Download MendeleyCrystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 5.5 - apo form
Silva, A., Nunes-Costa, D., Empadinhas, N., Barbosa Pereira, P.J., Macedo-Ribeiro, S.To be published.
7P8G
Crystal structure of Mycobacterium hassiacum glucosyl-3-phosphoglycerate synthase at pH 5.5 - apo form
- PDB DOI: https://doi.org/10.2210/pdb7P8G/pdb
- Classification: TRANSFERASE
- Organism(s): Mycolicibacterium hassiacum DSM 44199
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2021-07-21 Released: 2023-01-25
- Funding Organization(s): Fundacao para a Ciencia e a Tecnologia
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.13 Å
- R-Value Free: 0.229
- R-Value Work: 0.205
- R-Value Observed: 0.206
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Glucosyl-3-phosphoglycerate synthase | A | 327 | Mycolicibacterium hassiacum DSM 44199 | Mutation(s): 0 Gene Names: gpgS, C731_3243, MHAS_02845 EC: 2.4.1.266 |  |
UniProt | |||||
Find proteins for K5B7Z4 (Mycolicibacterium hassiacum (strain DSM 44199 / CIP 105218 / JCM 12690 / 3849)) Explore K5B7Z4 Go to UniProtKB: K5B7Z4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | K5B7Z4 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| BGC Query on BGC | C [auth A] | beta-D-glucopyranose C6 H12 O6 WQZGKKKJIJFFOK-VFUOTHLCSA-N |  | Ligand Interaction | |
| MLI Query on MLI | G [auth A] | MALONATE ION C3 H2 O4 OFOBLEOULBTSOW-UHFFFAOYSA-L |  | Ligand Interaction | |
| CL Query on CL | B [auth A], D [auth A], E [auth A], F [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.13 Å
- R-Value Free: 0.229
- R-Value Work: 0.205
- R-Value Observed: 0.206
- Space Group: I 41
- Diffraction Data: https://doi.org/10.15785/SBGRID/991
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 101.423 | α = 90 |
| b = 101.423 | β = 90 |
| c = 122.625 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| SCALA | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-01-25 Deposition Author(s): Silva, A., Nunes-Costa, D., Barbosa Pereira, P.J., Macedo-Ribeiro, S.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Fundacao para a Ciencia e a Tecnologia | Portugal | -- |
Revision History (Full details and data files)
- Version 1.0: 2023-01-25
Type: Initial release - Version 1.1: 2023-03-01
Changes: Structure summary
