 5], ZC [auth 5], ZD [auth 5], ZE [auth 5], ZF [auth 7]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain AC [auth 5] Focus chain AD [auth 5] Focus chain AE [auth 5] Focus chain AF [auth 5] Focus chain AG [auth 8] Focus chain BC [auth 5] Focus chain BD [auth 5] Focus chain BE [auth 5] Focus chain BF [auth 5] Focus chain BG [auth 8] Focus chain CC [auth 5] Focus chain CD [auth 5] Focus chain CE [auth 5] Focus chain CF [auth 5] Focus chain CG [auth 8] Focus chain DC [auth 5] Focus chain DD [auth 5] Focus chain DE [auth 5] Focus chain DF [auth 5] Focus chain DG [auth P] Focus chain EC [auth 5] Focus chain ED [auth 5] Focus chain EE [auth 5] Focus chain EF [auth 5] Focus chain EG [auth V] Focus chain FC [auth 5] Focus chain FD [auth 5] Focus chain FE [auth 5] Focus chain FF [auth 5] Focus chain FG [auth g] Focus chain GB [auth 5] Focus chain GC [auth 5] Focus chain GD [auth 5] Focus chain GE [auth 5] Focus chain GF [auth 5] Focus chain HB [auth 5] Focus chain HC [auth 5] Focus chain HD [auth 5] Focus chain HE [auth 5] Focus chain HF [auth 5] Focus chain IB [auth 5] Focus chain IC [auth 5] Focus chain ID [auth 5] Focus chain IE [auth 5] Focus chain IF [auth 5] Focus chain JB [auth 5] Focus chain JC [auth 5] Focus chain JD [auth 5] Focus chain JE [auth 5] Focus chain JF [auth 5] Focus chain JG [auth v] Focus chain KB [auth 5] Focus chain KC [auth 5] Focus chain KD [auth 5] Focus chain KE [auth 5] Focus chain KF [auth 5] Focus chain LB [auth 5] Focus chain LC [auth 5] Focus chain LD [auth 5] Focus chain LE [auth 5] Focus chain LF [auth 5] Focus chain MB [auth 5] Focus chain MC [auth 5] Focus chain MD [auth 5] Focus chain ME [auth 5] Focus chain MF [auth 5] Focus chain MG [auth x] Focus chain NB [auth 5] Focus chain NC [auth 5] Focus chain ND [auth 5] Focus chain NE [auth 5] Focus chain NF [auth 5] Focus chain OB [auth 5] Focus chain OC [auth 5] Focus chain OD [auth 5] Focus chain OE [auth 5] Focus chain OF [auth 5] Focus chain OG [auth y] Focus chain PB [auth 5] Focus chain PC [auth 5] Focus chain PD [auth 5] Focus chain PE [auth 5] Focus chain PF [auth 5] Focus chain QB [auth 5] Focus chain QC [auth 5] Focus chain QD [auth 5] Focus chain QE [auth 5] Focus chain QF [auth 5] Focus chain RB [auth 5] Focus chain RC [auth 5] Focus chain RD [auth 5] Focus chain RE [auth 5] Focus chain RF [auth 5] Focus chain SB [auth 5] Focus chain SC [auth 5] Focus chain SD [auth 5] Focus chain SE [auth 5] Focus chain SF [auth 5] Focus chain TB [auth 5] Focus chain TC [auth 5] Focus chain TD [auth 5] Focus chain TE [auth 5] Focus chain TF [auth 5] Focus chain UB [auth 5] Focus chain UC [auth 5] Focus chain UD [auth 5] Focus chain UE [auth 5] Focus chain UF [auth 5] Focus chain VB [auth 5] Focus chain VC [auth 5] Focus chain VD [auth 5] Focus chain VE [auth 5] Focus chain VF [auth 7] Focus chain WB [auth 5] Focus chain WC [auth 5] Focus chain WD [auth 5] Focus chain WE [auth 5] Focus chain WF [auth 7] Focus chain XB [auth 5] Focus chain XC [auth 5] Focus chain XD [auth 5] Focus chain XE [auth 5] Focus chain XF [auth 7] Focus chain YB [auth 5] Focus chain YC [auth 5] Focus chain YD [auth 5] Focus chain YE [auth 5] Focus chain YF [auth 7] Focus chain ZB [auth 5] Focus chain ZC [auth 5] Focus chain ZD [auth 5] Focus chain ZE [auth 5] Focus chain ZF [auth 7] Interactions & Density Focus chain AC [auth 5] Focus chain AD [auth 5] Focus chain AE [auth 5] Focus chain AF [auth 5] Focus chain AG [auth 8] Focus chain BC [auth 5] Focus chain BD [auth 5] Focus chain BE [auth 5] Focus chain BF [auth 5] Focus chain BG [auth 8] Focus chain CC [auth 5] Focus chain CD [auth 5] Focus chain CE [auth 5] Focus chain CF [auth 5] Focus chain CG [auth 8] Focus chain DC [auth 5] Focus chain DD [auth 5] Focus chain DE [auth 5] Focus chain DF [auth 5] Focus chain DG [auth P] Focus chain