Bifunctional xylosidase/glucosidase LXYL with intermediate substrate xylose
Gong, W.M., Yang, L.Y.To be published.
Experimental Data Snapshot
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Beta-D-xylosidase/beta-D-glucosidase | 803 | Lentinula edodes | Mutation(s): 0  Gene Names: Lxyl-p1-2 | ![]() | |
UniProt | |||||
Find proteins for G8GLP2 (Lentinula edodes) Explore G8GLP2  Go to UniProtKB:  G8GLP2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | G8GLP2 | ||||
Glycosylation | |||||
Glycosylation Sites: 5 | |||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-1)-alpha-D-mannopyranose-(3-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | C | 4 | N/A | N-Glycosylation |
Entity ID: 3 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | D, G, H, I, J | 2 | N/A | N-Glycosylation |
Entity ID: 4 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-alpha-D-mannopyranose | E, F | 2 | N/A | N/A |
Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
BKR Query on BKR | M [auth A], S [auth B] | Deacetyltaxol C45 H49 N O13 TYLVGQKNNUHXIP-MHHARFCSSA-N | |||
NAG Query on NAG | K [auth A] L [auth A] O [auth A] P [auth A] Q [auth B] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
XLS (Subject of Investigation/LOI) Query on XLS | N [auth A], T [auth B] | D-xylose C5 H10 O5 PYMYPHUHKUWMLA-VPENINKCSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 80.35 | α = 90 |
b = 182.57 | β = 90 |
c = 242.16 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
PDB_EXTRACT | data extraction |
xia2 | data reduction |
xia2 | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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National Natural Science Foundation of China (NSFC) | China | 31270796 |