7MB3

Deposited: 2021-03-31 Released: 2022-10-12
Deposition Author(s): Lockbaum, G.J., Schiffer, C.A.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

Experimental Data Snapshot

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.2 of the entry. See complete history.

Literature

Macromolecule Content

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
3C-like proteinase	A B [auth D] C D [auth B] E A, B [auth D], C, D [auth B], E, F	306	Severe acute respiratory syndrome coronavirus 2	Mutation(s): 0 Gene Names: rep, 1a-1b EC: 3.4.22.69
UniProt
Find proteins for P0DTD1 (Severe acute respiratory syndrome coronavirus 2) Explore P0DTD1 Go to UniProtKB: P0DTD1
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0DTD1
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
YVV (Subject of Investigation/LOI) Query on YVV Download Ideal Coordinates CCD File SDF format, chain G [auth A] SDF format, chain H [auth D] SDF format, chain I [auth C] SDF format, chain J [auth B] SDF format, chain K [auth E] SDF format, chain L [auth F] MOL2 format, chain G [auth A] MOL2 format, chain H [auth D] MOL2 format, chain I [auth C] MOL2 format, chain J [auth B] MOL2 format, chain K [auth E] MOL2 format, chain L [auth F] mmCIF format, chain G [auth A] mmCIF format, chain H [auth D] mmCIF format, chain I [auth C] mmCIF format, chain J [auth B] mmCIF format, chain K [auth E] mmCIF format, chain L [auth F]	G [auth A] H [auth D] I [auth C] J [auth B] K [auth E] G [auth A], H [auth D], I [auth C], J [auth B], K [auth E], L [auth F]	N-{3-[(prop-2-yn-1-yl)oxy]propanoyl}-D-phenylalanyl-N-{(2R)-5-ethoxy-5-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]pentan-2-yl}-L-phenylalaninamide C₃₅ H₄₄ N₄ O₇ DFVBMNVNJFHZTI-KJHMZRPRSA-N		Interactions Focus chain G [auth A] Focus chain H [auth D] Focus chain I [auth C] Focus chain J [auth B] Focus chain K [auth E] Focus chain L [auth F] Interactions & Density Focus chain G [auth A] Focus chain H [auth D] Focus chain I [auth C] Focus chain J [auth B] Focus chain K [auth E] Focus chain L [auth F]