EC [auth 5] Focus chain ED [auth 5] Focus chain EE [auth 5] Focus chain EF [auth 5] Focus chain EG [auth V] Focus chain FC [auth 5] Focus chain FD [auth 5] Focus chain FE [auth 5] Focus chain FF [auth 5] Focus chain FG [auth g] Focus chain GB [auth 5] Focus chain GC [auth 5] Focus chain GD [auth 5] Focus chain GE [auth 5] Focus chain GF [auth 5] Focus chain HB [auth 5] Focus chain HC [auth 5] Focus chain HD [auth 5] Focus chain HE [auth 5] Focus chain HF [auth 5] Focus chain IB [auth 5] Focus chain IC [auth 5] Focus chain ID [auth 5] Focus chain IE [auth 5] Focus chain IF [auth 5] Focus chain JB [auth 5] Focus chain JC [auth 5] Focus chain JD [auth 5] Focus chain JE [auth 5] Focus chain JF [auth 5] Focus chain JG [auth v] Focus chain KB [auth 5] Focus chain KC [auth 5] Focus chain KD [auth 5] Focus chain KE [auth 5] Focus chain KF [auth 5] Focus chain LB [auth 5] Focus chain LC [auth 5] Focus chain LD [auth 5] Focus chain LE [auth 5] Focus chain LF [auth 5] Focus chain MB [auth 5] Focus chain MC [auth 5] Focus chain MD [auth 5] Focus chain ME [auth 5] Focus chain MF [auth 5] Focus chain MG [auth x] Focus chain NB [auth 5] Focus chain NC [auth 5] Focus chain ND [auth 5] Focus chain NE [auth 5] Focus chain NF [auth 5] Focus chain OB [auth 5] Focus chain OC [auth 5] Focus chain OD [auth 5] Focus chain OE [auth 5] Focus chain OF [auth 5] Focus chain OG [auth y] Focus chain PB [auth 5] Focus chain PC [auth 5] Focus chain PD [auth 5] Focus chain PE [auth 5] Focus chain PF [auth 5] Focus chain QB [auth 5] Focus chain QC [auth 5] Focus chain QD [auth 5] Focus chain QE [auth 5] Focus chain QF [auth 5] Focus chain RB [auth 5] Focus chain RC [auth 5] Focus chain RD [auth 5] Focus chain RE [auth 5] Focus chain RF [auth 5] Focus chain SB [auth 5] Focus chain SC [auth 5] Focus chain SD [auth 5] Focus chain SE [auth 5] Focus chain SF [auth 5] Focus chain TB [auth 5] Focus chain TC [auth 5] Focus chain TD [auth 5] Focus chain TE [auth 5] Focus chain TF [auth 5] Focus chain UB [auth 5] Focus chain UC [auth 5] Focus chain UD [auth 5] Focus chain UE [auth 5] Focus chain UF [auth 5] Focus chain VB [auth 5] Focus chain VC [auth 5] Focus chain VD [auth 5] Focus chain VE [auth 5] Focus chain VF [auth 7] Focus chain WB [auth 5] Focus chain WC [auth 5] Focus chain WD [auth 5] Focus chain WE [auth 5] Focus chain WF [auth 7] Focus chain XB [auth 5] Focus chain XC [auth 5] Focus chain XD [auth 5] Focus chain XE [auth 5] Focus chain XF [auth 7] Focus chain YB [auth 5] Focus chain YC [auth 5] Focus chain YD [auth 5] Focus chain YE [auth 5] Focus chain YF [auth 7] Focus chain ZB [auth 5] Focus chain ZC [auth 5] Focus chain ZD [auth 5] Focus chain ZE [auth 5] Focus chain ZF [auth 7]

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.70 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2018-03-28

Deposition Author(s):

Kobayashi, K.

Jomaa, A.

Ban, N.

Funding Organization	Location	Grant Number
Swiss National Science Foundation	Switzerland	51NF40_141735
Swiss National Science Foundation	Switzerland	310030B_163478

Revision History (Full details and data files)

Version 1.0: 2018-03-28
Type: Initial release
Version 1.1: 2018-04-11
Changes: Data collection, Database references
Version 1.2: 2018-05-02
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Entity ID: 1
Molecule	Chains	Length	Organism	Image
Canis lupus familiaris RNA, 7SL, cytoplasmic 1 (RN7SL1), SRP RNA	A [auth 1]	299	Canis lupus familiaris
Sequence Annotations Expand
Reference Sequence LOADING

Prepare Data

Validate Data

Deposit Data

Help and Resources

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Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex

Structure of a prehandover mammalian ribosomal SRP·SRP receptor targeting complex.

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