7PK0

Bovine Glycine N-Acyltransferase complexed with Benzoyl-CoA

• PDB DOI: https://doi.org/10.2210/pdb7PK0/pdb

• Classification: TRANSFERASE
• Organism(s): Bos taurus
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): Yes 


• Deposited: 2021-08-25 Released: 2022-09-07 
• Deposition Author(s): Opperman, D.J., Ebrecht, A.C., Read, R.J.
• Funding Organization(s): Global Challenges Research Fund

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.50 Å
• R-Value Free: 0.211 
• R-Value Work: 0.181 
• R-Value Observed: 0.182 

Literature

Structure of glycine N-acyltransferase clarifies its catalytic mechanism

Ebrecht, A.C., Badenhorst, C.P.S., Read, R.J., Opperman, D.J., van Dijk, A.A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 34.93 kDa 
• Atom Count: 2,542 
• Modelled Residue Count: 284 
• Deposited Residue Count: 296 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Glycine N-acyltransferase	A	296	Bos taurus	Mutation(s): 1  Gene Names: GLYAT EC: 2.3.1.13 (PDB Primary Data), 2.3.1.71 (PDB Primary Data)
UniProt
Find proteins for Q2KIR7 (Bos taurus) Explore Q2KIR7  Go to UniProtKB:  Q2KIR7

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
BYC (Subject of Investigation/LOI)	C [auth A]	benzoyl coenzyme A C28 H40 N7 O17 P3 S VEVJTUNLALKRNO-TYHXJLICSA-N
ACT	B [auth A]	ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.50 Å
• R-Value Free: 0.211 
• R-Value Work: 0.181 
• R-Value Observed: 0.182 
• Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 63.84	α = 90
b = 63.84	β = 90
c = 135.336	γ = 90

Software Package:

Software Name	Purpose
XDS	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
XDS	data reduction

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2022-09-07 
Deposition Author(s): Opperman, D.J., Ebrecht, A.C., Read, R.J.

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Funding Organization	Location	Grant Number
Global Challenges Research Fund	United Kingdom	ST/R002754/1

Revision History  

• Version 1.0: 2022-09-07
  Type: Initial release
  
• Version 1.1: 2024-06-19
  Changes: Data collection